Wall clock time and date at job start Tue Mar 31 2020 15:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47276 * 2 1 4 4 C 1.50706 * 109.47213 * 119.99762 * 2 1 3 5 5 O 1.21283 * 120.00096 * 240.00599 * 4 2 1 6 6 N 1.34775 * 119.99920 * 59.99779 * 4 2 1 7 7 C 1.46504 * 120.00073 * 180.02562 * 6 4 2 8 8 H 1.08994 * 110.01691 * 326.39375 * 7 6 4 9 9 C 1.53877 * 110.07285 * 87.81240 * 7 6 4 10 10 C 1.54460 * 106.68486 * 119.46243 * 9 7 6 11 11 C 1.54889 * 104.10067 * 23.34565 * 10 9 7 12 12 H 1.08999 * 110.75801 * 80.70253 * 11 10 9 13 13 C 1.53004 * 110.75862 * 203.89189 * 11 10 9 14 14 N 1.46500 * 109.46809 * 291.06423 * 13 11 10 15 15 C 1.34775 * 119.99893 * 179.97438 * 14 13 11 16 16 O 1.21284 * 120.00295 * 0.02562 * 15 14 13 17 17 C 1.50708 * 119.99957 * 179.97438 * 15 14 13 18 18 S 1.80998 * 109.47052 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99771 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00311 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.47016 * 299.99635 * 23 21 19 26 26 H 1.48495 * 109.47483 * 59.99992 * 23 21 19 27 27 C 1.54260 * 110.03100 * 205.00164 * 7 6 4 28 28 H 1.09002 * 109.46628 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47449 * 300.00551 * 1 2 3 30 30 H 1.09001 * 109.46840 * 60.00268 * 1 2 3 31 31 H 1.08996 * 109.47449 * 239.99449 * 2 1 3 32 32 H 1.09003 * 109.47300 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46968 * 299.99654 * 3 2 1 34 34 H 1.09004 * 109.47036 * 59.99601 * 3 2 1 35 35 H 0.97003 * 120.00034 * 0.02562 * 6 4 2 36 36 H 1.09000 * 110.02922 * 238.59574 * 9 7 6 37 37 H 1.09003 * 110.02750 * 359.97180 * 9 7 6 38 38 H 1.09002 * 110.40977 * 264.75586 * 10 9 7 39 39 H 1.09000 * 110.65730 * 142.04966 * 10 9 7 40 40 H 1.08993 * 109.47192 * 171.06447 * 13 11 10 41 41 H 1.09003 * 109.46556 * 51.05907 * 13 11 10 42 42 H 0.97002 * 120.00447 * 359.97438 * 14 13 11 43 43 H 1.09005 * 109.46512 * 60.00633 * 17 15 14 44 44 H 1.08991 * 109.47135 * 300.00153 * 17 15 14 45 45 H 0.97001 * 119.99662 * 359.97438 * 22 21 19 46 46 H 1.09007 * 110.48765 * 98.38148 * 27 7 6 47 47 H 1.09005 * 110.60474 * 335.79158 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.7296 -0.1209 2.0289 6 7 1.7067 -2.0007 1.4439 7 6 2.1946 -2.6911 2.6404 8 1 3.1837 -2.3198 2.9081 9 6 1.2170 -2.4771 3.8092 10 6 0.7154 -3.8761 4.2297 11 6 1.8245 -4.8385 3.7370 12 1 2.6601 -4.8554 4.4366 13 6 1.2663 -6.2477 3.5281 14 7 0.9264 -6.8355 4.8262 15 6 0.4136 -8.0804 4.8887 16 8 0.2341 -8.7141 3.8703 17 6 0.0644 -8.6854 6.2241 18 16 -0.5960 -10.3523 5.9771 19 6 -0.9110 -10.8076 7.6498 20 1 -0.6909 -10.1150 8.4485 21 6 -1.4421 -12.0566 7.9408 22 7 -1.7099 -12.9010 6.9673 23 14 -1.7766 -12.5390 9.7142 24 1 -2.3385 -13.9129 9.7558 25 1 -0.5082 -12.4998 10.4856 26 1 -2.7485 -11.5880 10.3110 27 6 2.2519 -4.2116 2.3866 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.1493 -2.4722 0.8052 36 1 1.7317 -2.0017 4.6442 37 1 0.3792 -1.8588 3.4867 38 1 -0.2318 -4.1033 3.7405 39 1 0.6107 -3.9375 5.3129 40 1 2.0160 -6.8659 3.0345 41 1 0.3719 -6.1958 2.9073 42 1 1.0703 -6.3289 5.6408 43 1 -0.6849 -8.0668 6.7183 44 1 0.9591 -8.7376 6.8444 45 1 -1.5365 -12.6503 6.0464 46 1 3.2657 -4.5174 2.1280 47 1 1.5558 -4.4953 1.5971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756635786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:16 Heat of formation + Delta-G solvation = -137.657693 kcal Electronic energy + Delta-G solvation = -24822.035974 eV Core-core repulsion = 21128.250347 eV Total energy + Delta-G solvation = -3693.785627 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.25916 -40.69229 -39.15946 -36.07626 -35.46363 -34.74295 -34.27337 -31.69644 -30.02665 -29.10289 -27.92096 -27.09104 -25.49081 -24.27869 -22.01668 -21.54820 -21.12582 -20.61700 -20.30504 -18.20267 -18.03051 -17.75324 -17.04720 -16.92186 -16.44420 -16.23078 -16.12109 -15.68165 -15.31124 -15.01032 -14.79551 -14.69601 -14.47413 -14.27514 -13.89676 -13.88916 -13.74670 -13.34332 -13.19051 -13.06721 -12.77915 -12.73433 -12.72840 -12.14604 -12.07382 -11.98455 -11.94979 -11.88715 -11.73767 -11.54370 -11.53180 -11.09136 -11.04004 -10.73667 -10.32141 -10.15719 -10.06356 -8.91921 -8.86210 -6.27074 1.21540 1.52994 1.53420 1.61260 1.63538 1.81516 2.13537 2.29700 2.36600 3.02917 3.14514 3.40941 3.54047 3.69623 3.84563 3.89582 3.99194 4.05495 4.16982 4.21406 4.31312 4.38611 4.39369 4.46729 4.48855 4.54021 4.56822 4.74363 4.78684 4.84862 4.88783 4.91647 4.94932 5.05683 5.09158 5.14519 5.22122 5.30600 5.31162 5.34321 5.44663 5.60417 5.64753 6.15578 6.44751 6.55957 7.06765 7.17633 7.26939 8.51578 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037739 B = 0.001649 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.752312 B =16980.513523 C =17144.037132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.133 4.133 4 C 0.510 3.490 5 O -0.587 6.587 6 N -0.714 5.714 7 C 0.142 3.858 8 H 0.075 0.925 9 C -0.128 4.128 10 C -0.115 4.115 11 C -0.092 4.092 12 H 0.097 0.903 13 C 0.130 3.870 14 N -0.709 5.709 15 C 0.532 3.468 16 O -0.567 6.567 17 C -0.111 4.111 18 S -0.196 6.196 19 C -0.615 4.615 20 H 0.075 0.925 21 C -0.018 4.018 22 N -0.913 5.913 23 Si 1.136 2.864 24 H -0.280 1.280 25 H -0.264 1.264 26 H -0.263 1.263 27 C -0.113 4.113 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.119 0.881 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.414 0.586 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.416 0.584 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.260 0.740 46 H 0.084 0.916 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.258 29.107 -12.275 32.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.133 4.133 3 C -0.191 4.191 4 C 0.298 3.702 5 O -0.467 6.467 6 N -0.366 5.366 7 C 0.037 3.963 8 H 0.093 0.907 9 C -0.167 4.167 10 C -0.153 4.153 11 C -0.111 4.111 12 H 0.115 0.885 13 C 0.007 3.993 14 N -0.363 5.363 15 C 0.318 3.682 16 O -0.446 6.446 17 C -0.262 4.262 18 S 0.031 5.969 19 C -0.763 4.763 20 H 0.093 0.907 21 C -0.222 4.222 22 N -0.548 5.548 23 Si 0.954 3.046 24 H -0.206 1.206 25 H -0.188 1.188 26 H -0.188 1.188 27 C -0.151 4.151 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.102 0.898 31 H 0.137 0.863 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.251 0.749 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.253 0.747 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 6.907 27.299 -12.492 30.806 hybrid contribution 0.635 1.746 0.282 1.879 sum 7.542 29.045 -12.209 32.397 Atomic orbital electron populations 1.21797 0.91504 1.03417 1.03204 1.21370 0.98570 0.97462 0.95878 1.21618 1.00900 0.94224 1.02348 1.21328 0.78946 0.82031 0.87898 1.90684 1.40037 1.67001 1.48986 1.46160 1.53310 1.11780 1.25302 1.21539 0.97670 0.92133 0.84976 0.90718 1.22529 0.98856 0.97470 0.97869 1.22462 0.97941 0.93208 1.01694 1.22247 0.98875 0.91561 0.98403 0.88466 1.21408 0.99916 0.93576 0.84408 1.45718 1.64680 1.14698 1.11167 1.19980 0.76549 0.82020 0.89664 1.90693 1.54221 1.62193 1.37448 1.23241 1.05415 0.98972 0.98620 1.85041 1.83085 1.14934 1.13860 1.24048 1.53177 1.07277 0.91780 0.90668 1.27819 0.92142 0.91832 1.10374 1.70922 1.44899 1.37807 1.01184 0.82719 0.77892 0.76470 0.67534 1.20555 1.18836 1.18801 1.22549 1.03353 0.92036 0.97203 0.90886 0.93316 0.89752 0.86271 0.93380 0.89858 0.93647 0.74897 0.91786 0.91775 0.91302 0.90569 0.92131 0.91964 0.74704 0.87038 0.87090 0.92864 0.89706 0.89306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.09 71.98 0.65 -0.18 16 2 C -0.11 -1.01 3.26 -11.54 -0.04 -1.05 16 3 C -0.13 -1.49 8.48 71.98 0.61 -0.88 16 4 C 0.51 7.91 7.15 87.66 0.63 8.54 16 5 O -0.59 -14.61 15.64 -3.04 -0.05 -14.66 16 6 N -0.71 -7.74 4.88 -439.10 -2.14 -9.88 16 7 C 0.14 1.78 3.24 45.71 0.15 1.93 16 8 H 0.07 1.25 7.56 -2.39 -0.02 1.23 16 9 C -0.13 -1.68 6.60 31.39 0.21 -1.47 16 10 C -0.12 -1.35 6.11 31.74 0.19 -1.16 16 11 C -0.09 -1.07 2.92 -9.50 -0.03 -1.10 16 12 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 13 C 0.13 2.42 5.11 86.38 0.44 2.86 16 14 N -0.71 -16.01 5.43 -463.05 -2.52 -18.53 16 15 C 0.53 18.67 7.85 87.66 0.69 19.36 16 16 O -0.57 -25.29 15.86 -3.04 -0.05 -25.34 16 17 C -0.11 -4.28 6.16 71.24 0.44 -3.84 16 18 S -0.20 -10.69 19.60 -56.49 -1.11 -11.80 16 19 C -0.62 -35.29 9.50 67.95 0.65 -34.64 16 20 H 0.08 4.03 7.80 -2.92 -0.02 4.01 16 21 C -0.02 -1.07 5.49 84.86 0.47 -0.60 16 22 N -0.91 -57.83 13.67 21.65 0.30 -57.53 16 23 Si 1.14 48.94 29.92 68.60 2.05 50.99 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 26 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 27 C -0.11 -1.10 5.98 31.67 0.19 -0.91 16 28 H 0.07 0.26 7.57 -2.39 -0.02 0.24 16 29 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.67 8.10 -2.39 -0.02 0.65 16 33 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.04 0.66 8.10 -2.39 -0.02 0.64 16 35 H 0.41 2.24 7.78 -92.71 -0.72 1.52 16 36 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.91 7.92 -2.39 -0.02 0.90 16 38 H 0.07 0.88 7.98 -2.39 -0.02 0.86 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.27 8.05 -2.39 -0.02 1.25 16 42 H 0.42 6.68 8.41 -92.71 -0.78 5.90 16 43 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 44 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 45 H 0.26 17.15 7.12 -92.71 -0.66 16.49 16 46 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 47 H 0.09 0.71 7.65 -2.38 -0.02 0.69 16 Total: -1.00 -83.33 396.84 1.30 -82.02 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -0.43 Total: 17.87 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.24 Total: -13.14 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -4.36 Total: -85.95 kcal Atomic # 8 Polarization: -39.90 SS G_CDS: -0.10 Total: -40.00 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.05 Total: 50.99 kcal Atomic # 16 Polarization: -10.69 SS G_CDS: -1.11 Total: -11.80 kcal Total: -83.33 1.30 -82.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756635786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.636 kcal (2) G-P(sol) polarization free energy of solvation -83.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds