Wall clock time and date at job start Tue Mar 31 2020 15:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52989 * 109.47407 * 2 1 4 4 H 1.09004 * 115.56709 * 29.30779 * 3 2 1 5 5 C 1.53000 * 117.50008 * 243.62046 * 3 2 1 6 6 C 1.52997 * 60.00347 * 252.51154 * 5 3 2 7 7 H 1.08997 * 117.50044 * 107.48590 * 6 5 3 8 8 C 1.50698 * 117.51636 * 252.52170 * 6 5 3 9 9 O 1.21279 * 120.00572 * 68.62479 * 8 6 5 10 10 N 1.34779 * 119.99924 * 248.62494 * 8 6 5 11 11 C 1.46504 * 119.99728 * 359.97438 * 10 8 6 12 12 C 1.46498 * 120.00504 * 180.02562 * 10 8 6 13 13 C 1.53001 * 109.47348 * 89.99585 * 12 10 8 14 14 H 1.08998 * 109.47130 * 65.00121 * 13 12 10 15 15 C 1.52995 * 109.47328 * 185.00234 * 13 12 10 16 16 N 1.46500 * 109.47191 * 305.00543 * 13 12 10 17 17 C 1.34780 * 120.00053 * 154.99875 * 16 13 12 18 18 O 1.21273 * 119.99787 * 359.97438 * 17 16 13 19 19 C 1.50703 * 119.99935 * 179.97438 * 17 16 13 20 20 S 1.80994 * 109.46867 * 179.97438 * 19 17 16 21 21 C 1.76208 * 99.99671 * 180.02562 * 20 19 17 22 22 H 1.07994 * 120.00128 * 0.02562 * 21 20 19 23 23 C 1.38799 * 119.99447 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00550 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99593 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47130 * 89.99835 * 25 23 21 27 27 H 1.48498 * 109.47374 * 209.99945 * 25 23 21 28 28 H 1.48500 * 109.47384 * 330.00349 * 25 23 21 29 29 H 1.08990 * 109.47578 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46886 * 300.00550 * 1 2 3 31 31 H 1.09000 * 109.46731 * 60.00047 * 1 2 3 32 32 H 1.09004 * 109.46886 * 239.99450 * 2 1 3 33 33 H 1.09002 * 109.46769 * 120.00487 * 2 1 3 34 34 H 1.09002 * 117.49696 * 0.02562 * 5 3 2 35 35 H 1.09002 * 117.50343 * 145.02258 * 5 3 2 36 36 H 1.09000 * 109.47109 * 90.00118 * 11 10 8 37 37 H 1.09009 * 109.47012 * 210.00323 * 11 10 8 38 38 H 1.09004 * 109.47102 * 329.99622 * 11 10 8 39 39 H 1.08998 * 109.47116 * 210.00100 * 12 10 8 40 40 H 1.09004 * 109.46760 * 329.99683 * 12 10 8 41 41 H 1.09000 * 109.47327 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.47213 * 300.00324 * 15 13 12 43 43 H 1.09004 * 109.46768 * 60.00111 * 15 13 12 44 44 H 0.97000 * 119.99833 * 334.99859 * 16 13 12 45 45 H 1.09001 * 109.46849 * 300.00152 * 19 17 16 46 46 H 1.08998 * 109.46844 * 59.99861 * 19 17 16 47 47 H 0.96997 * 119.99682 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8441 1.9074 -1.2158 6 6 3.5503 1.6577 0.1183 7 1 4.1804 0.7717 0.1961 8 6 4.0230 2.8615 0.8918 9 8 3.2161 3.6160 1.3922 10 7 5.3426 3.0997 1.0276 11 6 6.3174 2.1879 0.4236 12 6 5.8023 4.2696 1.7801 13 6 5.9794 3.8919 3.2521 14 1 6.7789 3.1570 3.3450 15 6 6.3384 5.1409 4.0595 16 7 4.7305 3.3220 3.7637 17 6 4.7555 2.4780 4.8143 18 8 5.8118 2.1901 5.3358 19 6 3.4707 1.8922 5.3410 20 16 3.8329 0.8063 6.7429 21 6 2.2024 0.2748 7.1474 22 1 1.3601 0.6316 6.5733 23 6 2.0006 -0.6026 8.2038 24 7 3.0272 -1.0379 8.9033 25 14 0.2721 -1.1667 8.6322 26 1 -0.0487 -2.4008 7.8711 27 1 0.1895 -1.4474 10.0881 28 1 -0.6988 -0.1003 8.2778 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0093 1.1858 -2.0159 35 1 2.7216 2.9426 -1.5344 36 1 6.5471 2.5203 -0.5887 37 1 7.2295 2.1839 1.0206 38 1 5.9009 1.1812 0.3899 39 1 6.7551 4.6106 1.3752 40 1 5.0651 5.0682 1.6960 41 1 6.4650 4.8718 5.1081 42 1 7.2676 5.5649 3.6789 43 1 5.5387 5.8758 3.9666 44 1 3.8856 3.5520 3.3464 45 1 2.8106 2.6968 5.6650 46 1 2.9836 1.3177 4.5531 47 1 2.8860 -1.6507 9.6417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756498337.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:03 Heat of formation + Delta-G solvation = -82.816118 kcal Electronic energy + Delta-G solvation = -26422.035282 eV Core-core repulsion = 22730.627764 eV Total energy + Delta-G solvation = -3691.407518 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56120 -40.51263 -38.41031 -37.13978 -35.73132 -34.61498 -33.02754 -32.67153 -30.12728 -28.59321 -27.68802 -27.42105 -24.94440 -24.41332 -22.77904 -21.51805 -21.40646 -20.07698 -19.81956 -18.39787 -17.77171 -17.66548 -17.25630 -16.90746 -16.44779 -16.22856 -15.94313 -15.57419 -15.38284 -15.02767 -14.76252 -14.61865 -14.34564 -14.02738 -13.87100 -13.61081 -13.43641 -13.32993 -13.23348 -13.19491 -13.02948 -12.97866 -12.91190 -12.74393 -12.60395 -12.17950 -12.15255 -11.93207 -11.75845 -11.25704 -11.16844 -10.98216 -10.96824 -10.77516 -10.34522 -10.18443 -9.67684 -8.70295 -8.37393 -6.15948 1.23128 1.39292 1.40103 1.43410 1.55235 1.56641 1.93511 2.24158 2.32214 2.83563 2.96423 3.28790 3.45378 3.72016 3.75865 3.83081 3.94638 4.02811 4.09700 4.18629 4.23663 4.26943 4.35332 4.40628 4.44928 4.47674 4.54965 4.64024 4.70504 4.76804 4.78547 4.89799 4.90999 4.97408 5.05151 5.14719 5.20719 5.22459 5.27292 5.38541 5.41700 5.47644 5.58357 6.17055 6.29422 6.45899 7.03613 7.08991 7.21806 8.72011 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009264 B = 0.003953 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3021.734732 B = 7082.031819 C = 9495.909039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.130 4.130 4 H 0.093 0.907 5 C -0.120 4.120 6 C -0.202 4.202 7 H 0.137 0.863 8 C 0.539 3.461 9 O -0.578 6.578 10 N -0.610 5.610 11 C 0.071 3.929 12 C 0.112 3.888 13 C 0.121 3.879 14 H 0.075 0.925 15 C -0.156 4.156 16 N -0.711 5.711 17 C 0.535 3.465 18 O -0.560 6.560 19 C -0.130 4.130 20 S -0.135 6.135 21 C -0.551 4.551 22 H 0.076 0.924 23 C 0.018 3.982 24 N -0.909 5.909 25 Si 0.997 3.003 26 H -0.265 1.265 27 H -0.274 1.274 28 H -0.262 1.262 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.130 0.870 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.133 0.867 40 H 0.085 0.915 41 H 0.035 0.965 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.409 0.591 45 H 0.096 0.904 46 H 0.095 0.905 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.244 8.396 -26.413 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.149 4.149 4 H 0.112 0.888 5 C -0.157 4.157 6 C -0.222 4.222 7 H 0.155 0.845 8 C 0.329 3.671 9 O -0.459 6.459 10 N -0.341 5.341 11 C -0.071 4.071 12 C -0.011 4.011 13 C 0.016 3.984 14 H 0.094 0.906 15 C -0.215 4.215 16 N -0.368 5.368 17 C 0.320 3.680 18 O -0.439 6.439 19 C -0.281 4.281 20 S 0.092 5.908 21 C -0.699 4.699 22 H 0.095 0.905 23 C -0.187 4.187 24 N -0.545 5.545 25 Si 0.819 3.181 26 H -0.190 1.190 27 H -0.199 1.199 28 H -0.186 1.186 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.148 0.852 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.150 0.850 40 H 0.104 0.896 41 H 0.054 0.946 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.248 0.752 45 H 0.115 0.885 46 H 0.113 0.887 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.680 8.235 -25.203 26.924 hybrid contribution -2.279 -0.005 0.242 2.292 sum 2.401 8.230 -24.960 26.392 Atomic orbital electron populations 1.21736 0.95102 1.02084 1.01796 1.21147 0.96450 0.92953 1.02480 1.22438 0.91103 0.98945 1.02384 0.88848 1.23154 0.99333 1.03477 0.89750 1.22401 0.97977 0.98543 1.03320 0.84494 1.20139 0.82098 0.85607 0.79214 1.90592 1.54566 1.50042 1.50673 1.47856 1.05931 1.27268 1.53005 1.22094 0.92197 0.93459 0.99303 1.21935 1.03267 0.87943 0.87968 1.21606 0.86420 0.96119 0.94266 0.90647 1.22082 1.03295 0.96622 0.99516 1.46249 1.11721 1.46575 1.32279 1.19947 0.89572 0.78403 0.80064 1.90651 1.32858 1.61314 1.59040 1.23344 0.99131 1.03007 1.02606 1.85385 1.13657 1.56082 1.35644 1.23182 0.92890 1.33425 1.20367 0.90544 1.26089 1.03057 0.94986 0.94584 1.70169 1.32750 1.31751 1.19873 0.84978 0.76560 0.78862 0.77743 1.19010 1.19872 1.18581 0.91931 0.93991 0.91614 0.89601 0.92783 0.85156 0.88621 0.89732 0.90155 0.90547 0.84962 0.89628 0.94609 0.88325 0.91659 0.75161 0.88550 0.88690 0.91840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.87 71.98 0.71 -1.85 16 2 C -0.09 -1.60 6.21 30.59 0.19 -1.41 16 3 C -0.13 -2.47 5.25 -10.80 -0.06 -2.52 16 4 H 0.09 2.26 7.60 -2.38 -0.02 2.24 16 5 C -0.12 -1.59 9.88 30.59 0.30 -1.28 16 6 C -0.20 -3.59 5.01 -11.54 -0.06 -3.65 16 7 H 0.14 2.07 6.44 -2.39 -0.02 2.05 16 8 C 0.54 12.13 6.75 87.66 0.59 12.72 16 9 O -0.58 -16.78 13.57 -3.03 -0.04 -16.83 16 10 N -0.61 -10.70 2.77 -846.73 -2.35 -13.05 16 11 C 0.07 0.78 10.27 127.77 1.31 2.09 16 12 C 0.11 1.84 5.14 86.38 0.44 2.28 16 13 C 0.12 2.89 2.88 44.99 0.13 3.02 16 14 H 0.08 2.02 7.58 -2.39 -0.02 2.00 16 15 C -0.16 -3.38 9.48 71.98 0.68 -2.70 16 16 N -0.71 -22.46 4.48 -442.54 -1.98 -24.45 16 17 C 0.53 22.20 7.81 87.66 0.68 22.89 16 18 O -0.56 -27.12 15.52 -3.01 -0.05 -27.17 16 19 C -0.13 -5.89 6.16 71.24 0.44 -5.45 16 20 S -0.13 -7.86 20.57 -56.49 -1.16 -9.02 16 21 C -0.55 -32.94 9.50 67.95 0.65 -32.30 16 22 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 23 C 0.02 1.04 5.49 84.86 0.47 1.51 16 24 N -0.91 -56.77 13.22 21.65 0.29 -56.48 16 25 Si 1.00 44.85 29.55 68.60 2.03 46.88 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 28 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 1.08 7.88 -2.39 -0.02 1.06 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.13 1.03 8.03 -2.39 -0.02 1.02 16 35 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.08 0.81 8.07 -2.38 -0.02 0.79 16 38 H 0.08 0.83 6.00 -2.38 -0.01 0.82 16 39 H 0.13 1.16 8.07 -2.39 -0.02 1.14 16 40 H 0.09 1.55 7.42 -2.38 -0.02 1.53 16 41 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 42 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.31 8.14 -2.38 -0.02 1.30 16 44 H 0.41 12.81 5.83 -92.71 -0.54 12.27 16 45 H 0.10 4.17 8.14 -2.39 -0.02 4.15 16 46 H 0.09 4.11 8.14 -2.40 -0.02 4.09 16 47 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -80.95 399.31 3.63 -77.32 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: 0.41 Total: 29.42 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 6.48 Total: -6.63 kcal Atomic # 7 Polarization: -89.94 SS G_CDS: -4.05 Total: -93.98 kcal Atomic # 8 Polarization: -43.91 SS G_CDS: -0.09 Total: -44.00 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.16 Total: -9.02 kcal Total: -80.95 3.63 -77.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756498337.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.492 kcal (2) G-P(sol) polarization free energy of solvation -80.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds