Wall clock time and date at job start Tue Mar 31 2020 15:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 O 1.21277 * 120.00304 * 239.99974 * 4 2 1 6 6 N 1.34778 * 119.99637 * 60.00346 * 4 2 1 7 7 C 1.46505 * 119.99943 * 179.97438 * 6 4 2 8 8 H 1.09000 * 110.01387 * 325.06535 * 7 6 4 9 9 C 1.54260 * 110.03092 * 86.45020 * 7 6 4 10 10 C 1.54892 * 104.19433 * 142.89589 * 9 7 6 11 11 C 1.54892 * 102.74858 * 322.05774 * 10 9 7 12 12 H 1.09000 * 110.48613 * 279.12939 * 11 10 9 13 13 C 1.53004 * 110.48746 * 156.61938 * 11 10 9 14 14 N 1.46495 * 109.47145 * 66.45341 * 13 11 10 15 15 C 1.34776 * 120.00268 * 180.02562 * 14 13 11 16 16 O 1.21283 * 119.99483 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00161 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47141 * 179.97438 * 17 15 14 19 19 C 1.76206 * 100.00219 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99867 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99806 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99493 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00324 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46848 * 90.00010 * 23 21 19 25 25 H 1.48495 * 109.47117 * 209.99897 * 23 21 19 26 26 H 1.48498 * 109.47356 * 330.00286 * 23 21 19 27 27 C 1.53878 * 110.03101 * 203.62239 * 7 6 4 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 0.97000 * 120.00145 * 0.02562 * 6 4 2 36 36 H 1.08998 * 110.49218 * 261.57619 * 9 7 6 37 37 H 1.09004 * 110.48892 * 24.22194 * 9 7 6 38 38 H 1.08994 * 110.75748 * 80.37062 * 10 9 7 39 39 H 1.08998 * 110.76231 * 203.55940 * 10 9 7 40 40 H 1.08995 * 109.47200 * 186.45938 * 13 11 10 41 41 H 1.09007 * 109.46631 * 306.45771 * 13 11 10 42 42 H 0.97005 * 120.00040 * 0.02562 * 14 13 11 43 43 H 1.08995 * 109.47443 * 299.99879 * 17 15 14 44 44 H 1.09003 * 109.47676 * 60.00071 * 17 15 14 45 45 H 0.97008 * 120.00242 * 180.02562 * 22 21 19 46 46 H 1.08994 * 110.03198 * 359.97438 * 27 7 6 47 47 H 1.09000 * 110.03210 * 121.43525 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -0.1210 2.0287 6 7 1.7068 -2.0008 1.4436 7 6 2.1956 -2.6916 2.6395 8 1 3.1948 -2.3372 2.8929 9 6 1.2335 -2.4485 3.8205 10 6 1.2221 -3.7958 4.5847 11 6 1.2713 -4.8383 3.4402 12 1 0.2783 -4.9858 3.0156 13 6 1.8374 -6.1656 3.9489 14 7 0.9067 -6.7554 4.9143 15 6 1.1990 -7.9343 5.4984 16 8 2.2323 -8.5071 5.2244 17 6 0.2413 -8.5413 6.4911 18 16 0.9110 -10.1114 7.0930 19 6 -0.3727 -10.5864 8.2026 20 1 -1.2375 -9.9524 8.3310 21 6 -0.2720 -11.7749 8.9124 22 7 -1.2308 -12.1295 9.7416 23 14 1.2241 -12.8713 8.6908 24 1 2.2699 -12.4857 9.6721 25 1 0.8367 -14.2878 8.9112 26 1 1.7550 -12.7119 7.3132 27 6 2.2198 -4.2111 2.3976 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.1495 -2.4723 0.8049 36 1 1.6090 -1.6501 4.4605 37 1 0.2347 -2.2084 3.4558 38 1 2.0994 -3.8839 5.2254 39 1 0.3074 -3.9014 5.1680 40 1 1.9720 -6.8485 3.1101 41 1 2.7986 -5.9894 4.4318 42 1 0.0801 -6.2975 5.1331 43 1 0.1060 -7.8584 7.3297 44 1 -0.7195 -8.7181 6.0078 45 1 -1.1603 -12.9599 10.2380 46 1 1.8674 -4.4344 1.3907 47 1 3.2308 -4.5948 2.5340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756635787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:22 Heat of formation + Delta-G solvation = -105.821148 kcal Electronic energy + Delta-G solvation = -24824.792021 eV Core-core repulsion = 21132.386930 eV Total energy + Delta-G solvation = -3692.405091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.61285 -39.48128 -38.35628 -35.09706 -34.95004 -33.42390 -32.44369 -30.51883 -29.15268 -28.29170 -27.51896 -25.64045 -24.66355 -23.70649 -21.04273 -20.64453 -20.47492 -20.04543 -17.88824 -17.67551 -16.86333 -16.41462 -16.19884 -15.76447 -15.53407 -15.03434 -14.98195 -14.62756 -14.29602 -14.16855 -13.91678 -13.74499 -13.32675 -13.24587 -12.91989 -12.83121 -12.80286 -12.57134 -12.27406 -12.02654 -11.86543 -11.66561 -11.58435 -11.57303 -11.27116 -11.18167 -11.11120 -11.01613 -10.98303 -10.60190 -10.09747 -9.86145 -9.53339 -9.45354 -9.02436 -8.96105 -8.50578 -6.92333 -6.29456 -4.01224 2.24946 2.71862 2.79057 2.97581 3.30565 3.34179 3.50233 3.64977 4.02654 4.18859 4.21665 4.32832 4.33313 4.37637 4.44160 4.73400 4.82448 4.95615 4.97904 5.00877 5.06629 5.08476 5.09702 5.10867 5.17338 5.20534 5.32503 5.33147 5.34421 5.43260 5.58750 5.61041 5.67237 5.70874 5.74694 5.77001 5.80090 5.84161 6.00036 6.01615 6.15734 6.52460 7.07335 7.60362 7.83629 7.93555 8.40988 8.48912 9.16790 10.79751 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.043772 B = 0.001675 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.519468 B =16714.087161 C =16926.589626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C -0.133 4.133 4 C 0.515 3.485 5 O -0.538 6.538 6 N -0.725 5.725 7 C 0.140 3.860 8 H 0.092 0.908 9 C -0.132 4.132 10 C -0.120 4.120 11 C -0.103 4.103 12 H 0.084 0.916 13 C 0.128 3.872 14 N -0.736 5.736 15 C 0.530 3.470 16 O -0.520 6.520 17 C -0.124 4.124 18 S -0.142 6.142 19 C -0.522 4.522 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.857 3.143 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C -0.122 4.122 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.399 0.601 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.271 0.729 46 H 0.074 0.926 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.240 25.372 -21.637 33.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.191 4.191 4 C 0.301 3.699 5 O -0.414 6.414 6 N -0.377 5.377 7 C 0.035 3.965 8 H 0.110 0.890 9 C -0.171 4.171 10 C -0.158 4.158 11 C -0.122 4.122 12 H 0.102 0.898 13 C 0.004 3.996 14 N -0.390 5.390 15 C 0.316 3.684 16 O -0.395 6.395 17 C -0.275 4.275 18 S 0.084 5.916 19 C -0.670 4.670 20 H 0.106 0.894 21 C -0.113 4.113 22 N -0.517 5.517 23 Si 0.682 3.318 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.161 4.161 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.233 0.767 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.423 24.707 -21.389 32.977 hybrid contribution -1.473 0.000 0.243 1.493 sum 2.950 24.707 -21.145 32.654 Atomic orbital electron populations 1.21795 0.92817 1.02495 1.03097 1.21327 0.97638 0.98194 0.96609 1.21614 1.01824 0.93492 1.02169 1.20751 0.79777 0.81762 0.87564 1.90709 1.37675 1.65885 1.47159 1.46262 1.53843 1.12253 1.25376 1.21654 0.98853 0.91398 0.84555 0.89013 1.22764 0.99643 0.97982 0.96717 1.22586 1.02889 0.93342 0.97014 1.22224 0.99726 0.94124 0.96093 0.89795 1.21332 0.93068 0.92910 0.92251 1.45939 1.24491 1.23064 1.45527 1.20276 0.87019 0.80145 0.80994 1.90701 1.25943 1.60793 1.62073 1.23277 1.01431 1.02577 1.00206 1.84792 1.32136 1.19345 1.55330 1.22322 1.06712 1.10666 1.27254 0.89398 1.24710 0.96371 0.96639 0.93556 1.69939 1.32452 1.23697 1.25599 0.86733 0.83113 0.80310 0.81682 1.19202 1.19936 1.15936 1.22399 1.01015 0.93377 0.99296 0.91974 0.91306 0.92151 0.88558 0.91894 0.91950 0.92024 0.76589 0.91002 0.91185 0.90664 0.90937 0.91588 0.91405 0.76718 0.88521 0.88501 0.91944 0.90710 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.50 9.09 37.16 0.34 -0.17 16 2 C -0.12 -0.58 3.26 -91.77 -0.30 -0.88 16 3 C -0.13 -0.76 8.48 37.16 0.32 -0.45 16 4 C 0.52 4.06 7.14 -10.99 -0.08 3.98 16 5 O -0.54 -6.54 15.66 5.56 0.09 -6.46 16 6 N -0.73 -4.20 4.94 -52.72 -0.26 -4.46 16 7 C 0.14 0.96 3.23 -66.81 -0.22 0.74 16 8 H 0.09 0.81 7.61 -51.93 -0.39 0.42 16 9 C -0.13 -0.93 6.52 -25.07 -0.16 -1.10 16 10 C -0.12 -0.83 6.01 -24.74 -0.15 -0.98 16 11 C -0.10 -0.67 2.93 -88.95 -0.26 -0.94 16 12 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 13 C 0.13 1.28 4.96 -4.04 -0.02 1.26 16 14 N -0.74 -8.74 5.40 -60.30 -0.33 -9.07 16 15 C 0.53 9.18 7.85 -10.99 -0.09 9.09 16 16 O -0.52 -11.11 15.86 5.56 0.09 -11.03 16 17 C -0.12 -2.36 6.16 36.00 0.22 -2.14 16 18 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 19 C -0.52 -15.01 10.04 30.94 0.31 -14.70 16 20 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 21 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 22 N -0.88 -26.51 13.97 55.49 0.78 -25.73 16 23 Si 0.86 21.77 27.74 -169.99 -4.71 17.05 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 27 C -0.12 -0.70 6.14 -25.61 -0.16 -0.86 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.15 7.57 -51.93 -0.39 -0.25 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 34 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.40 1.30 7.71 -40.82 -0.31 0.98 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.47 8.05 -51.93 -0.42 0.05 16 38 H 0.07 0.59 8.02 -51.93 -0.42 0.18 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.75 8.10 -51.92 -0.42 0.33 16 42 H 0.40 3.64 8.33 -40.82 -0.34 3.30 16 43 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 44 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.07 0.33 7.60 -51.93 -0.39 -0.06 16 47 H 0.08 0.51 7.84 -51.93 -0.41 0.10 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -36.08 395.15 -8.87 -44.95 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.15 Total: -1.21 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -0.34 Total: -4.42 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.19 Total: -39.26 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.18 Total: -17.48 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.05 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.08 -8.87 -44.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756635787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.868 kcal (2) G-P(sol) polarization free energy of solvation -36.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds