Wall clock time and date at job start Tue Mar 31 2020 15:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46772 * 2 1 4 4 C 1.50700 * 109.46949 * 119.99515 * 2 1 3 5 5 O 1.21287 * 119.99813 * 0.02562 * 4 2 1 6 6 N 1.34777 * 119.99865 * 180.02562 * 4 2 1 7 7 C 1.46506 * 119.99719 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.46890 * 179.97438 * 7 6 4 9 9 H 1.09004 * 109.47216 * 65.00366 * 8 7 6 10 10 C 1.52998 * 109.47216 * 185.00067 * 8 7 6 11 11 C 1.53001 * 117.49881 * 248.75127 * 10 8 7 12 12 C 1.52997 * 117.50083 * 180.09006 * 10 8 7 13 13 N 1.46499 * 109.47349 * 305.00352 * 8 7 6 14 14 C 1.46499 * 120.00136 * 299.99631 * 13 8 7 15 15 C 1.34784 * 119.99971 * 119.99826 * 13 8 7 16 16 O 1.21274 * 119.99897 * 359.72827 * 15 13 8 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 13 8 18 18 S 1.81006 * 109.46975 * 180.02562 * 17 15 13 19 19 C 1.76200 * 100.00155 * 179.97438 * 18 17 15 20 20 H 1.08005 * 119.99670 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00050 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99898 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 120.00049 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47316 * 89.99758 * 23 21 19 25 25 H 1.48498 * 109.47135 * 209.99728 * 23 21 19 26 26 H 1.48505 * 109.47071 * 329.99777 * 23 21 19 27 27 H 1.08990 * 109.47041 * 300.00267 * 1 2 3 28 28 H 1.08996 * 109.46573 * 60.00296 * 1 2 3 29 29 H 1.08999 * 109.46790 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47041 * 239.99733 * 2 1 3 31 31 H 1.09003 * 109.47322 * 60.00070 * 3 2 1 32 32 H 1.08998 * 109.47064 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47195 * 299.99532 * 3 2 1 34 34 H 0.96995 * 120.00040 * 0.02562 * 6 4 2 35 35 H 1.09006 * 109.47017 * 60.00410 * 7 6 4 36 36 H 1.09004 * 109.47148 * 300.00368 * 7 6 4 37 37 H 1.08994 * 115.55126 * 34.41984 * 10 8 7 38 38 H 1.08996 * 117.50295 * 359.97438 * 11 10 8 39 39 H 1.09000 * 117.49891 * 145.01892 * 11 10 8 40 40 H 1.08996 * 117.50211 * 214.98007 * 12 10 8 41 41 H 1.09002 * 117.49720 * 359.97438 * 12 10 8 42 42 H 1.08996 * 109.47008 * 270.00543 * 14 13 8 43 43 H 1.08997 * 109.46865 * 30.00228 * 14 13 8 44 44 H 1.08998 * 109.47058 * 149.99741 * 14 13 8 45 45 H 1.09005 * 109.47403 * 300.00056 * 17 15 13 46 46 H 1.09002 * 109.47422 * 60.00295 * 17 15 13 47 47 H 0.97005 * 120.00072 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 1.2442 -1.1716 2.0287 6 7 3.3575 -0.8330 1.4441 7 6 3.8457 -1.5240 2.6401 8 6 5.3757 -1.5239 2.6402 9 1 5.7390 -0.5002 2.7302 10 6 5.8857 -2.3517 3.8215 11 6 6.5848 -1.6039 4.9586 12 6 7.4007 -2.4725 3.9978 13 7 5.8642 -2.1071 1.3882 14 6 5.5105 -3.4840 1.0344 15 6 6.6391 -1.3768 0.5618 16 8 6.9278 -0.2353 0.8523 17 6 7.1420 -1.9769 -0.7258 18 16 8.1480 -0.7575 -1.6073 19 6 8.5920 -1.6978 -3.0297 20 1 8.2414 -2.7138 -3.1364 21 6 9.3923 -1.1329 -4.0130 22 7 9.8192 0.1054 -3.8832 23 14 9.8624 -2.1296 -5.5213 24 1 8.8446 -1.9293 -6.5840 25 1 11.1892 -1.6825 -6.0162 26 1 9.9271 -3.5692 -5.1629 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8901 34 1 3.9878 -0.4638 0.8060 35 1 3.4829 -2.5519 2.6394 36 1 3.4819 -1.0108 3.5303 37 1 5.2777 -3.2165 4.0869 38 1 6.6818 -0.5223 4.8650 39 1 6.4370 -1.9770 5.9721 40 1 7.7893 -3.4166 4.3795 41 1 8.0341 -1.9626 3.2719 42 1 6.2618 -4.1659 1.4327 43 1 4.5365 -3.7291 1.4578 44 1 5.4699 -3.5814 -0.0505 45 1 7.7478 -2.8558 -0.5048 46 1 6.2945 -2.2667 -1.3470 47 1 10.3782 0.5004 -4.5706 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756406067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:49 Heat of formation + Delta-G solvation = -79.144854 kcal Electronic energy + Delta-G solvation = -26516.623797 eV Core-core repulsion = 22825.375476 eV Total energy + Delta-G solvation = -3691.248320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.52271 -40.63207 -38.64580 -36.44250 -35.48553 -35.25338 -34.57126 -31.75506 -29.72230 -28.03305 -27.77980 -27.62008 -25.43018 -23.43089 -23.12910 -21.98995 -20.93881 -20.25802 -19.57852 -18.28610 -18.26600 -17.34956 -17.06874 -16.86694 -16.64855 -16.47097 -16.10597 -15.84187 -15.30687 -14.99001 -14.80665 -14.53729 -14.41214 -14.23440 -13.81160 -13.55646 -13.40205 -13.21743 -13.20386 -13.12266 -13.03891 -12.88835 -12.83072 -12.62564 -12.44230 -12.27978 -12.10344 -12.02040 -11.71365 -11.40567 -11.26815 -11.13130 -10.80654 -10.76323 -10.24542 -10.14878 -9.73379 -8.64195 -8.33665 -6.10667 1.25566 1.42551 1.45563 1.54824 1.56543 1.58922 1.96865 2.19590 2.28440 2.94208 3.00931 3.27466 3.43421 3.63731 3.76948 3.85303 3.96103 4.01382 4.04495 4.13708 4.17147 4.21045 4.29573 4.36263 4.44741 4.49632 4.61857 4.71463 4.72457 4.77806 4.79641 4.82450 4.91391 4.95506 5.01498 5.05922 5.22009 5.24146 5.24574 5.27701 5.36989 5.43208 5.53267 6.20543 6.24285 6.41022 7.08406 7.12473 7.14723 8.75194 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010035 B = 0.003639 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.655875 B = 7692.574812 C = 9601.581079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.116 4.116 3 C -0.142 4.142 4 C 0.517 3.483 5 O -0.578 6.578 6 N -0.722 5.722 7 C 0.120 3.880 8 C 0.163 3.837 9 H 0.084 0.916 10 C -0.158 4.158 11 C -0.163 4.163 12 C -0.173 4.173 13 N -0.597 5.597 14 C 0.073 3.927 15 C 0.536 3.464 16 O -0.559 6.559 17 C -0.125 4.125 18 S -0.143 6.143 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.017 3.983 22 N -0.910 5.910 23 Si 0.994 3.006 24 H -0.268 1.268 25 H -0.279 1.279 26 H -0.259 1.259 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.109 0.891 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.403 0.597 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.133 0.867 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.102 0.898 46 H 0.108 0.892 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 -7.088 12.757 20.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.137 4.137 3 C -0.200 4.200 4 C 0.304 3.696 5 O -0.458 6.458 6 N -0.373 5.373 7 C -0.005 4.005 8 C 0.060 3.940 9 H 0.102 0.898 10 C -0.177 4.177 11 C -0.200 4.200 12 C -0.210 4.210 13 N -0.331 5.331 14 C -0.069 4.069 15 C 0.323 3.677 16 O -0.437 6.437 17 C -0.276 4.276 18 S 0.084 5.916 19 C -0.694 4.694 20 H 0.099 0.901 21 C -0.188 4.188 22 N -0.547 5.547 23 Si 0.816 3.184 24 H -0.193 1.193 25 H -0.205 1.205 26 H -0.183 1.183 27 H 0.070 0.930 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.127 0.873 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.238 0.762 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.151 0.849 38 H 0.104 0.896 39 H 0.137 0.863 40 H 0.130 0.870 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.120 0.880 46 H 0.126 0.874 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.437 -5.622 13.702 20.683 hybrid contribution 0.697 -1.308 -1.535 2.133 sum -13.740 -6.930 12.167 19.618 Atomic orbital electron populations 1.21577 0.91947 1.02347 1.02569 1.21377 0.98723 0.97691 0.95896 1.21781 1.01004 0.93663 1.03559 1.21115 0.81742 0.78780 0.87915 1.90657 1.56036 1.50547 1.48559 1.46047 1.07198 1.58330 1.25728 1.21655 0.92159 0.98412 0.88234 1.20820 0.92270 0.98114 0.82836 0.89778 1.22474 0.95874 1.02616 0.96776 1.23084 1.02791 0.98461 0.95694 1.22811 0.92927 1.02581 1.02714 1.47813 1.50145 1.15119 1.20009 1.21998 1.02227 0.80552 1.02159 1.20074 0.77616 0.85373 0.84587 1.90695 1.58195 1.19489 1.75330 1.23383 1.03656 1.03538 0.97040 1.85523 1.63426 1.20480 1.22183 1.23189 1.37383 1.02028 1.06779 0.90106 1.26043 0.94810 0.96277 1.01673 1.70170 1.34105 1.14772 1.35616 0.85022 0.77704 0.78542 0.77163 1.19287 1.20465 1.18304 0.92978 0.90002 0.92800 0.87329 0.92352 0.92834 0.89680 0.76188 0.89977 0.90159 0.84908 0.89610 0.86277 0.87044 0.91685 0.91017 0.89225 0.90585 0.87969 0.87409 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.48 71.99 0.61 -1.65 16 2 C -0.12 -2.22 3.26 -11.54 -0.04 -2.26 16 3 C -0.14 -2.59 9.09 71.98 0.65 -1.93 16 4 C 0.52 12.38 7.15 87.66 0.63 13.01 16 5 O -0.58 -17.28 15.98 -3.05 -0.05 -17.33 16 6 N -0.72 -16.01 5.28 -463.04 -2.45 -18.46 16 7 C 0.12 2.34 4.90 86.38 0.42 2.76 16 8 C 0.16 3.43 2.38 44.99 0.11 3.53 16 9 H 0.08 2.26 6.66 -2.38 -0.02 2.25 16 10 C -0.16 -2.60 4.83 -10.80 -0.05 -2.66 16 11 C -0.16 -2.67 10.18 30.62 0.31 -2.36 16 12 C -0.17 -3.32 10.13 30.62 0.31 -3.01 16 13 N -0.60 -13.96 2.13 -822.62 -1.75 -15.71 16 14 C 0.07 1.22 9.61 127.77 1.23 2.45 16 15 C 0.54 18.08 7.40 87.65 0.65 18.73 16 16 O -0.56 -23.55 15.19 -3.01 -0.05 -23.60 16 17 C -0.13 -4.67 4.71 71.23 0.34 -4.33 16 18 S -0.14 -7.60 20.57 -56.49 -1.16 -8.76 16 19 C -0.55 -30.19 9.50 67.95 0.65 -29.54 16 20 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 21 C 0.02 0.94 5.49 84.86 0.47 1.41 16 22 N -0.91 -54.61 13.22 21.65 0.29 -54.33 16 23 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 24 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 25 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 26 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 27 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 30 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.05 1.09 7.56 -2.39 -0.02 1.07 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.40 9.62 7.28 -92.71 -0.68 8.94 16 35 H 0.08 1.45 6.88 -2.38 -0.02 1.44 16 36 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.13 1.61 8.11 -2.39 -0.02 1.59 16 38 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 39 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.09 1.17 6.53 -2.39 -0.02 1.16 16 44 H 0.08 1.30 6.44 -2.39 -0.02 1.29 16 45 H 0.10 3.55 8.11 -2.39 -0.02 3.53 16 46 H 0.11 3.60 7.40 -2.39 -0.02 3.59 16 47 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 Total: -1.00 -74.30 398.97 3.42 -70.88 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.28 Total: 28.57 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.28 Total: -5.85 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -3.91 Total: -88.49 kcal Atomic # 8 Polarization: -40.83 SS G_CDS: -0.09 Total: -40.92 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Atomic # 16 Polarization: -7.60 SS G_CDS: -1.16 Total: -8.76 kcal Total: -74.30 3.42 -70.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756406067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.265 kcal (2) G-P(sol) polarization free energy of solvation -74.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds