Wall clock time and date at job start Tue Mar 31 2020 15:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47003 * 2 1 4 4 H 1.08992 * 115.56550 * 29.31097 * 3 2 1 5 5 C 1.53006 * 117.49724 * 243.61925 * 3 2 1 6 6 C 1.52999 * 60.00089 * 252.51316 * 5 3 2 7 7 H 1.09002 * 117.49803 * 107.49109 * 6 5 3 8 8 C 1.50700 * 117.51845 * 252.51832 * 6 5 3 9 9 O 1.21288 * 119.99910 * 68.71707 * 8 6 5 10 10 N 1.34770 * 119.99999 * 248.71846 * 8 6 5 11 11 C 1.46496 * 120.00437 * 0.02562 * 10 8 6 12 12 C 1.46511 * 119.99717 * 179.97438 * 10 8 6 13 13 C 1.52998 * 109.46816 * 90.00231 * 12 10 8 14 14 H 1.09008 * 109.46910 * 294.99396 * 13 12 10 15 15 C 1.53005 * 109.46928 * 174.99956 * 13 12 10 16 16 N 1.46495 * 109.47543 * 55.00055 * 13 12 10 17 17 C 1.34782 * 119.99954 * 205.00223 * 16 13 12 18 18 O 1.21278 * 119.99910 * 359.97438 * 17 16 13 19 19 C 1.50697 * 119.99797 * 179.97438 * 17 16 13 20 20 S 1.80998 * 109.47010 * 179.97438 * 19 17 16 21 21 C 1.76197 * 100.00036 * 180.02562 * 20 19 17 22 22 H 1.07997 * 120.00006 * 0.02562 * 21 20 19 23 23 C 1.38801 * 120.00205 * 180.02562 * 21 20 19 24 24 N 1.31632 * 119.99880 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00489 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47212 * 89.99846 * 25 23 21 27 27 H 1.48498 * 109.47560 * 210.00360 * 25 23 21 28 28 H 1.48503 * 109.46681 * 330.00000 * 25 23 21 29 29 H 1.08997 * 109.47429 * 300.00258 * 1 2 3 30 30 H 1.09002 * 109.47348 * 60.00181 * 1 2 3 31 31 H 1.08999 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47319 * 240.00010 * 2 1 3 33 33 H 1.08994 * 109.47541 * 120.00106 * 2 1 3 34 34 H 1.09003 * 117.49619 * 145.02013 * 5 3 2 35 35 H 1.08995 * 117.50015 * 0.02562 * 5 3 2 36 36 H 1.08996 * 109.46812 * 89.99835 * 11 10 8 37 37 H 1.08997 * 109.47143 * 209.99860 * 11 10 8 38 38 H 1.09000 * 109.46919 * 330.00053 * 11 10 8 39 39 H 1.08998 * 109.46674 * 209.99669 * 12 10 8 40 40 H 1.09000 * 109.47195 * 330.00141 * 12 10 8 41 41 H 1.08997 * 109.46832 * 299.99932 * 15 13 12 42 42 H 1.09006 * 109.47065 * 59.99711 * 15 13 12 43 43 H 1.09001 * 109.47174 * 179.97438 * 15 13 12 44 44 H 0.96993 * 120.00021 * 24.99776 * 16 13 12 45 45 H 1.08999 * 109.47360 * 299.99976 * 19 17 16 46 46 H 1.09006 * 109.47147 * 60.00227 * 19 17 16 47 47 H 0.97003 * 120.00291 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 0.4813 5 6 2.8439 1.9076 -1.2159 6 6 3.5501 1.6579 0.1183 7 1 4.1803 0.7719 0.1961 8 6 4.0228 2.8617 0.8918 9 8 3.2158 3.6154 1.3936 10 7 5.3423 3.1008 1.0261 11 6 6.3172 2.1909 0.4195 12 6 5.8018 4.2715 1.7777 13 6 5.9809 3.8944 3.2496 14 1 5.0125 3.6378 3.6793 15 6 6.5785 5.0796 4.0106 16 7 6.8815 2.7436 3.3529 17 6 6.8107 1.9263 4.4223 18 8 6.0018 2.1439 5.2993 19 6 7.7367 0.7422 4.5282 20 16 7.3991 -0.1521 6.0652 21 6 8.5880 -1.4459 5.9338 22 1 9.2410 -1.4941 5.0750 23 6 8.6852 -2.4033 6.9341 24 7 7.8889 -2.3449 7.9806 25 14 9.9460 -3.7746 6.7953 26 1 11.2183 -3.3432 7.4280 27 1 9.4366 -4.9872 7.4847 28 1 10.1854 -4.0836 5.3626 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.7212 2.9428 -1.5344 35 1 3.0092 1.1860 -2.0159 36 1 6.5451 2.5250 -0.5926 37 1 7.2300 2.1870 1.0151 38 1 5.9016 1.1839 0.3849 39 1 6.7540 4.6130 1.3717 40 1 5.0640 5.0695 1.6942 41 1 7.5468 5.3362 3.5809 42 1 5.9085 5.9359 3.9338 43 1 6.7057 4.8111 5.0594 44 1 7.5286 2.5697 2.6516 45 1 7.5766 0.0785 3.6786 46 1 8.7704 1.0882 4.5292 47 1 7.9571 -3.0138 8.6799 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756498338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:09 Heat of formation + Delta-G solvation = -80.865422 kcal Electronic energy + Delta-G solvation = -25904.477851 eV Core-core repulsion = 22213.154921 eV Total energy + Delta-G solvation = -3691.322930 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48911 -40.60487 -38.42577 -37.32400 -35.55604 -34.58019 -33.11960 -32.73292 -30.13991 -28.53841 -27.66185 -27.47125 -24.95096 -24.42071 -22.75826 -21.70282 -21.41598 -20.10663 -19.81203 -18.38309 -17.94468 -17.42752 -17.24377 -16.87651 -16.42300 -16.29676 -15.94370 -15.71197 -15.31427 -15.13640 -14.79352 -14.58414 -14.27653 -14.03259 -13.85416 -13.62105 -13.47690 -13.39691 -13.17423 -13.11279 -13.01586 -12.96368 -12.88861 -12.85486 -12.57457 -12.23114 -12.10422 -11.94956 -11.72720 -11.27276 -11.13976 -10.99429 -10.95393 -10.80296 -10.26379 -10.24469 -9.66255 -8.67255 -8.34069 -6.12703 1.26674 1.41680 1.43170 1.47559 1.57408 1.61575 1.92370 2.25442 2.29002 2.82050 3.00241 3.31748 3.43102 3.68367 3.73656 3.80395 3.97021 4.00299 4.12392 4.18095 4.24865 4.29561 4.34586 4.43987 4.48167 4.49083 4.55701 4.62522 4.67048 4.75243 4.77613 4.89714 4.90573 4.99299 5.02601 5.13385 5.19687 5.20465 5.25994 5.42050 5.44352 5.46104 5.52146 6.20158 6.28559 6.49207 7.07038 7.10703 7.26041 8.75158 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010743 B = 0.002985 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2605.747656 B = 9379.311310 C =10926.206644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.133 4.133 4 H 0.089 0.911 5 C -0.119 4.119 6 C -0.201 4.201 7 H 0.141 0.859 8 C 0.533 3.467 9 O -0.587 6.587 10 N -0.609 5.609 11 C 0.069 3.931 12 C 0.115 3.885 13 C 0.129 3.871 14 H 0.043 0.957 15 C -0.155 4.155 16 N -0.702 5.702 17 C 0.532 3.468 18 O -0.569 6.569 19 C -0.126 4.126 20 S -0.157 6.157 21 C -0.543 4.543 22 H 0.085 0.915 23 C 0.012 3.988 24 N -0.913 5.913 25 Si 1.000 3.000 26 H -0.268 1.268 27 H -0.280 1.280 28 H -0.255 1.255 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.133 0.867 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.413 0.587 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.778 9.950 -25.681 27.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.152 4.152 4 H 0.107 0.893 5 C -0.156 4.156 6 C -0.222 4.222 7 H 0.158 0.842 8 C 0.323 3.677 9 O -0.468 6.468 10 N -0.340 5.340 11 C -0.073 4.073 12 C -0.008 4.008 13 C 0.023 3.977 14 H 0.062 0.938 15 C -0.214 4.214 16 N -0.359 5.359 17 C 0.318 3.682 18 O -0.447 6.447 19 C -0.277 4.277 20 S 0.070 5.930 21 C -0.691 4.691 22 H 0.103 0.897 23 C -0.193 4.193 24 N -0.550 5.550 25 Si 0.821 3.179 26 H -0.194 1.194 27 H -0.205 1.205 28 H -0.179 1.179 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.112 0.888 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.145 0.855 40 H 0.108 0.892 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.053 0.947 44 H 0.252 0.748 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.561 10.653 -23.847 26.513 hybrid contribution 1.532 -1.022 -0.278 1.862 sum -3.029 9.630 -24.125 26.152 Atomic orbital electron populations 1.21734 0.94925 1.02197 1.01807 1.21152 0.96583 0.92622 1.02619 1.22457 0.91142 0.99113 1.02450 0.89291 1.23161 0.99241 1.03467 0.89745 1.22406 0.98024 0.98473 1.03249 0.84155 1.20252 0.82273 0.85814 0.79323 1.90670 1.54934 1.50484 1.50665 1.47818 1.05778 1.27336 1.53041 1.22201 0.91951 0.93737 0.99376 1.21859 1.02858 0.88112 0.87976 1.21351 0.92809 0.86205 0.97346 0.93829 1.22065 1.02645 0.97082 0.99568 1.45868 1.39451 1.27686 1.22856 1.20162 0.83073 0.83207 0.81730 1.90704 1.39197 1.73803 1.40963 1.23350 1.02544 0.98076 1.03731 1.85714 1.51122 1.31488 1.24715 1.23197 1.22196 1.13202 1.10513 0.89652 1.26160 0.98621 1.00626 0.93892 1.70199 1.38740 1.36159 1.09864 0.84935 0.77364 0.76355 0.79211 1.19371 1.20507 1.17859 0.93900 0.91739 0.91660 0.89527 0.92607 0.88783 0.84876 0.89461 0.89931 0.90259 0.85534 0.89165 0.89384 0.90175 0.94718 0.74756 0.87036 0.86983 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.87 71.98 0.71 -1.56 16 2 C -0.09 -1.48 6.22 30.59 0.19 -1.29 16 3 C -0.13 -2.54 5.25 -10.79 -0.06 -2.59 16 4 H 0.09 2.20 7.60 -2.39 -0.02 2.19 16 5 C -0.12 -1.59 9.88 30.60 0.30 -1.29 16 6 C -0.20 -3.67 5.01 -11.54 -0.06 -3.73 16 7 H 0.14 2.09 6.44 -2.39 -0.02 2.08 16 8 C 0.53 13.03 7.46 87.66 0.65 13.68 16 9 O -0.59 -19.61 15.84 -3.06 -0.05 -19.66 16 10 N -0.61 -10.85 2.73 -846.76 -2.31 -13.16 16 11 C 0.07 0.68 9.89 127.77 1.26 1.94 16 12 C 0.12 1.94 5.05 86.38 0.44 2.37 16 13 C 0.13 3.13 2.88 44.99 0.13 3.26 16 14 H 0.04 1.53 7.58 -2.38 -0.02 1.51 16 15 C -0.15 -3.31 9.48 71.98 0.68 -2.63 16 16 N -0.70 -17.28 4.52 -442.53 -2.00 -19.29 16 17 C 0.53 19.78 7.81 87.66 0.68 20.47 16 18 O -0.57 -27.58 15.52 -3.02 -0.05 -27.63 16 19 C -0.13 -4.86 6.16 71.23 0.44 -4.42 16 20 S -0.16 -8.77 20.57 -56.49 -1.16 -9.93 16 21 C -0.54 -30.65 9.50 67.95 0.65 -30.00 16 22 H 0.09 4.41 7.80 -2.91 -0.02 4.38 16 23 C 0.01 0.65 5.49 84.86 0.47 1.12 16 24 N -0.91 -56.29 13.22 21.65 0.29 -56.00 16 25 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 28 H -0.25 -10.15 7.11 99.48 0.71 -9.44 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.09 1.01 7.88 -2.38 -0.02 0.99 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.13 1.02 8.03 -2.39 -0.02 1.00 16 36 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.08 0.59 5.63 -2.39 -0.01 0.58 16 38 H 0.08 0.78 6.00 -2.39 -0.01 0.77 16 39 H 0.13 1.07 8.07 -2.39 -0.02 1.05 16 40 H 0.09 1.74 7.42 -2.39 -0.02 1.72 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.41 6.64 6.14 -92.71 -0.57 6.07 16 45 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 46 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 47 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -86.32 399.68 3.62 -82.70 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.39 Total: 22.55 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 6.49 Total: -4.67 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -4.03 Total: -88.44 kcal Atomic # 8 Polarization: -47.19 SS G_CDS: -0.10 Total: -47.29 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -8.77 SS G_CDS: -1.16 Total: -9.93 kcal Total: -86.32 3.62 -82.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756498338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.831 kcal (2) G-P(sol) polarization free energy of solvation -86.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds