Wall clock time and date at job start Tue Mar 31 2020 15:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 O 1.21277 * 120.00304 * 239.99974 * 4 2 1 6 6 N 1.34778 * 119.99637 * 60.00346 * 4 2 1 7 7 C 1.46505 * 119.99943 * 179.97438 * 6 4 2 8 8 H 1.09000 * 110.01387 * 325.06535 * 7 6 4 9 9 C 1.54260 * 110.03092 * 86.45020 * 7 6 4 10 10 C 1.54892 * 104.19433 * 142.89589 * 9 7 6 11 11 C 1.54892 * 102.74858 * 322.05774 * 10 9 7 12 12 H 1.09000 * 110.48613 * 279.12939 * 11 10 9 13 13 C 1.53004 * 110.48746 * 156.61938 * 11 10 9 14 14 N 1.46495 * 109.47145 * 66.45341 * 13 11 10 15 15 C 1.34776 * 120.00268 * 180.02562 * 14 13 11 16 16 O 1.21283 * 119.99483 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00161 * 180.02562 * 15 14 13 18 18 S 1.80998 * 109.47141 * 179.97438 * 17 15 14 19 19 C 1.76206 * 100.00219 * 180.02562 * 18 17 15 20 20 H 1.07997 * 119.99867 * 359.97438 * 19 18 17 21 21 C 1.38801 * 119.99806 * 180.02562 * 19 18 17 22 22 N 1.31627 * 119.99493 * 179.97438 * 21 19 18 23 23 Si 1.86797 * 120.00324 * 359.97438 * 21 19 18 24 24 H 1.48508 * 109.46848 * 90.00010 * 23 21 19 25 25 H 1.48495 * 109.47117 * 209.99897 * 23 21 19 26 26 H 1.48498 * 109.47356 * 330.00286 * 23 21 19 27 27 C 1.53878 * 110.03101 * 203.62239 * 7 6 4 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 32 32 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 0.97000 * 120.00145 * 0.02562 * 6 4 2 36 36 H 1.08998 * 110.49218 * 261.57619 * 9 7 6 37 37 H 1.09004 * 110.48892 * 24.22194 * 9 7 6 38 38 H 1.08994 * 110.75748 * 80.37062 * 10 9 7 39 39 H 1.08998 * 110.76231 * 203.55940 * 10 9 7 40 40 H 1.08995 * 109.47200 * 186.45938 * 13 11 10 41 41 H 1.09007 * 109.46631 * 306.45771 * 13 11 10 42 42 H 0.97005 * 120.00040 * 0.02562 * 14 13 11 43 43 H 1.08995 * 109.47443 * 299.99879 * 17 15 14 44 44 H 1.09003 * 109.47676 * 60.00071 * 17 15 14 45 45 H 0.97008 * 120.00242 * 180.02562 * 22 21 19 46 46 H 1.08994 * 110.03198 * 359.97438 * 27 7 6 47 47 H 1.09000 * 110.03210 * 121.43525 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -0.1210 2.0287 6 7 1.7068 -2.0008 1.4436 7 6 2.1956 -2.6916 2.6395 8 1 3.1948 -2.3372 2.8929 9 6 1.2335 -2.4485 3.8205 10 6 1.2221 -3.7958 4.5847 11 6 1.2713 -4.8383 3.4402 12 1 0.2783 -4.9858 3.0156 13 6 1.8374 -6.1656 3.9489 14 7 0.9067 -6.7554 4.9143 15 6 1.1990 -7.9343 5.4984 16 8 2.2323 -8.5071 5.2244 17 6 0.2413 -8.5413 6.4911 18 16 0.9110 -10.1114 7.0930 19 6 -0.3727 -10.5864 8.2026 20 1 -1.2375 -9.9524 8.3310 21 6 -0.2720 -11.7749 8.9124 22 7 -1.2308 -12.1295 9.7416 23 14 1.2241 -12.8713 8.6908 24 1 2.2699 -12.4857 9.6721 25 1 0.8367 -14.2878 8.9112 26 1 1.7550 -12.7119 7.3132 27 6 2.2198 -4.2111 2.3976 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.1495 -2.4723 0.8049 36 1 1.6090 -1.6501 4.4605 37 1 0.2347 -2.2084 3.4558 38 1 2.0994 -3.8839 5.2254 39 1 0.3074 -3.9014 5.1680 40 1 1.9720 -6.8485 3.1101 41 1 2.7986 -5.9894 4.4318 42 1 0.0801 -6.2975 5.1331 43 1 0.1060 -7.8584 7.3297 44 1 -0.7195 -8.7181 6.0078 45 1 -1.1603 -12.9599 10.2380 46 1 1.8674 -4.4344 1.3907 47 1 3.2308 -4.5948 2.5340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001756635787.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:22 Heat of formation + Delta-G solvation = -131.437042 kcal Electronic energy + Delta-G solvation = -24825.902809 eV Core-core repulsion = 21132.386930 eV Total energy + Delta-G solvation = -3693.515880 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24086 -40.64605 -39.14693 -36.03509 -35.44653 -34.66987 -34.23464 -31.65058 -30.01003 -29.04920 -27.90913 -27.83080 -25.45835 -24.24727 -21.95196 -21.44728 -21.11818 -20.75956 -19.82598 -18.24163 -17.82284 -17.49719 -17.25842 -17.04142 -16.67607 -16.28938 -15.86799 -15.72589 -15.33415 -15.02186 -14.89505 -14.74034 -14.51929 -14.45437 -13.90547 -13.67230 -13.34556 -13.30523 -13.15910 -13.09676 -12.99742 -12.80712 -12.72360 -12.46905 -12.12550 -12.04703 -11.96505 -11.86105 -11.78433 -11.76704 -11.57078 -11.16821 -10.98559 -10.71411 -10.52706 -10.10433 -10.03395 -8.98950 -8.51228 -6.21915 1.00278 1.31804 1.47439 1.56997 1.59253 1.66118 2.19723 2.25208 2.32748 2.73136 2.87187 3.45980 3.59109 3.73342 3.75679 3.93075 4.00988 4.07791 4.23416 4.30785 4.40741 4.43976 4.46844 4.48692 4.51185 4.56576 4.61127 4.75524 4.76708 4.89503 4.91449 4.93537 4.98387 5.07961 5.10442 5.18297 5.24929 5.32632 5.33537 5.37738 5.49837 5.62206 5.71018 6.11744 6.50077 6.59556 6.94158 7.22629 7.30637 8.61084 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.043772 B = 0.001675 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.519468 B =16714.087161 C =16926.589626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C -0.134 4.134 4 C 0.509 3.491 5 O -0.590 6.590 6 N -0.711 5.711 7 C 0.141 3.859 8 H 0.066 0.934 9 C -0.127 4.127 10 C -0.119 4.119 11 C -0.088 4.088 12 H 0.105 0.895 13 C 0.127 3.873 14 N -0.709 5.709 15 C 0.534 3.466 16 O -0.566 6.566 17 C -0.112 4.112 18 S -0.178 6.178 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.046 3.954 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.263 1.263 25 H -0.259 1.259 26 H -0.237 1.237 27 C -0.115 4.115 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.416 0.584 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.416 0.584 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.277 0.723 46 H 0.097 0.903 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 25.821 -23.957 35.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.132 4.132 3 C -0.192 4.192 4 C 0.297 3.703 5 O -0.470 6.470 6 N -0.364 5.364 7 C 0.036 3.964 8 H 0.084 0.916 9 C -0.166 4.166 10 C -0.157 4.157 11 C -0.107 4.107 12 H 0.124 0.876 13 C 0.004 3.996 14 N -0.363 5.363 15 C 0.319 3.681 16 O -0.444 6.444 17 C -0.263 4.263 18 S 0.048 5.952 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.159 4.159 22 N -0.555 5.555 23 Si 0.736 3.264 24 H -0.188 1.188 25 H -0.183 1.183 26 H -0.161 1.161 27 C -0.153 4.153 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.138 0.862 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.254 0.746 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.253 0.747 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.086 0.914 46 H 0.116 0.884 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.675 25.178 -23.741 34.801 hybrid contribution -1.308 0.036 0.920 1.600 sum 2.367 25.214 -22.820 34.090 Atomic orbital electron populations 1.21798 0.91291 1.03590 1.03167 1.21370 0.98733 0.97305 0.95813 1.21622 1.00828 0.94411 1.02325 1.21364 0.78947 0.82127 0.87899 1.90691 1.40100 1.67092 1.49085 1.46149 1.53312 1.11697 1.25197 1.21531 0.97642 0.92213 0.85033 0.91568 1.22685 0.99938 0.97465 0.96483 1.22573 1.02784 0.93295 0.97079 1.22141 1.00701 0.91858 0.95994 0.87636 1.21481 0.92390 0.94323 0.91403 1.45714 1.25214 1.21054 1.44305 1.19943 0.85956 0.81333 0.80871 1.90692 1.27582 1.62445 1.63701 1.23278 1.02277 0.99304 1.01404 1.84726 1.31760 1.23899 1.54785 1.22472 1.06848 1.10442 1.27944 0.91913 1.25553 0.98980 0.98038 0.93338 1.70016 1.34227 1.24608 1.26617 0.85871 0.79820 0.79214 0.81488 1.18805 1.18318 1.16063 1.22340 1.00755 0.91992 1.00233 0.93369 0.89790 0.90548 0.86192 0.93720 0.93555 0.89817 0.74648 0.92987 0.90237 0.91985 0.89988 0.91766 0.92584 0.74659 0.86933 0.86702 0.91386 0.88415 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 9.09 71.98 0.65 0.03 16 2 C -0.11 -0.91 3.26 -11.54 -0.04 -0.94 16 3 C -0.13 -1.46 8.48 71.98 0.61 -0.85 16 4 C 0.51 7.63 7.14 87.66 0.63 8.26 16 5 O -0.59 -14.86 15.66 -3.02 -0.05 -14.91 16 6 N -0.71 -6.88 4.94 -439.10 -2.17 -9.05 16 7 C 0.14 1.76 3.23 45.71 0.15 1.91 16 8 H 0.07 1.20 7.61 -2.39 -0.02 1.19 16 9 C -0.13 -1.64 6.52 31.67 0.21 -1.43 16 10 C -0.12 -1.41 6.01 31.89 0.19 -1.22 16 11 C -0.09 -0.89 2.93 -9.71 -0.03 -0.92 16 12 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 13 C 0.13 2.25 4.96 86.38 0.43 2.67 16 14 N -0.71 -14.96 5.40 -463.07 -2.50 -17.46 16 15 C 0.53 17.55 7.85 87.65 0.69 18.24 16 16 O -0.57 -23.67 15.86 -3.04 -0.05 -23.72 16 17 C -0.11 -4.08 6.16 71.23 0.44 -3.64 16 18 S -0.18 -8.93 18.55 -56.49 -1.05 -9.98 16 19 C -0.53 -30.66 10.04 67.95 0.68 -29.98 16 20 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 21 C 0.05 2.71 5.50 84.86 0.47 3.18 16 22 N -0.92 -55.61 13.97 21.65 0.30 -55.31 16 23 Si 0.91 44.89 27.74 68.60 1.90 46.79 16 24 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 27 C -0.11 -1.03 6.14 31.32 0.19 -0.83 16 28 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 30 H 0.08 0.10 7.57 -2.39 -0.02 0.08 16 31 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.04 0.64 8.10 -2.39 -0.02 0.62 16 33 H 0.05 0.64 8.10 -2.39 -0.02 0.62 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.42 1.29 7.71 -92.71 -0.72 0.57 16 36 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.08 0.89 8.05 -2.38 -0.02 0.87 16 38 H 0.06 0.92 8.02 -2.39 -0.02 0.90 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 1.17 8.10 -2.38 -0.02 1.15 16 42 H 0.42 6.09 8.33 -92.70 -0.77 5.31 16 43 H 0.11 3.77 8.14 -2.40 -0.02 3.75 16 44 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 45 H 0.28 15.52 8.31 -92.70 -0.77 14.75 16 46 H 0.10 0.47 7.60 -2.39 -0.02 0.46 16 47 H 0.08 0.82 7.84 -2.39 -0.02 0.80 16 Total: -1.00 -80.69 395.15 1.10 -79.59 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -0.56 Total: 9.57 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 5.27 Total: -5.52 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -4.37 Total: -81.82 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.10 Total: -38.63 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal Total: -80.69 1.10 -79.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756635787.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.850 kcal (2) G-P(sol) polarization free energy of solvation -80.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds