Wall clock time and date at job start Tue Mar 31 2020 15:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52989 * 109.47407 * 2 1 4 4 H 1.09004 * 115.56709 * 29.30779 * 3 2 1 5 5 C 1.53000 * 117.50008 * 243.62046 * 3 2 1 6 6 C 1.52997 * 60.00347 * 252.51154 * 5 3 2 7 7 H 1.08997 * 117.50044 * 107.48590 * 6 5 3 8 8 C 1.50698 * 117.51636 * 252.52170 * 6 5 3 9 9 O 1.21279 * 120.00572 * 68.62479 * 8 6 5 10 10 N 1.34779 * 119.99924 * 248.62494 * 8 6 5 11 11 C 1.46504 * 119.99728 * 359.97438 * 10 8 6 12 12 C 1.46498 * 120.00504 * 180.02562 * 10 8 6 13 13 C 1.53001 * 109.47348 * 89.99585 * 12 10 8 14 14 H 1.08998 * 109.47130 * 65.00121 * 13 12 10 15 15 C 1.52995 * 109.47328 * 185.00234 * 13 12 10 16 16 N 1.46500 * 109.47191 * 305.00543 * 13 12 10 17 17 C 1.34780 * 120.00053 * 154.99875 * 16 13 12 18 18 O 1.21273 * 119.99787 * 359.97438 * 17 16 13 19 19 C 1.50703 * 119.99935 * 179.97438 * 17 16 13 20 20 S 1.80994 * 109.46867 * 179.97438 * 19 17 16 21 21 C 1.76208 * 99.99671 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00128 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99447 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00550 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99593 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47130 * 89.99835 * 25 23 21 27 27 H 1.48498 * 109.47374 * 209.99945 * 25 23 21 28 28 H 1.48500 * 109.47384 * 330.00349 * 25 23 21 29 29 H 1.08990 * 109.47578 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46886 * 300.00550 * 1 2 3 31 31 H 1.09000 * 109.46731 * 60.00047 * 1 2 3 32 32 H 1.09004 * 109.46886 * 239.99450 * 2 1 3 33 33 H 1.09002 * 109.46769 * 120.00487 * 2 1 3 34 34 H 1.09002 * 117.49696 * 0.02562 * 5 3 2 35 35 H 1.09002 * 117.50343 * 145.02258 * 5 3 2 36 36 H 1.09000 * 109.47109 * 90.00118 * 11 10 8 37 37 H 1.09009 * 109.47012 * 210.00323 * 11 10 8 38 38 H 1.09004 * 109.47102 * 329.99622 * 11 10 8 39 39 H 1.08998 * 109.47116 * 210.00100 * 12 10 8 40 40 H 1.09004 * 109.46760 * 329.99683 * 12 10 8 41 41 H 1.09000 * 109.47327 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47213 * 300.00324 * 15 13 12 43 43 H 1.09004 * 109.46768 * 60.00111 * 15 13 12 44 44 H 0.97000 * 119.99833 * 334.99859 * 16 13 12 45 45 H 1.09001 * 109.46849 * 300.00152 * 19 17 16 46 46 H 1.08998 * 109.46844 * 59.99861 * 19 17 16 47 47 H 0.96997 * 119.99682 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8441 1.9074 -1.2158 6 6 3.5503 1.6577 0.1183 7 1 4.1804 0.7717 0.1961 8 6 4.0230 2.8615 0.8918 9 8 3.2161 3.6160 1.3922 10 7 5.3426 3.0997 1.0276 11 6 6.3174 2.1879 0.4236 12 6 5.8023 4.2696 1.7801 13 6 5.9794 3.8919 3.2521 14 1 6.7789 3.1570 3.3450 15 6 6.3384 5.1409 4.0595 16 7 4.7305 3.3220 3.7637 17 6 4.7555 2.4780 4.8143 18 8 5.8118 2.1901 5.3358 19 6 3.4707 1.8922 5.3410 20 16 3.8329 0.8063 6.7429 21 6 2.2024 0.2748 7.1474 22 1 1.3601 0.6316 6.5733 23 6 2.0006 -0.6026 8.2038 24 7 3.0272 -1.0379 8.9033 25 14 0.2721 -1.1667 8.6322 26 1 -0.0487 -2.4008 7.8711 27 1 0.1895 -1.4474 10.0881 28 1 -0.6988 -0.1003 8.2778 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0093 1.1858 -2.0159 35 1 2.7216 2.9426 -1.5344 36 1 6.5471 2.5203 -0.5887 37 1 7.2295 2.1839 1.0206 38 1 5.9009 1.1812 0.3899 39 1 6.7551 4.6106 1.3752 40 1 5.0651 5.0682 1.6960 41 1 6.4650 4.8718 5.1081 42 1 7.2676 5.5649 3.6789 43 1 5.5387 5.8758 3.9666 44 1 3.8856 3.5520 3.3464 45 1 2.8106 2.6968 5.6650 46 1 2.9836 1.3177 4.5531 47 1 2.8860 -1.6507 9.6417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756498337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:04 Heat of formation + Delta-G solvation = -59.935728 kcal Electronic energy + Delta-G solvation = -26421.043114 eV Core-core repulsion = 22730.627764 eV Total energy + Delta-G solvation = -3690.415350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.63791 -39.09728 -37.55310 -36.15394 -34.62597 -32.38120 -32.22489 -31.38511 -28.51575 -27.83582 -26.68766 -25.43218 -24.19319 -23.66232 -21.63337 -20.68884 -20.10534 -19.21871 -17.86958 -17.40517 -16.65796 -16.27149 -16.23606 -15.30406 -14.91906 -14.76285 -14.71304 -14.57892 -14.20308 -14.04936 -13.47931 -13.20758 -13.17117 -12.95590 -12.84291 -12.62311 -12.55726 -12.41438 -12.31540 -12.16484 -11.91369 -11.73468 -11.48863 -11.21758 -11.14441 -11.02129 -10.97099 -10.71555 -10.52929 -10.22952 -9.95407 -9.76059 -9.28603 -9.02599 -8.97784 -8.68333 -8.17331 -6.43914 -6.17040 -3.86615 2.24743 2.66814 3.13991 3.22148 3.25548 3.31425 3.38266 3.55844 3.85287 4.16156 4.25519 4.48165 4.49578 4.66547 4.71444 4.84459 4.96653 4.99053 5.12208 5.16397 5.18108 5.20504 5.24555 5.25371 5.34959 5.37213 5.41819 5.50081 5.58894 5.62799 5.67526 5.76920 5.83010 5.94916 5.98260 5.99718 6.03010 6.09861 6.20419 6.26271 6.29421 6.84052 7.07966 7.64922 7.86815 8.01166 8.40719 8.76693 9.28479 10.90459 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009264 B = 0.003953 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.734732 B = 7082.031819 C = 9495.909039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.113 4.113 4 H 0.119 0.881 5 C -0.148 4.148 6 C -0.194 4.194 7 H 0.125 0.875 8 C 0.550 3.450 9 O -0.540 6.540 10 N -0.610 5.610 11 C 0.078 3.922 12 C 0.106 3.894 13 C 0.127 3.873 14 H 0.087 0.913 15 C -0.162 4.162 16 N -0.731 5.731 17 C 0.532 3.468 18 O -0.524 6.524 19 C -0.151 4.151 20 S -0.061 6.061 21 C -0.533 4.533 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.869 5.869 25 Si 0.917 3.083 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.406 0.594 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 8.057 -23.868 25.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.131 4.131 4 H 0.137 0.863 5 C -0.185 4.185 6 C -0.215 4.215 7 H 0.143 0.857 8 C 0.340 3.660 9 O -0.418 6.418 10 N -0.342 5.342 11 C -0.065 4.065 12 C -0.017 4.017 13 C 0.020 3.980 14 H 0.105 0.895 15 C -0.221 4.221 16 N -0.389 5.389 17 C 0.318 3.682 18 O -0.399 6.399 19 C -0.301 4.301 20 S 0.166 5.834 21 C -0.681 4.681 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.504 5.504 25 Si 0.744 3.256 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.076 0.924 44 H 0.245 0.755 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.938 7.874 -22.605 24.442 hybrid contribution -2.437 0.019 -0.466 2.481 sum 2.501 7.893 -23.071 24.512 Atomic orbital electron populations 1.21733 0.95054 1.01823 1.02088 1.21174 0.96470 0.93436 1.02358 1.22504 0.91173 0.99025 1.00432 0.86307 1.23083 1.02269 1.02937 0.90252 1.22339 0.98171 0.98886 1.02079 0.85698 1.19691 0.81653 0.85378 0.79307 1.90617 1.53483 1.48682 1.49026 1.47703 1.05970 1.26940 1.53612 1.21862 0.92835 0.93828 0.97989 1.21893 1.01356 0.88199 0.90255 1.21276 0.88628 0.96126 0.91926 0.89529 1.22132 1.01206 0.97070 1.01680 1.46316 1.10006 1.48377 1.34213 1.20286 0.90991 0.77732 0.79146 1.90666 1.32106 1.59631 1.57522 1.23506 0.97643 1.03977 1.05008 1.85306 1.12199 1.53868 1.32025 1.22882 0.92927 1.32708 1.19624 0.90985 1.24974 0.98072 0.95345 0.95127 1.70023 1.29994 1.31134 1.19287 0.86189 0.82761 0.79003 0.77692 1.20288 1.20769 1.19673 0.92511 0.92247 0.92749 0.91780 0.90947 0.87874 0.88470 0.92350 0.90759 0.90669 0.89011 0.89215 0.91278 0.91857 0.92354 0.75535 0.89439 0.89566 0.92267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.87 37.16 0.37 -0.95 16 2 C -0.10 -0.87 6.21 -26.73 -0.17 -1.04 16 3 C -0.11 -1.11 5.25 -90.62 -0.48 -1.58 16 4 H 0.12 1.38 7.60 -51.93 -0.39 0.98 16 5 C -0.15 -1.15 9.88 -26.73 -0.26 -1.41 16 6 C -0.19 -1.86 5.01 -91.77 -0.46 -2.32 16 7 H 0.13 1.06 6.44 -51.93 -0.33 0.72 16 8 C 0.55 6.48 6.75 -10.99 -0.07 6.41 16 9 O -0.54 -7.88 13.57 5.56 0.08 -7.81 16 10 N -0.61 -5.98 2.77 -181.56 -0.50 -6.49 16 11 C 0.08 0.54 10.27 59.85 0.61 1.15 16 12 C 0.11 1.00 5.14 -4.04 -0.02 0.98 16 13 C 0.13 1.59 2.88 -67.93 -0.20 1.39 16 14 H 0.09 1.20 7.58 -51.93 -0.39 0.80 16 15 C -0.16 -1.85 9.48 37.15 0.35 -1.50 16 16 N -0.73 -11.57 4.48 -53.81 -0.24 -11.81 16 17 C 0.53 10.83 7.81 -10.98 -0.09 10.74 16 18 O -0.52 -12.30 15.52 5.56 0.09 -12.22 16 19 C -0.15 -3.34 6.16 36.01 0.22 -3.12 16 20 S -0.06 -1.70 20.57 -107.50 -2.21 -3.92 16 21 C -0.53 -15.66 9.50 30.94 0.29 -15.36 16 22 H 0.07 2.03 7.80 -52.49 -0.41 1.62 16 23 C 0.07 2.15 5.49 -17.43 -0.10 2.05 16 24 N -0.87 -26.63 13.22 55.49 0.73 -25.90 16 25 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 28 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.48 7.88 -51.93 -0.41 0.07 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.10 0.61 8.03 -51.93 -0.42 0.19 16 35 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.48 8.07 -51.92 -0.42 0.06 16 38 H 0.07 0.50 6.00 -51.93 -0.31 0.19 16 39 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 40 H 0.09 0.91 7.42 -51.93 -0.39 0.52 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.41 6.38 5.83 -40.82 -0.24 6.14 16 45 H 0.09 1.86 8.14 -51.92 -0.42 1.43 16 46 H 0.09 1.83 8.14 -51.92 -0.42 1.40 16 47 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 399.31 15.07 6.02 6.02 Total: -1.00 -35.81 399.31 -8.97 -44.78 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.92 Total: 5.05 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 0.01 Total: -4.56 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: -0.01 Total: -44.20 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: 0.16 Total: -20.02 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.81 -8.97 -44.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756498337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.153 kcal (2) G-P(sol) polarization free energy of solvation -35.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds