Wall clock time and date at job start Tue Mar 31 2020 16:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.47258 * 90.00647 * 8 6 4 10 10 H 1.48502 * 109.47121 * 210.00245 * 8 6 4 11 11 H 1.48497 * 109.47375 * 330.00253 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.53005 * 109.47093 * 179.97438 * 18 17 16 20 20 C 1.52999 * 109.47054 * 59.99907 * 19 18 17 21 21 O 1.42900 * 109.47037 * 300.00248 * 19 18 17 22 22 C 1.50697 * 109.47039 * 179.97438 * 19 18 17 23 23 C 1.33390 * 125.19990 * 149.71539 * 22 19 18 24 24 C 1.38431 * 114.92021 * 179.85928 * 23 22 19 25 25 C 1.33388 * 114.91814 * 0.43338 * 24 23 22 26 26 S 1.75882 * 125.20569 * 330.02589 * 22 19 18 27 27 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 28 28 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 29 29 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 30 30 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 31 31 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 32 32 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 34 34 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 35 35 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 36 36 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 37 37 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 38 38 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 39 39 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 40 40 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 41 41 H 1.09006 * 109.46727 * 60.00206 * 20 19 18 42 42 H 1.08995 * 109.47368 * 179.97438 * 20 19 18 43 43 H 1.09001 * 109.47120 * 300.00336 * 20 19 18 44 44 H 0.96704 * 113.99842 * 299.99931 * 21 19 18 45 45 H 1.07999 * 122.54219 * 0.02562 * 23 22 19 46 46 H 1.07994 * 122.54214 * 180.20446 * 24 23 22 47 47 H 1.07996 * 125.20125 * 179.78534 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 2.6608 3.9493 4.1333 10 1 1.4322 5.6461 2.9120 11 1 0.3060 3.6294 3.6505 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4282 -3.4033 -2.6169 20 6 7.4605 -4.2970 -1.3756 21 8 8.1888 -2.2187 -2.3709 22 6 8.0200 -4.1471 -3.7864 23 6 9.3080 -4.1348 -4.1332 24 6 9.6199 -4.8983 -5.2450 25 6 8.5838 -5.5233 -5.8063 26 16 7.1169 -5.1578 -4.9072 27 1 -0.3633 0.5899 -0.8415 28 1 -0.3633 -1.0237 -0.0902 29 1 -0.3633 0.4337 0.9316 30 1 3.0797 1.3443 -0.1083 31 1 1.5612 1.9273 -0.8310 32 1 2.9876 4.9176 0.7775 33 1 1.3932 -1.6630 -1.2815 34 1 1.9552 -0.1531 -2.0382 35 1 2.9842 -2.8273 0.2040 36 1 3.4165 -2.8115 -2.2453 37 1 3.9750 -1.2717 -2.9420 38 1 5.4714 -2.8432 -0.9473 39 1 5.4001 -3.9264 -3.1222 40 1 5.9579 -2.3862 -3.8184 41 1 6.8803 -5.2006 -1.5633 42 1 8.4917 -4.5683 -1.1498 43 1 7.0322 -3.7594 -0.5296 44 1 8.2121 -1.6042 -3.1172 45 1 10.0516 -3.5740 -3.5864 46 1 10.6253 -4.9788 -5.6309 47 1 8.6374 -6.1569 -6.6792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772050307.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:25 Heat of formation + Delta-G solvation = -85.318443 kcal Electronic energy + Delta-G solvation = -25723.442159 eV Core-core repulsion = 22031.926132 eV Total energy + Delta-G solvation = -3691.516027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.24545 -39.42550 -37.96107 -37.19908 -35.61534 -34.60051 -32.96795 -31.05670 -29.53276 -29.26367 -27.83350 -26.35208 -25.25159 -24.30838 -22.78540 -21.92482 -21.59264 -20.20588 -18.78299 -18.61045 -17.93003 -17.27978 -16.94485 -16.61609 -16.38289 -16.08214 -15.98099 -15.74756 -15.39894 -15.24921 -14.87814 -14.49894 -14.06281 -13.91323 -13.66821 -13.56931 -13.49990 -13.35776 -13.15820 -13.08241 -12.93180 -12.86928 -12.70295 -12.54759 -12.49309 -12.31875 -12.16074 -12.06466 -11.58443 -11.53311 -11.35357 -11.22698 -10.71425 -10.59876 -9.65444 -9.41101 -9.34692 -8.94648 -8.19639 -6.29139 0.02088 0.66004 1.05970 1.40041 1.42927 1.53153 1.81400 2.40855 2.80778 3.12728 3.30143 3.47311 3.68706 3.70339 3.78069 3.89925 4.05722 4.16470 4.24079 4.34741 4.39559 4.50160 4.58027 4.58739 4.61470 4.65879 4.70230 4.77208 4.79026 4.82415 4.90294 5.08197 5.12917 5.17996 5.21090 5.25796 5.31794 5.37613 5.54258 5.65627 5.97373 6.07847 6.35320 6.40040 6.65788 6.77999 6.86806 7.06055 7.40130 8.91619 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021686 B = 0.002169 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.830497 B =12907.115394 C =13513.518121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.543 5.543 3 C 0.210 3.790 4 C -0.522 4.522 5 H 0.061 0.939 6 C -0.002 4.002 7 N -0.935 5.935 8 Si 0.970 3.030 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.263 1.263 12 C 0.026 3.974 13 C 0.127 3.873 14 H 0.061 0.939 15 O -0.558 6.558 16 C 0.043 3.957 17 N -0.686 5.686 18 C 0.040 3.960 19 C 0.211 3.789 20 C -0.139 4.139 21 O -0.549 6.549 22 C -0.221 4.221 23 C -0.127 4.127 24 C -0.145 4.145 25 C -0.214 4.214 26 S 0.102 5.898 27 H 0.007 0.993 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.002 0.998 31 H -0.041 1.041 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.027 0.973 35 H 0.379 0.621 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.350 0.650 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.385 0.615 45 H 0.143 0.857 46 H 0.158 0.842 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.740 -23.256 -14.343 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.084 3.916 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.200 4.200 7 N -0.576 5.576 8 Si 0.794 3.206 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.187 1.187 12 C -0.103 4.103 13 C 0.067 3.933 14 H 0.080 0.920 15 O -0.363 6.363 16 C -0.087 4.087 17 N -0.320 5.320 18 C -0.090 4.090 19 C 0.168 3.832 20 C -0.197 4.197 21 O -0.356 6.356 22 C -0.339 4.339 23 C -0.158 4.158 24 C -0.175 4.175 25 C -0.349 4.349 26 S 0.365 5.635 27 H 0.026 0.974 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.020 0.980 31 H -0.024 1.024 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.046 0.954 35 H 0.226 0.774 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.171 0.829 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.234 0.766 45 H 0.161 0.839 46 H 0.176 0.824 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 9.162 -22.948 -13.497 28.156 hybrid contribution 0.363 0.824 -0.794 1.201 sum 9.526 -22.124 -14.291 28.008 Atomic orbital electron populations 1.22216 0.87417 1.00916 1.00014 1.61930 1.07907 1.15110 1.41697 1.19382 0.93668 0.83885 0.94693 1.21480 1.34709 0.97436 1.02448 0.92087 1.25947 0.95093 0.98154 1.00761 1.70089 1.39435 1.11880 1.36165 0.85378 0.78951 0.77271 0.78990 1.20052 1.20610 1.18709 1.22803 0.96982 0.98636 0.91844 1.21670 0.93951 0.92634 0.85090 0.92049 1.86662 1.74497 1.35434 1.39737 1.22483 0.88813 0.99491 0.97909 1.60188 1.17962 1.48291 1.05554 1.22640 0.94565 0.97274 0.94484 1.19438 0.88354 0.84485 0.90946 1.21801 1.03431 0.98494 0.95926 1.86585 1.73505 1.31237 1.44266 1.25288 0.98238 1.07228 1.03122 1.20277 0.95649 1.01444 0.98427 1.20433 1.01249 0.99009 0.96776 1.26044 0.95269 1.07546 1.06043 1.84279 1.11531 1.45420 1.22271 0.97440 0.89760 0.92802 0.97963 1.02363 0.92740 0.88368 0.95448 0.77361 0.92575 0.90529 0.82917 0.93434 0.90603 0.89975 0.91604 0.91362 0.76584 0.83900 0.82413 0.79723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.62 9.31 127.69 1.19 2.81 16 2 N -0.54 -23.71 4.59 -927.06 -4.25 -27.96 16 3 C 0.21 11.62 4.55 85.56 0.39 12.01 16 4 C -0.52 -30.85 8.58 25.60 0.22 -30.63 16 5 H 0.06 3.54 7.10 -2.91 -0.02 3.52 16 6 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 7 N -0.94 -58.20 13.29 21.45 0.28 -57.92 16 8 Si 0.97 45.90 29.54 68.60 2.03 47.93 16 9 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 12 C 0.03 0.89 4.65 86.30 0.40 1.29 16 13 C 0.13 4.14 3.31 30.59 0.10 4.25 16 14 H 0.06 2.65 6.73 -2.39 -0.02 2.63 16 15 O -0.56 -17.86 12.58 -148.98 -1.87 -19.73 16 16 C 0.04 1.03 5.39 86.30 0.47 1.50 16 17 N -0.69 -16.54 6.34 -513.89 -3.26 -19.80 16 18 C 0.04 0.77 4.36 86.31 0.38 1.15 16 19 C 0.21 4.00 1.10 -11.54 -0.01 3.99 16 20 C -0.14 -2.54 8.49 71.98 0.61 -1.93 16 21 O -0.55 -12.30 12.32 -148.98 -1.83 -14.14 16 22 C -0.22 -3.75 5.25 24.59 0.13 -3.62 16 23 C -0.13 -2.06 9.63 21.22 0.20 -1.86 16 24 C -0.14 -1.92 10.18 21.22 0.22 -1.70 16 25 C -0.21 -2.64 11.23 66.72 0.75 -1.89 16 26 S 0.10 1.47 22.08 -56.49 -1.25 0.22 16 27 H 0.01 0.27 8.08 -2.39 -0.02 0.26 16 28 H 0.08 2.48 7.85 -2.39 -0.02 2.46 16 29 H 0.05 2.23 7.01 -2.39 -0.02 2.21 16 30 H 0.00 0.14 6.60 -2.39 -0.02 0.12 16 31 H -0.04 -2.46 8.07 -2.38 -0.02 -2.48 16 32 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.10 2.53 7.75 -2.39 -0.02 2.52 16 34 H 0.03 0.96 8.00 -2.39 -0.02 0.94 16 35 H 0.38 8.34 9.05 -74.06 -0.67 7.67 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.35 8.46 6.16 -89.69 -0.55 7.91 16 39 H 0.05 0.80 7.54 -2.38 -0.02 0.79 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 1.40 6.57 -2.39 -0.02 1.38 16 44 H 0.39 6.85 9.04 -74.05 -0.67 6.18 16 45 H 0.14 2.28 7.90 -2.91 -0.02 2.25 16 46 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 47 H 0.19 1.35 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -72.97 392.14 -5.56 -78.53 By element: Atomic # 1 Polarization: 28.06 SS G_CDS: -0.91 Total: 27.15 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 5.50 Total: -14.28 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -7.23 Total: -105.68 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -3.71 Total: -33.87 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -1.25 Total: 0.22 kcal Total: -72.97 -5.56 -78.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772050307.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.784 kcal (2) G-P(sol) polarization free energy of solvation -72.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds