Wall clock time and date at job start Tue Mar 31 2020 15:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47003 * 2 1 4 4 H 1.08992 * 115.56550 * 29.31097 * 3 2 1 5 5 C 1.53006 * 117.49724 * 243.61925 * 3 2 1 6 6 C 1.52999 * 60.00089 * 252.51316 * 5 3 2 7 7 H 1.09002 * 117.49803 * 107.49109 * 6 5 3 8 8 C 1.50700 * 117.51845 * 252.51832 * 6 5 3 9 9 O 1.21288 * 119.99910 * 68.71707 * 8 6 5 10 10 N 1.34770 * 119.99999 * 248.71846 * 8 6 5 11 11 C 1.46496 * 120.00437 * 0.02562 * 10 8 6 12 12 C 1.46511 * 119.99717 * 179.97438 * 10 8 6 13 13 C 1.52998 * 109.46816 * 90.00231 * 12 10 8 14 14 H 1.09008 * 109.46910 * 294.99396 * 13 12 10 15 15 C 1.53005 * 109.46928 * 174.99956 * 13 12 10 16 16 N 1.46495 * 109.47543 * 55.00055 * 13 12 10 17 17 C 1.34782 * 119.99954 * 205.00223 * 16 13 12 18 18 O 1.21278 * 119.99910 * 359.97438 * 17 16 13 19 19 C 1.50697 * 119.99797 * 179.97438 * 17 16 13 20 20 S 1.80998 * 109.47010 * 179.97438 * 19 17 16 21 21 C 1.76197 * 100.00036 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00006 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00205 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99880 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00489 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47212 * 89.99846 * 25 23 21 27 27 H 1.48498 * 109.47560 * 210.00360 * 25 23 21 28 28 H 1.48503 * 109.46681 * 330.00000 * 25 23 21 29 29 H 1.08997 * 109.47429 * 300.00258 * 1 2 3 30 30 H 1.09002 * 109.47348 * 60.00181 * 1 2 3 31 31 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47319 * 240.00010 * 2 1 3 33 33 H 1.08994 * 109.47541 * 120.00106 * 2 1 3 34 34 H 1.09003 * 117.49619 * 145.02013 * 5 3 2 35 35 H 1.08995 * 117.50015 * 0.02562 * 5 3 2 36 36 H 1.08996 * 109.46812 * 89.99835 * 11 10 8 37 37 H 1.08997 * 109.47143 * 209.99860 * 11 10 8 38 38 H 1.09000 * 109.46919 * 330.00053 * 11 10 8 39 39 H 1.08998 * 109.46674 * 209.99669 * 12 10 8 40 40 H 1.09000 * 109.47195 * 330.00141 * 12 10 8 41 41 H 1.08997 * 109.46832 * 299.99932 * 15 13 12 42 42 H 1.09006 * 109.47065 * 59.99711 * 15 13 12 43 43 H 1.09001 * 109.47174 * 179.97438 * 15 13 12 44 44 H 0.96993 * 120.00021 * 24.99776 * 16 13 12 45 45 H 1.08999 * 109.47360 * 299.99976 * 19 17 16 46 46 H 1.09006 * 109.47147 * 60.00227 * 19 17 16 47 47 H 0.97003 * 120.00291 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8439 1.9076 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7719 0.1961 8 6 4.0228 2.8617 0.8918 9 8 3.2158 3.6154 1.3936 10 7 5.3423 3.1008 1.0261 11 6 6.3172 2.1909 0.4195 12 6 5.8018 4.2715 1.7777 13 6 5.9809 3.8944 3.2496 14 1 5.0125 3.6378 3.6793 15 6 6.5785 5.0796 4.0106 16 7 6.8815 2.7436 3.3529 17 6 6.8107 1.9263 4.4223 18 8 6.0018 2.1439 5.2993 19 6 7.7367 0.7422 4.5282 20 16 7.3991 -0.1521 6.0652 21 6 8.5880 -1.4459 5.9338 22 1 9.2410 -1.4941 5.0750 23 6 8.6852 -2.4033 6.9341 24 7 7.8889 -2.3449 7.9806 25 14 9.9460 -3.7746 6.7953 26 1 11.2183 -3.3432 7.4280 27 1 9.4366 -4.9872 7.4847 28 1 10.1854 -4.0836 5.3626 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.7212 2.9428 -1.5344 35 1 3.0092 1.1860 -2.0159 36 1 6.5451 2.5250 -0.5926 37 1 7.2300 2.1870 1.0151 38 1 5.9016 1.1839 0.3849 39 1 6.7540 4.6130 1.3717 40 1 5.0640 5.0695 1.6942 41 1 7.5468 5.3362 3.5809 42 1 5.9085 5.9359 3.9338 43 1 6.7057 4.8111 5.0594 44 1 7.5286 2.5697 2.6516 45 1 7.5766 0.0785 3.6786 46 1 8.7704 1.0882 4.5292 47 1 7.9571 -3.0138 8.6799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756498338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:10 Heat of formation + Delta-G solvation = -56.470597 kcal Electronic energy + Delta-G solvation = -25903.420012 eV Core-core repulsion = 22213.154921 eV Total energy + Delta-G solvation = -3690.265091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55939 -39.27638 -37.57591 -36.26853 -34.49688 -32.43980 -32.31142 -31.59867 -28.69325 -27.75034 -26.71830 -25.49536 -24.23809 -23.66398 -21.68793 -20.73838 -20.31309 -19.23803 -17.87147 -17.52254 -16.58377 -16.40324 -16.13804 -15.42740 -15.05189 -14.83095 -14.81209 -14.54197 -14.36697 -14.06672 -13.47353 -13.25751 -13.15841 -13.07459 -12.83226 -12.71772 -12.57243 -12.45953 -12.36920 -12.13349 -11.96957 -11.82103 -11.55596 -11.27160 -11.14065 -11.07629 -11.03231 -10.77447 -10.55318 -10.25288 -9.93006 -9.82791 -9.37597 -9.09761 -9.05500 -8.73080 -8.23728 -6.50764 -6.22518 -3.93161 2.29855 2.67217 3.03858 3.12518 3.21025 3.26942 3.30820 3.54922 3.70567 4.13965 4.19277 4.46401 4.47840 4.57844 4.71381 4.83335 4.90412 4.93272 5.08452 5.12290 5.13314 5.16679 5.19079 5.23451 5.34352 5.37089 5.40051 5.47037 5.54098 5.60407 5.65074 5.70536 5.75663 5.86261 5.86435 5.91276 6.04996 6.08982 6.10736 6.14706 6.31466 6.66943 7.09862 7.58030 7.70909 7.98799 8.33831 8.64520 9.22546 10.84840 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.002985 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.747656 B = 9379.311310 C =10926.206644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.115 4.115 4 H 0.117 0.883 5 C -0.148 4.148 6 C -0.193 4.193 7 H 0.126 0.874 8 C 0.547 3.453 9 O -0.537 6.537 10 N -0.611 5.611 11 C 0.079 3.921 12 C 0.110 3.890 13 C 0.127 3.873 14 H 0.092 0.908 15 C -0.161 4.161 16 N -0.732 5.732 17 C 0.531 3.469 18 O -0.514 6.514 19 C -0.153 4.153 20 S -0.059 6.059 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.392 0.608 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.467 10.437 -21.983 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.134 4.134 4 H 0.135 0.865 5 C -0.185 4.185 6 C -0.213 4.213 7 H 0.143 0.857 8 C 0.335 3.665 9 O -0.414 6.414 10 N -0.343 5.343 11 C -0.065 4.065 12 C -0.014 4.014 13 C 0.020 3.980 14 H 0.110 0.890 15 C -0.220 4.220 16 N -0.389 5.389 17 C 0.317 3.683 18 O -0.388 6.388 19 C -0.303 4.303 20 S 0.168 5.832 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.207 1.207 28 H -0.197 1.197 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.227 0.773 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.306 11.125 -20.074 24.085 hybrid contribution 2.402 -1.296 -1.361 3.050 sum -4.904 9.828 -21.435 24.085 Atomic orbital electron populations 1.21732 0.95126 1.01742 1.02058 1.21171 0.96369 0.93495 1.02388 1.22491 0.91350 0.98909 1.00635 0.86452 1.23083 1.02223 1.02946 0.90267 1.22348 0.98004 0.99005 1.01984 0.85655 1.19684 0.81706 0.85538 0.79555 1.90696 1.53475 1.48663 1.48528 1.47660 1.05895 1.26981 1.53782 1.21910 0.92570 0.94140 0.97851 1.21837 1.00969 0.88344 0.90218 1.21321 0.95247 0.86384 0.95014 0.88961 1.22123 1.00715 0.97351 1.01794 1.46175 1.39686 1.28777 1.24217 1.20300 0.83892 0.82948 0.81117 1.90709 1.36993 1.72491 1.38590 1.23527 1.01105 0.98147 1.07560 1.85449 1.49750 1.29397 1.18633 1.22859 1.22339 1.13257 1.09968 0.90990 1.24994 0.96389 0.97694 0.94513 1.70020 1.36543 1.34901 1.08760 0.86172 0.80587 0.80401 0.78355 1.20280 1.20744 1.19712 0.92407 0.92669 0.92530 0.91670 0.91065 0.88474 0.87825 0.92251 0.91164 0.90470 0.89937 0.88447 0.92503 0.91675 0.91296 0.77313 0.89489 0.89361 0.92171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.87 37.15 0.37 -0.78 16 2 C -0.10 -0.80 6.22 -26.73 -0.17 -0.97 16 3 C -0.12 -1.10 5.25 -90.61 -0.48 -1.58 16 4 H 0.12 1.33 7.60 -51.93 -0.39 0.94 16 5 C -0.15 -1.14 9.88 -26.73 -0.26 -1.40 16 6 C -0.19 -1.86 5.01 -91.77 -0.46 -2.32 16 7 H 0.13 1.06 6.44 -51.93 -0.33 0.73 16 8 C 0.55 6.73 7.46 -10.99 -0.08 6.65 16 9 O -0.54 -8.54 15.84 5.55 0.09 -8.45 16 10 N -0.61 -6.05 2.73 -181.57 -0.50 -6.54 16 11 C 0.08 0.54 9.89 59.84 0.59 1.13 16 12 C 0.11 1.04 5.05 -4.04 -0.02 1.02 16 13 C 0.13 1.58 2.88 -67.93 -0.20 1.38 16 14 H 0.09 1.52 7.58 -51.92 -0.39 1.13 16 15 C -0.16 -1.80 9.48 37.16 0.35 -1.45 16 16 N -0.73 -9.65 4.52 -53.81 -0.24 -9.89 16 17 C 0.53 9.92 7.81 -10.98 -0.09 9.83 16 18 O -0.51 -11.92 15.52 5.56 0.09 -11.83 16 19 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 20 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 21 C -0.54 -15.17 9.50 30.94 0.29 -14.87 16 22 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 23 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 24 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 25 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.46 7.88 -51.93 -0.41 0.05 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 0.60 8.03 -51.93 -0.42 0.18 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.07 0.42 5.63 -51.93 -0.29 0.13 16 38 H 0.08 0.51 6.00 -51.93 -0.31 0.20 16 39 H 0.08 0.55 8.07 -51.93 -0.42 0.13 16 40 H 0.10 0.99 7.42 -51.93 -0.39 0.61 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.39 3.89 6.14 -40.82 -0.25 3.64 16 45 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 46 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 47 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 399.68 15.07 6.02 6.02 Total: -1.00 -36.54 399.68 -8.86 -45.40 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.80 Total: 2.48 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: -0.02 Total: -4.19 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.01 Total: -41.85 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.17 Total: -20.29 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.54 -8.86 -45.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756498338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.070 kcal (2) G-P(sol) polarization free energy of solvation -36.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds