Wall clock time and date at job start Tue Mar 31 2020 15:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47276 * 2 1 4 4 C 1.50706 * 109.47213 * 119.99762 * 2 1 3 5 5 O 1.21283 * 120.00096 * 240.00599 * 4 2 1 6 6 N 1.34775 * 119.99920 * 59.99779 * 4 2 1 7 7 C 1.46504 * 120.00073 * 180.02562 * 6 4 2 8 8 H 1.08994 * 110.01691 * 326.39375 * 7 6 4 9 9 C 1.53877 * 110.07285 * 87.81240 * 7 6 4 10 10 C 1.54460 * 106.68486 * 119.46243 * 9 7 6 11 11 C 1.54889 * 104.10067 * 23.34565 * 10 9 7 12 12 H 1.08999 * 110.75801 * 80.70253 * 11 10 9 13 13 C 1.53004 * 110.75862 * 203.89189 * 11 10 9 14 14 N 1.46500 * 109.46809 * 291.06423 * 13 11 10 15 15 C 1.34775 * 119.99893 * 179.97438 * 14 13 11 16 16 O 1.21284 * 120.00295 * 0.02562 * 15 14 13 17 17 C 1.50708 * 119.99957 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47052 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99771 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00311 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.47016 * 299.99635 * 23 21 19 26 26 H 1.48495 * 109.47483 * 59.99992 * 23 21 19 27 27 C 1.54260 * 110.03100 * 205.00164 * 7 6 4 28 28 H 1.09002 * 109.46628 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47449 * 300.00551 * 1 2 3 30 30 H 1.09001 * 109.46840 * 60.00268 * 1 2 3 31 31 H 1.08996 * 109.47449 * 239.99449 * 2 1 3 32 32 H 1.09003 * 109.47300 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46968 * 299.99654 * 3 2 1 34 34 H 1.09004 * 109.47036 * 59.99601 * 3 2 1 35 35 H 0.97003 * 120.00034 * 0.02562 * 6 4 2 36 36 H 1.09000 * 110.02922 * 238.59574 * 9 7 6 37 37 H 1.09003 * 110.02750 * 359.97180 * 9 7 6 38 38 H 1.09002 * 110.40977 * 264.75586 * 10 9 7 39 39 H 1.09000 * 110.65730 * 142.04966 * 10 9 7 40 40 H 1.08993 * 109.47192 * 171.06447 * 13 11 10 41 41 H 1.09003 * 109.46556 * 51.05907 * 13 11 10 42 42 H 0.97002 * 120.00447 * 359.97438 * 14 13 11 43 43 H 1.09005 * 109.46512 * 60.00633 * 17 15 14 44 44 H 1.08991 * 109.47135 * 300.00153 * 17 15 14 45 45 H 0.97001 * 119.99662 * 359.97438 * 22 21 19 46 46 H 1.09007 * 110.48765 * 98.38148 * 27 7 6 47 47 H 1.09005 * 110.60474 * 335.79158 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -0.1209 2.0289 6 7 1.7067 -2.0007 1.4439 7 6 2.1946 -2.6911 2.6404 8 1 3.1837 -2.3198 2.9081 9 6 1.2170 -2.4771 3.8092 10 6 0.7154 -3.8761 4.2297 11 6 1.8245 -4.8385 3.7370 12 1 2.6601 -4.8554 4.4366 13 6 1.2663 -6.2477 3.5281 14 7 0.9264 -6.8355 4.8262 15 6 0.4136 -8.0804 4.8887 16 8 0.2341 -8.7141 3.8703 17 6 0.0644 -8.6854 6.2241 18 16 -0.5960 -10.3523 5.9771 19 6 -0.9110 -10.8076 7.6498 20 1 -0.6909 -10.1150 8.4485 21 6 -1.4421 -12.0566 7.9408 22 7 -1.7099 -12.9010 6.9673 23 14 -1.7766 -12.5390 9.7142 24 1 -2.3385 -13.9129 9.7558 25 1 -0.5082 -12.4998 10.4856 26 1 -2.7485 -11.5880 10.3110 27 6 2.2519 -4.2116 2.3866 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.1493 -2.4722 0.8052 36 1 1.7317 -2.0017 4.6442 37 1 0.3792 -1.8588 3.4867 38 1 -0.2318 -4.1033 3.7405 39 1 0.6107 -3.9375 5.3129 40 1 2.0160 -6.8659 3.0345 41 1 0.3719 -6.1958 2.9073 42 1 1.0703 -6.3289 5.6408 43 1 -0.6849 -8.0668 6.7183 44 1 0.9591 -8.7376 6.8444 45 1 -1.5365 -12.6503 6.0464 46 1 3.2657 -4.5174 2.1280 47 1 1.5558 -4.4953 1.5971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756635786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:17 Heat of formation + Delta-G solvation = -111.634539 kcal Electronic energy + Delta-G solvation = -24820.907525 eV Core-core repulsion = 21128.250347 eV Total energy + Delta-G solvation = -3692.657179 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60911 -39.46481 -38.34525 -35.09214 -34.94203 -33.42734 -32.53720 -30.50111 -29.14647 -28.30858 -27.51276 -25.02061 -24.54025 -23.71171 -21.08116 -20.82354 -20.23985 -19.90101 -18.34004 -17.64959 -17.02674 -16.52208 -16.11660 -15.85946 -15.70223 -15.20910 -14.70815 -14.37493 -14.19301 -14.00867 -13.84401 -13.70593 -13.32131 -13.28083 -12.91931 -12.81692 -12.59668 -12.41208 -12.21771 -12.17500 -11.94159 -11.86874 -11.66725 -11.57113 -11.50826 -11.21236 -11.07825 -10.92957 -10.92369 -10.18125 -10.09995 -9.59732 -9.52717 -9.46209 -9.04127 -8.95759 -8.23680 -6.68373 -6.63252 -4.01203 2.24669 2.72043 2.93064 2.98464 3.34376 3.37233 3.54691 3.59644 4.00966 4.15983 4.20199 4.24503 4.36789 4.43420 4.46054 4.80844 4.91520 4.93229 4.97874 5.04479 5.09121 5.09830 5.12283 5.18401 5.20552 5.21509 5.34135 5.38392 5.42778 5.45150 5.59303 5.62040 5.67079 5.68470 5.73444 5.76664 5.79083 5.83185 5.99469 6.00572 6.16643 6.52664 7.07532 7.60690 7.83314 7.90766 8.48949 8.50049 9.26009 10.80663 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037739 B = 0.001649 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.752312 B =16980.513523 C =17144.037132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.133 4.133 4 C 0.516 3.484 5 O -0.539 6.539 6 N -0.725 5.725 7 C 0.140 3.860 8 H 0.092 0.908 9 C -0.133 4.133 10 C -0.120 4.120 11 C -0.103 4.103 12 H 0.087 0.913 13 C 0.130 3.870 14 N -0.736 5.736 15 C 0.530 3.470 16 O -0.519 6.519 17 C -0.131 4.131 18 S -0.116 6.116 19 C -0.608 4.608 20 H 0.066 0.934 21 C 0.036 3.964 22 N -0.884 5.884 23 Si 1.084 2.916 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.285 1.285 27 C -0.121 4.121 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.400 0.600 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.399 0.601 43 H 0.092 0.908 44 H 0.092 0.908 45 H 0.278 0.722 46 H 0.078 0.922 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.159 27.657 -12.748 31.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 C -0.191 4.191 4 C 0.302 3.698 5 O -0.416 6.416 6 N -0.377 5.377 7 C 0.036 3.964 8 H 0.110 0.890 9 C -0.172 4.172 10 C -0.157 4.157 11 C -0.122 4.122 12 H 0.106 0.894 13 C 0.006 3.994 14 N -0.391 5.391 15 C 0.316 3.684 16 O -0.394 6.394 17 C -0.282 4.282 18 S 0.110 5.890 19 C -0.756 4.756 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.518 5.518 23 Si 0.910 3.090 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.211 1.211 27 C -0.159 4.159 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.232 0.768 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.090 0.910 46 H 0.096 0.904 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.799 25.795 -12.951 29.653 hybrid contribution 0.606 2.053 0.491 2.196 sum 7.405 27.847 -12.460 31.394 Atomic orbital electron populations 1.21798 0.92786 1.02568 1.03100 1.21327 0.97666 0.98173 0.96598 1.21615 1.01793 0.93499 1.02169 1.20760 0.79737 0.81738 0.87571 1.90705 1.37760 1.65905 1.47194 1.46235 1.53813 1.12230 1.25391 1.21630 0.98539 0.91568 0.84676 0.88976 1.22599 0.99141 0.97438 0.98015 1.22495 0.98240 0.93650 1.01361 1.22338 0.98729 0.93744 0.97410 0.89447 1.21260 1.00123 0.92137 0.85861 1.45948 1.67183 1.16717 1.09232 1.20282 0.76252 0.80672 0.91201 1.90702 1.51729 1.60551 1.36396 1.23319 1.04590 1.03537 0.96799 1.84812 1.81967 1.08863 1.13365 1.23706 1.53825 1.06913 0.91191 0.91614 1.26056 0.93045 0.91641 1.06757 1.70803 1.42678 1.36819 1.01475 0.83330 0.76637 0.76546 0.72488 1.20265 1.21138 1.21141 1.22598 1.02621 0.93144 0.97563 0.92093 0.91995 0.91274 0.88519 0.91963 0.92003 0.91918 0.76504 0.91099 0.91281 0.91053 0.91120 0.91533 0.91529 0.76766 0.88983 0.88972 0.91002 0.90377 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 9.09 37.16 0.34 -0.23 16 2 C -0.12 -0.61 3.26 -91.77 -0.30 -0.91 16 3 C -0.13 -0.78 8.48 37.16 0.32 -0.47 16 4 C 0.52 4.17 7.15 -10.98 -0.08 4.09 16 5 O -0.54 -6.58 15.64 5.55 0.09 -6.49 16 6 N -0.72 -4.46 4.88 -52.72 -0.26 -4.72 16 7 C 0.14 0.98 3.24 -66.81 -0.22 0.76 16 8 H 0.09 0.79 7.56 -51.93 -0.39 0.40 16 9 C -0.13 -0.96 6.60 -25.51 -0.17 -1.13 16 10 C -0.12 -0.84 6.11 -24.97 -0.15 -0.99 16 11 C -0.10 -0.73 2.92 -88.62 -0.26 -0.99 16 12 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 13 C 0.13 1.35 5.11 -4.04 -0.02 1.33 16 14 N -0.74 -9.19 5.43 -60.29 -0.33 -9.52 16 15 C 0.53 9.62 7.85 -10.98 -0.09 9.54 16 16 O -0.52 -11.56 15.86 5.55 0.09 -11.47 16 17 C -0.13 -2.62 6.16 36.01 0.22 -2.40 16 18 S -0.12 -3.13 19.60 -107.50 -2.11 -5.23 16 19 C -0.61 -17.53 9.50 30.94 0.29 -17.23 16 20 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 21 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 22 N -0.88 -27.47 13.67 55.49 0.76 -26.71 16 23 Si 1.08 24.86 29.92 -169.99 -5.09 19.77 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 27 C -0.12 -0.73 5.98 -25.07 -0.15 -0.88 16 28 H 0.06 0.19 7.57 -51.93 -0.39 -0.21 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 35 H 0.40 1.55 7.78 -40.82 -0.32 1.23 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.53 7.92 -51.93 -0.41 0.12 16 38 H 0.07 0.54 7.98 -51.93 -0.41 0.13 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.74 8.05 -51.93 -0.42 0.33 16 42 H 0.40 3.87 8.41 -40.82 -0.34 3.52 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 44 H 0.09 1.71 8.14 -51.92 -0.42 1.29 16 45 H 0.28 8.81 7.12 -40.82 -0.29 8.52 16 46 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.42 7.65 -51.93 -0.40 0.02 16 LS Contribution 396.84 15.07 5.98 5.98 Total: -1.00 -36.96 396.84 -9.30 -46.26 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -8.07 Total: 0.71 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -0.36 Total: -8.57 kcal Atomic # 7 Polarization: -41.12 SS G_CDS: 0.17 Total: -40.95 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: 0.17 Total: -17.96 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.77 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.11 Total: -5.23 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.96 -9.30 -46.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756635786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.376 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds