Wall clock time and date at job start Tue Mar 31 2020 15:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47130 * 2 1 4 4 H 1.09004 * 109.47145 * 55.00356 * 3 2 1 5 5 C 1.52997 * 109.47584 * 295.00444 * 3 2 1 6 6 C 1.50700 * 109.47014 * 175.00117 * 3 2 1 7 7 O 1.21277 * 119.99962 * 0.02562 * 6 3 2 8 8 N 1.34779 * 119.99882 * 180.02562 * 6 3 2 9 9 C 1.46508 * 119.99727 * 179.97438 * 8 6 3 10 10 H 1.09001 * 112.90570 * 336.24921 * 9 8 6 11 11 C 1.53776 * 113.61221 * 107.50020 * 9 8 6 12 12 C 1.53775 * 87.08393 * 89.11491 * 11 9 8 13 13 H 1.08996 * 113.69476 * 270.87629 * 12 11 9 14 14 C 1.53000 * 113.61825 * 139.97637 * 12 11 9 15 15 N 1.46499 * 109.46840 * 87.50296 * 14 12 11 16 16 C 1.34779 * 119.99872 * 180.02562 * 15 14 12 17 17 O 1.21278 * 120.00071 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99944 * 180.02562 * 16 15 14 19 19 S 1.81002 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.76198 * 100.00092 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00019 * 359.97438 * 20 19 18 22 22 C 1.38793 * 120.00035 * 180.02562 * 20 19 18 23 23 N 1.31631 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00227 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.46923 * 359.97438 * 24 22 20 26 26 H 1.48492 * 109.47323 * 119.99480 * 24 22 20 27 27 H 1.48497 * 109.46847 * 239.99765 * 24 22 20 28 28 C 1.53774 * 113.61242 * 204.99487 * 9 8 6 29 29 H 1.08999 * 109.47068 * 59.99600 * 1 2 3 30 30 H 1.09001 * 109.47490 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47076 * 299.99806 * 1 2 3 32 32 H 1.09002 * 109.46623 * 240.00448 * 2 1 3 33 33 H 1.08999 * 109.47068 * 120.00400 * 2 1 3 34 34 H 1.09007 * 109.46390 * 299.99823 * 5 3 2 35 35 H 1.08993 * 109.47616 * 59.99412 * 5 3 2 36 36 H 1.09001 * 109.47242 * 180.02562 * 5 3 2 37 37 H 0.96998 * 119.99958 * 359.97438 * 8 6 3 38 38 H 1.09005 * 113.62055 * 334.56345 * 11 9 8 39 39 H 1.08999 * 113.61331 * 203.66725 * 11 9 8 40 40 H 1.09002 * 109.47398 * 207.50622 * 14 12 11 41 41 H 1.09001 * 109.47194 * 327.50803 * 14 12 11 42 42 H 0.97000 * 120.00420 * 0.02562 * 15 14 12 43 43 H 1.09002 * 109.47152 * 300.00160 * 18 16 15 44 44 H 1.09001 * 109.46980 * 60.00059 * 18 16 15 45 45 H 0.97005 * 119.99745 * 180.02562 * 23 22 20 46 46 H 1.09006 * 113.61277 * 156.33445 * 28 9 8 47 47 H 1.09006 * 113.61790 * 25.43358 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5419 1.4442 0.1238 7 8 4.1450 0.3951 0.2037 8 7 4.2149 2.6118 0.1458 9 6 5.6750 2.6135 0.2667 10 1 6.0633 1.7070 0.7311 11 6 6.4002 2.9990 -1.0333 12 6 6.3061 4.4591 -0.5603 13 1 5.3929 4.9637 -0.8757 14 6 7.5664 5.2783 -0.8455 15 7 7.4797 5.8559 -2.1890 16 6 8.4843 6.6214 -2.6596 17 8 9.4598 6.8323 -1.9707 18 6 8.3948 7.2160 -4.0415 19 16 9.8865 8.1838 -4.3796 20 6 9.5242 8.7450 -6.0100 21 1 8.5966 8.4613 -6.4851 22 6 10.4312 9.5506 -6.6843 23 7 11.5619 9.8959 -6.1055 24 14 10.0468 10.1462 -8.4126 25 1 8.7223 9.6227 -8.8333 26 1 10.0211 11.6308 -8.4304 27 1 11.0915 9.6579 -9.3482 28 6 6.2412 3.9078 0.8738 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0699 1.5875 -2.1491 35 1 0.5490 2.1253 -1.3969 36 1 1.9990 3.1541 -1.3074 37 1 3.7325 3.4508 0.0815 38 1 5.8214 2.7935 -1.9338 39 1 7.4219 2.6237 -1.0911 40 1 7.6536 6.0788 -0.1108 41 1 8.4418 4.6317 -0.7839 42 1 6.6993 5.6875 -2.7400 43 1 8.3070 6.4158 -4.7764 44 1 7.5198 7.8631 -4.1026 45 1 12.1956 10.4593 -6.5766 46 1 7.2195 3.7810 1.3376 47 1 5.5339 4.4362 1.5132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756244817.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:48 Heat of formation + Delta-G solvation = -104.776604 kcal Electronic energy + Delta-G solvation = -24661.782198 eV Core-core repulsion = 20969.422402 eV Total energy + Delta-G solvation = -3692.359796 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.50116 -40.59628 -39.53063 -36.35714 -35.76362 -34.58416 -34.12830 -31.39532 -30.48528 -28.29575 -27.58559 -26.67156 -26.20396 -23.90287 -22.79736 -21.80613 -20.78736 -20.30953 -19.73003 -18.24434 -17.74963 -17.33960 -16.98313 -16.87805 -16.68063 -16.43958 -15.96360 -15.70732 -15.48024 -15.03543 -14.95699 -14.56300 -14.48888 -14.38202 -13.92211 -13.69864 -13.43336 -13.38540 -13.15737 -12.95565 -12.93202 -12.85646 -12.61121 -12.56187 -12.48848 -11.98477 -11.73912 -11.70762 -11.62484 -11.58465 -11.26647 -11.15808 -10.88744 -10.74187 -10.26629 -10.10306 -10.00673 -8.66487 -8.34716 -6.12721 1.27919 1.41600 1.48008 1.58839 1.62267 1.63478 2.16101 2.26507 2.32834 2.99616 3.32122 3.49062 3.58175 3.68625 3.80183 3.85097 3.90503 4.01024 4.04265 4.29971 4.32538 4.40555 4.51830 4.52947 4.57757 4.62110 4.68848 4.74053 4.80974 4.85466 4.88404 4.98979 5.03476 5.05154 5.11801 5.13783 5.20041 5.24749 5.38567 5.42282 5.48385 5.50641 5.65851 6.20167 6.53675 6.56548 7.06815 7.27372 7.27496 8.74764 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.001769 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.081452 B =15822.393479 C =16885.350335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C -0.105 4.105 4 H 0.121 0.879 5 C -0.144 4.144 6 C 0.513 3.487 7 O -0.588 6.588 8 N -0.699 5.699 9 C 0.116 3.884 10 H 0.082 0.918 11 C -0.146 4.146 12 C -0.107 4.107 13 H 0.119 0.881 14 C 0.129 3.871 15 N -0.710 5.710 16 C 0.531 3.469 17 O -0.569 6.569 18 C -0.129 4.129 19 S -0.154 6.154 20 C -0.546 4.546 21 H 0.083 0.917 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.256 1.256 26 H -0.274 1.274 27 H -0.275 1.275 28 C -0.123 4.123 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.416 0.584 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.416 0.584 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.099 0.901 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.384 -16.123 13.408 33.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.145 4.145 3 C -0.126 4.126 4 H 0.139 0.861 5 C -0.201 4.201 6 C 0.301 3.699 7 O -0.468 6.468 8 N -0.350 5.350 9 C 0.010 3.990 10 H 0.100 0.900 11 C -0.185 4.185 12 C -0.125 4.125 13 H 0.137 0.863 14 C 0.006 3.994 15 N -0.364 5.364 16 C 0.317 3.683 17 O -0.447 6.447 18 C -0.281 4.281 19 S 0.073 5.927 20 C -0.694 4.694 21 H 0.101 0.899 22 C -0.192 4.192 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.180 1.180 26 H -0.199 1.199 27 H -0.200 1.200 28 C -0.162 4.162 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.254 0.746 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.253 0.747 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.118 0.882 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.205 -16.443 14.624 32.713 hybrid contribution -0.964 0.337 -1.944 2.196 sum -25.169 -16.107 12.680 32.461 Atomic orbital electron populations 1.21817 0.93644 1.02305 1.02876 1.21325 0.96875 0.94519 1.01793 1.21397 0.89344 0.99409 1.02429 0.86120 1.21852 1.03477 1.00577 0.94211 1.21339 0.91251 0.83114 0.74156 1.90692 1.71516 1.33253 1.51315 1.45617 1.06431 1.09100 1.73887 1.21756 0.80507 0.99368 0.97377 0.89978 1.23504 1.01255 0.95676 0.98078 1.22808 0.97582 0.94354 0.97788 0.86290 1.21430 0.98460 0.96699 0.82831 1.45741 1.21419 1.51035 1.18183 1.20077 0.82603 0.78152 0.87484 1.90692 1.33361 1.60759 1.59903 1.23376 1.04076 1.03519 0.97101 1.85592 1.23788 1.62838 1.20487 1.23244 1.08342 1.36885 1.00879 0.89862 1.26132 0.94071 0.95304 1.03674 1.70194 1.09581 1.35390 1.39643 0.84900 0.78860 0.77966 0.76185 1.17968 1.19894 1.20028 1.23254 1.02867 0.94426 0.95632 0.91351 0.92587 0.91638 0.93105 0.92981 0.93397 0.89556 0.90518 0.74612 0.91068 0.89704 0.91991 0.92659 0.74726 0.87382 0.87082 0.92008 0.88217 0.88666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.67 71.98 0.70 -0.37 16 2 C -0.11 -1.29 4.75 30.59 0.15 -1.14 16 3 C -0.10 -0.94 2.72 -11.54 -0.03 -0.97 16 4 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 5 C -0.14 -0.81 8.84 71.98 0.64 -0.17 16 6 C 0.51 7.97 7.15 87.66 0.63 8.60 16 7 O -0.59 -15.07 15.52 -3.02 -0.05 -15.11 16 8 N -0.70 -7.17 5.16 -440.04 -2.27 -9.44 16 9 C 0.12 1.50 4.32 45.51 0.20 1.70 16 10 H 0.08 1.48 7.47 -2.39 -0.02 1.46 16 11 C -0.15 -1.98 7.43 31.12 0.23 -1.74 16 12 C -0.11 -1.17 3.63 -10.27 -0.04 -1.21 16 13 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 14 C 0.13 2.52 5.51 86.38 0.48 3.00 16 15 N -0.71 -16.45 5.56 -463.05 -2.57 -19.02 16 16 C 0.53 19.10 7.85 87.66 0.69 19.78 16 17 O -0.57 -26.15 15.86 -3.02 -0.05 -26.20 16 18 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 19 S -0.15 -8.54 20.57 -56.49 -1.16 -9.71 16 20 C -0.55 -31.03 9.50 67.95 0.65 -30.39 16 21 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.73 5.49 84.86 0.47 1.20 16 23 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 24 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 25 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 28 C -0.12 -1.17 7.39 31.12 0.23 -0.94 16 29 H 0.07 0.36 6.56 -2.39 -0.02 0.34 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.80 7.96 -2.39 -0.02 0.78 16 34 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 35 H 0.09 0.27 6.56 -2.39 -0.02 0.25 16 36 H 0.08 0.19 7.56 -2.39 -0.02 0.17 16 37 H 0.42 1.65 8.12 -92.71 -0.75 0.90 16 38 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.08 1.34 7.90 -2.39 -0.02 1.32 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.06 1.27 7.84 -2.39 -0.02 1.25 16 42 H 0.42 6.67 8.47 -92.71 -0.79 5.88 16 43 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 44 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 45 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 46 H 0.10 1.02 8.10 -2.38 -0.02 1.00 16 47 H 0.09 0.61 8.14 -2.38 -0.02 0.59 16 Total: -1.00 -83.41 399.41 1.06 -82.36 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -0.57 Total: 14.65 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.41 Total: -7.25 kcal Atomic # 7 Polarization: -79.58 SS G_CDS: -4.55 Total: -84.13 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.09 Total: -41.32 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.71 kcal Total: -83.41 1.06 -82.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756244817.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.420 kcal (2) G-P(sol) polarization free energy of solvation -83.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds