Wall clock time and date at job start Tue Mar 31 2020 15:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47130 * 2 1 4 4 H 1.09004 * 109.47145 * 55.00356 * 3 2 1 5 5 C 1.52997 * 109.47584 * 295.00444 * 3 2 1 6 6 C 1.50700 * 109.47014 * 175.00117 * 3 2 1 7 7 O 1.21277 * 119.99962 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99882 * 180.02562 * 6 3 2 9 9 C 1.46508 * 119.99727 * 179.97438 * 8 6 3 10 10 H 1.09001 * 112.90570 * 336.24921 * 9 8 6 11 11 C 1.53776 * 113.61221 * 107.50020 * 9 8 6 12 12 C 1.53775 * 87.08393 * 89.11491 * 11 9 8 13 13 H 1.08996 * 113.69476 * 270.87629 * 12 11 9 14 14 C 1.53000 * 113.61825 * 139.97637 * 12 11 9 15 15 N 1.46499 * 109.46840 * 87.50296 * 14 12 11 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00092 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00019 * 359.97438 * 20 19 18 22 22 C 1.38793 * 120.00035 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00227 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46923 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47323 * 119.99480 * 24 22 20 27 27 H 1.48497 * 109.46847 * 239.99765 * 24 22 20 28 28 C 1.53774 * 113.61242 * 204.99487 * 9 8 6 29 29 H 1.08999 * 109.47068 * 59.99600 * 1 2 3 30 30 H 1.09001 * 109.47490 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47076 * 299.99806 * 1 2 3 32 32 H 1.09002 * 109.46623 * 240.00448 * 2 1 3 33 33 H 1.08999 * 109.47068 * 120.00400 * 2 1 3 34 34 H 1.09007 * 109.46390 * 299.99823 * 5 3 2 35 35 H 1.08993 * 109.47616 * 59.99412 * 5 3 2 36 36 H 1.09001 * 109.47242 * 180.02562 * 5 3 2 37 37 H 0.96998 * 119.99958 * 359.97438 * 8 6 3 38 38 H 1.09005 * 113.62055 * 334.56345 * 11 9 8 39 39 H 1.08999 * 113.61331 * 203.66725 * 11 9 8 40 40 H 1.09002 * 109.47398 * 207.50622 * 14 12 11 41 41 H 1.09001 * 109.47194 * 327.50803 * 14 12 11 42 42 H 0.97000 * 120.00420 * 0.02562 * 15 14 12 43 43 H 1.09002 * 109.47152 * 300.00160 * 18 16 15 44 44 H 1.09001 * 109.46980 * 60.00059 * 18 16 15 45 45 H 0.97005 * 119.99745 * 180.02562 * 23 22 20 46 46 H 1.09006 * 113.61277 * 156.33445 * 28 9 8 47 47 H 1.09006 * 113.61790 * 25.43358 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5419 1.4442 0.1238 7 8 4.1450 0.3951 0.2037 8 7 4.2149 2.6118 0.1458 9 6 5.6750 2.6135 0.2667 10 1 6.0633 1.7070 0.7311 11 6 6.4002 2.9990 -1.0333 12 6 6.3061 4.4591 -0.5603 13 1 5.3929 4.9637 -0.8757 14 6 7.5664 5.2783 -0.8455 15 7 7.4797 5.8559 -2.1890 16 6 8.4843 6.6214 -2.6596 17 8 9.4598 6.8323 -1.9707 18 6 8.3948 7.2160 -4.0415 19 16 9.8865 8.1838 -4.3796 20 6 9.5242 8.7450 -6.0100 21 1 8.5966 8.4613 -6.4851 22 6 10.4312 9.5506 -6.6843 23 7 11.5619 9.8959 -6.1055 24 14 10.0468 10.1462 -8.4126 25 1 8.7223 9.6227 -8.8333 26 1 10.0211 11.6308 -8.4304 27 1 11.0915 9.6579 -9.3482 28 6 6.2412 3.9078 0.8738 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0699 1.5875 -2.1491 35 1 0.5490 2.1253 -1.3969 36 1 1.9990 3.1541 -1.3074 37 1 3.7325 3.4508 0.0815 38 1 5.8214 2.7935 -1.9338 39 1 7.4219 2.6237 -1.0911 40 1 7.6536 6.0788 -0.1108 41 1 8.4418 4.6317 -0.7839 42 1 6.6993 5.6875 -2.7400 43 1 8.3070 6.4158 -4.7764 44 1 7.5198 7.8631 -4.1026 45 1 12.1956 10.4593 -6.5766 46 1 7.2195 3.7810 1.3376 47 1 5.5339 4.4362 1.5132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756244817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:49 Heat of formation + Delta-G solvation = -78.851303 kcal Electronic energy + Delta-G solvation = -24660.657993 eV Core-core repulsion = 20969.422402 eV Total energy + Delta-G solvation = -3691.235591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84958 -39.46804 -38.59582 -35.84141 -34.67977 -33.31414 -32.43485 -30.32947 -29.71142 -27.25165 -26.09972 -25.79042 -25.45816 -23.20290 -22.19271 -20.51057 -20.24015 -19.52919 -17.89051 -17.58219 -16.57325 -16.27981 -16.04143 -15.90112 -15.51463 -15.04352 -14.87217 -14.81167 -14.25387 -14.15923 -13.94355 -13.91500 -13.36189 -13.17017 -12.96041 -12.81611 -12.62475 -12.57890 -12.38374 -12.16158 -12.05957 -11.73293 -11.34550 -11.27498 -11.15250 -11.07826 -11.02549 -11.00622 -10.75594 -10.59542 -10.09564 -9.81010 -9.44400 -9.37717 -9.08464 -8.86892 -8.23581 -6.50513 -6.22448 -3.92909 2.24119 2.69849 3.03363 3.10441 3.20903 3.27698 3.32285 3.69413 4.07955 4.16860 4.19676 4.24160 4.27276 4.40330 4.46752 4.50060 4.79415 4.88560 4.96042 5.00609 5.05607 5.12828 5.14158 5.26782 5.30644 5.35334 5.37548 5.42853 5.43653 5.48664 5.55809 5.62596 5.63547 5.74288 5.77379 5.78994 5.88790 5.89406 5.93555 6.13285 6.22545 6.62865 7.07669 7.59162 7.71043 7.83481 8.34719 8.61873 9.23037 10.85039 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.001769 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.081452 B =15822.393479 C =16885.350335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.106 4.106 3 C -0.111 4.111 4 H 0.097 0.903 5 C -0.147 4.147 6 C 0.519 3.481 7 O -0.537 6.537 8 N -0.713 5.713 9 C 0.117 3.883 10 H 0.104 0.896 11 C -0.145 4.145 12 C -0.123 4.123 13 H 0.095 0.905 14 C 0.131 3.869 15 N -0.738 5.738 16 C 0.530 3.470 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C -0.135 4.135 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.401 0.599 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.100 0.900 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.111 -16.645 14.042 31.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.144 4.144 3 C -0.133 4.133 4 H 0.115 0.885 5 C -0.204 4.204 6 C 0.305 3.695 7 O -0.413 6.413 8 N -0.364 5.364 9 C 0.012 3.988 10 H 0.122 0.878 11 C -0.184 4.184 12 C -0.142 4.142 13 H 0.113 0.887 14 C 0.007 3.993 15 N -0.392 5.392 16 C 0.316 3.684 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.174 4.174 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.231 0.769 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.119 0.881 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.860 -16.966 15.253 30.913 hybrid contribution -1.934 0.605 -2.236 3.018 sum -22.794 -16.362 13.017 30.930 Atomic orbital electron populations 1.21849 0.95373 1.02034 1.01900 1.21348 0.95439 0.94039 1.03574 1.21374 0.91558 0.99655 1.00673 0.88492 1.21842 1.02584 1.00170 0.95817 1.20756 0.90025 0.83485 0.75210 1.90710 1.70349 1.31393 1.48868 1.45728 1.06844 1.08823 1.75017 1.21851 0.79937 0.99572 0.97472 0.87847 1.23520 1.01715 0.95187 0.97961 1.22856 0.98654 0.95555 0.97101 0.88728 1.21270 0.96818 0.96758 0.84440 1.45987 1.22537 1.53380 1.17336 1.20313 0.82109 0.77618 0.88315 1.90702 1.31108 1.58547 1.58917 1.23530 1.07655 1.03798 0.95419 1.85403 1.17885 1.60595 1.19562 1.22911 1.07867 1.36742 1.00830 0.90887 1.24994 0.94460 0.95344 0.98803 1.70031 1.08273 1.34476 1.37488 0.86115 0.78447 0.78496 0.82424 1.19633 1.20560 1.20560 1.23302 1.02460 0.95578 0.96028 0.92366 0.92385 0.92699 0.91247 0.91131 0.91909 0.91000 0.92152 0.76480 0.90952 0.88686 0.91533 0.91402 0.76940 0.89278 0.89291 0.92234 0.88146 0.90571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.67 37.16 0.36 -0.31 16 2 C -0.11 -0.66 4.75 -26.73 -0.13 -0.78 16 3 C -0.11 -0.60 2.72 -91.78 -0.25 -0.85 16 4 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 5 C -0.15 -0.61 8.84 37.16 0.33 -0.28 16 6 C 0.52 4.26 7.15 -10.98 -0.08 4.19 16 7 O -0.54 -6.69 15.52 5.56 0.09 -6.61 16 8 N -0.71 -4.41 5.16 -53.02 -0.27 -4.69 16 9 C 0.12 0.84 4.32 -67.12 -0.29 0.55 16 10 H 0.10 0.92 7.47 -51.93 -0.39 0.53 16 11 C -0.15 -1.09 7.43 -25.92 -0.19 -1.28 16 12 C -0.12 -0.85 3.63 -89.81 -0.33 -1.17 16 13 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 14 C 0.13 1.40 5.51 -4.04 -0.02 1.38 16 15 N -0.74 -9.38 5.56 -60.29 -0.33 -9.72 16 16 C 0.53 9.78 7.85 -10.98 -0.09 9.69 16 17 O -0.52 -11.75 15.86 5.56 0.09 -11.67 16 18 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 20 C -0.54 -15.24 9.50 30.94 0.29 -14.95 16 21 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 22 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 23 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 24 Si 0.92 21.37 29.55 -169.99 -5.02 16.34 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C -0.14 -0.80 7.39 -25.92 -0.19 -1.00 16 29 H 0.06 0.22 6.56 -51.93 -0.34 -0.12 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.07 0.52 7.96 -51.93 -0.41 0.11 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.23 6.56 -51.93 -0.34 -0.11 16 36 H 0.06 0.19 7.56 -51.93 -0.39 -0.20 16 37 H 0.40 1.52 8.12 -40.82 -0.33 1.19 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.77 7.90 -51.93 -0.41 0.36 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.80 7.84 -51.93 -0.41 0.39 16 42 H 0.40 3.90 8.47 -40.82 -0.35 3.55 16 43 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.10 0.59 8.10 -51.93 -0.42 0.17 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -36.50 399.41 -9.36 -45.86 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -7.99 Total: -0.57 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -0.46 Total: -5.68 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: 0.13 Total: -39.83 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.17 Total: -18.27 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.50 -9.36 -45.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756244817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.993 kcal (2) G-P(sol) polarization free energy of solvation -36.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds