Wall clock time and date at job start Tue Mar 31 2020 15:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46772 * 2 1 4 4 C 1.50700 * 109.46949 * 119.99515 * 2 1 3 5 5 O 1.21287 * 119.99813 * 0.02562 * 4 2 1 6 6 N 1.34777 * 119.99865 * 180.02562 * 4 2 1 7 7 C 1.46506 * 119.99719 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.46890 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.47216 * 65.00366 * 8 7 6 10 10 C 1.52998 * 109.47216 * 185.00067 * 8 7 6 11 11 C 1.53001 * 117.49881 * 248.75127 * 10 8 7 12 12 C 1.52997 * 117.50083 * 180.09006 * 10 8 7 13 13 N 1.46499 * 109.47349 * 305.00352 * 8 7 6 14 14 C 1.46499 * 120.00136 * 299.99631 * 13 8 7 15 15 C 1.34784 * 119.99971 * 119.99826 * 13 8 7 16 16 O 1.21274 * 119.99897 * 359.72827 * 15 13 8 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 13 8 18 18 S 1.81006 * 109.46975 * 180.02562 * 17 15 13 19 19 C 1.76200 * 100.00155 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99670 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00050 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99898 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47316 * 89.99758 * 23 21 19 25 25 H 1.48498 * 109.47135 * 209.99728 * 23 21 19 26 26 H 1.48505 * 109.47071 * 329.99777 * 23 21 19 27 27 H 1.08990 * 109.47041 * 300.00267 * 1 2 3 28 28 H 1.08996 * 109.46573 * 60.00296 * 1 2 3 29 29 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47041 * 239.99733 * 2 1 3 31 31 H 1.09003 * 109.47322 * 60.00070 * 3 2 1 32 32 H 1.08998 * 109.47064 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47195 * 299.99532 * 3 2 1 34 34 H 0.96995 * 120.00040 * 0.02562 * 6 4 2 35 35 H 1.09006 * 109.47017 * 60.00410 * 7 6 4 36 36 H 1.09004 * 109.47148 * 300.00368 * 7 6 4 37 37 H 1.08994 * 115.55126 * 34.41984 * 10 8 7 38 38 H 1.08996 * 117.50295 * 359.97438 * 11 10 8 39 39 H 1.09000 * 117.49891 * 145.01892 * 11 10 8 40 40 H 1.08996 * 117.50211 * 214.98007 * 12 10 8 41 41 H 1.09002 * 117.49720 * 359.97438 * 12 10 8 42 42 H 1.08996 * 109.47008 * 270.00543 * 14 13 8 43 43 H 1.08997 * 109.46865 * 30.00228 * 14 13 8 44 44 H 1.08998 * 109.47058 * 149.99741 * 14 13 8 45 45 H 1.09005 * 109.47403 * 300.00056 * 17 15 13 46 46 H 1.09002 * 109.47422 * 60.00295 * 17 15 13 47 47 H 0.97005 * 120.00072 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.2442 -1.1716 2.0287 6 7 3.3575 -0.8330 1.4441 7 6 3.8457 -1.5240 2.6401 8 6 5.3757 -1.5239 2.6402 9 1 5.7390 -0.5002 2.7302 10 6 5.8857 -2.3517 3.8215 11 6 6.5848 -1.6039 4.9586 12 6 7.4007 -2.4725 3.9978 13 7 5.8642 -2.1071 1.3882 14 6 5.5105 -3.4840 1.0344 15 6 6.6391 -1.3768 0.5618 16 8 6.9278 -0.2353 0.8523 17 6 7.1420 -1.9769 -0.7258 18 16 8.1480 -0.7575 -1.6073 19 6 8.5920 -1.6978 -3.0297 20 1 8.2414 -2.7138 -3.1364 21 6 9.3923 -1.1329 -4.0130 22 7 9.8192 0.1054 -3.8832 23 14 9.8624 -2.1296 -5.5213 24 1 8.8446 -1.9293 -6.5840 25 1 11.1892 -1.6825 -6.0162 26 1 9.9271 -3.5692 -5.1629 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8901 34 1 3.9878 -0.4638 0.8060 35 1 3.4829 -2.5519 2.6394 36 1 3.4819 -1.0108 3.5303 37 1 5.2777 -3.2165 4.0869 38 1 6.6818 -0.5223 4.8650 39 1 6.4370 -1.9770 5.9721 40 1 7.7893 -3.4166 4.3795 41 1 8.0341 -1.9626 3.2719 42 1 6.2618 -4.1659 1.4327 43 1 4.5365 -3.7291 1.4578 44 1 5.4699 -3.5814 -0.0505 45 1 7.7478 -2.8558 -0.5048 46 1 6.2945 -2.2667 -1.3470 47 1 10.3782 0.5004 -4.5706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756406067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:50 Heat of formation + Delta-G solvation = -58.766922 kcal Electronic energy + Delta-G solvation = -26515.740143 eV Core-core repulsion = 22825.375476 eV Total energy + Delta-G solvation = -3690.364667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44976 -39.54384 -37.59641 -35.46105 -34.58510 -34.21436 -32.47732 -30.57894 -28.46823 -27.24274 -26.82201 -25.54086 -24.50141 -22.59711 -22.29681 -20.98729 -19.91877 -19.15656 -17.75529 -17.35519 -16.99394 -16.31628 -16.01981 -15.56254 -15.37625 -15.08108 -14.84717 -14.51522 -14.19258 -13.85817 -13.83192 -13.32477 -13.15120 -12.96247 -12.71694 -12.46103 -12.39074 -12.36168 -12.26513 -12.08774 -11.88722 -11.66289 -11.37809 -11.30363 -11.21563 -11.10392 -11.06967 -10.80888 -10.55838 -10.46292 -9.85452 -9.81288 -9.44440 -9.16795 -9.11224 -8.65380 -8.29319 -6.56065 -6.26602 -3.97634 2.56367 2.72586 2.90906 3.06993 3.18777 3.21910 3.26679 3.48681 3.78783 4.15617 4.29792 4.51750 4.66383 4.75440 4.81140 4.82813 4.85579 4.98838 5.04720 5.08192 5.09181 5.17623 5.25723 5.40535 5.46112 5.49823 5.51653 5.52484 5.60861 5.66492 5.67961 5.73220 5.79980 5.81784 5.83040 5.99016 6.01470 6.06648 6.06765 6.08450 6.28880 6.54644 7.38376 7.42195 7.54978 8.12686 8.30265 8.42120 9.19129 10.80726 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.003639 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.655875 B = 7692.574812 C = 9601.581079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.117 4.117 3 C -0.146 4.146 4 C 0.518 3.482 5 O -0.547 6.547 6 N -0.724 5.724 7 C 0.115 3.885 8 C 0.158 3.842 9 H 0.109 0.891 10 C -0.166 4.166 11 C -0.170 4.170 12 C -0.164 4.164 13 N -0.614 5.614 14 C 0.081 3.919 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.151 4.151 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.917 3.083 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.406 0.594 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.203 -4.722 12.668 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.138 4.138 3 C -0.203 4.203 4 C 0.305 3.695 5 O -0.425 6.425 6 N -0.376 5.376 7 C -0.010 4.010 8 C 0.054 3.946 9 H 0.127 0.873 10 C -0.186 4.186 11 C -0.208 4.208 12 C -0.201 4.201 13 N -0.350 5.350 14 C -0.063 4.063 15 C 0.321 3.679 16 O -0.391 6.391 17 C -0.301 4.301 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.134 4.134 22 N -0.502 5.502 23 Si 0.744 3.256 24 H -0.202 1.202 25 H -0.207 1.207 26 H -0.197 1.197 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.241 0.759 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.107 0.893 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.223 -3.219 13.587 19.231 hybrid contribution 0.382 -2.023 -1.625 2.623 sum -12.841 -5.242 11.963 18.316 Atomic orbital electron populations 1.21595 0.92532 1.02635 1.02028 1.21322 0.98262 0.97591 0.96645 1.21802 1.01765 0.93901 1.02878 1.20725 0.81897 0.79241 0.87637 1.90674 1.55389 1.49069 1.47348 1.45987 1.07364 1.58640 1.25630 1.21635 0.93019 0.97857 0.88462 1.20808 0.91919 0.98982 0.82854 0.87271 1.22460 0.96323 1.02167 0.97602 1.23014 1.03947 0.99084 0.94740 1.22877 0.92861 1.01769 1.02599 1.47911 1.52064 1.14491 1.20530 1.21730 1.00566 0.82285 1.01693 1.20425 0.77047 0.85763 0.84685 1.90703 1.56206 1.17646 1.74540 1.23566 1.04269 1.05694 0.96583 1.85374 1.61115 1.16163 1.20669 1.22849 1.37377 1.01714 1.06474 0.90974 1.24973 0.95028 0.95207 0.98236 1.70010 1.33149 1.12760 1.34318 0.86186 0.78027 0.79855 0.81558 1.20246 1.20734 1.19686 0.92061 0.92019 0.92114 0.88365 0.92181 0.91730 0.91179 0.75899 0.91186 0.90389 0.87433 0.88471 0.88627 0.88757 0.88363 0.92535 0.91416 0.90714 0.89239 0.89281 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.48 37.16 0.32 -0.93 16 2 C -0.12 -1.19 3.26 -91.77 -0.30 -1.48 16 3 C -0.15 -1.38 9.09 37.16 0.34 -1.04 16 4 C 0.52 6.44 7.15 -10.99 -0.08 6.37 16 5 O -0.55 -8.42 15.98 5.55 0.09 -8.33 16 6 N -0.72 -8.35 5.28 -60.29 -0.32 -8.67 16 7 C 0.12 1.22 4.90 -4.04 -0.02 1.20 16 8 C 0.16 1.75 2.38 -67.93 -0.16 1.58 16 9 H 0.11 1.44 6.66 -51.93 -0.35 1.09 16 10 C -0.17 -1.55 4.83 -90.62 -0.44 -1.99 16 11 C -0.17 -1.53 10.18 -26.69 -0.27 -1.80 16 12 C -0.16 -1.67 10.13 -26.69 -0.27 -1.94 16 13 N -0.61 -7.57 2.13 -173.94 -0.37 -7.94 16 14 C 0.08 0.79 9.61 59.85 0.58 1.37 16 15 C 0.53 8.98 7.40 -10.98 -0.08 8.90 16 16 O -0.52 -10.49 15.19 5.56 0.08 -10.40 16 17 C -0.15 -2.84 4.71 36.00 0.17 -2.67 16 18 S -0.06 -1.54 20.57 -107.50 -2.21 -3.76 16 19 C -0.54 -14.75 9.50 30.94 0.29 -14.46 16 20 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.48 13.22 55.49 0.73 -24.75 16 23 Si 0.92 20.89 29.55 -169.99 -5.02 15.86 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 27 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.66 7.56 -51.93 -0.39 0.26 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.41 4.91 7.28 -40.82 -0.30 4.61 16 35 H 0.07 0.72 6.88 -51.93 -0.36 0.37 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.11 0.87 8.11 -51.93 -0.42 0.45 16 38 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.57 6.53 -51.93 -0.34 0.23 16 44 H 0.07 0.75 6.44 -51.93 -0.33 0.42 16 45 H 0.09 1.60 8.11 -51.91 -0.42 1.18 16 46 H 0.09 1.55 7.40 -51.92 -0.38 1.16 16 47 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 398.97 15.07 6.01 6.01 Total: -1.00 -33.21 398.97 -8.93 -42.14 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -7.90 Total: 4.73 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.02 Total: -4.91 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.05 Total: -41.35 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: 0.17 Total: -18.74 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.86 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.21 -8.93 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756406067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.631 kcal (2) G-P(sol) polarization free energy of solvation -33.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds