Wall clock time and date at job start Tue Mar 31 2020 16:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46911 * 110.99838 * 2 1 4 4 C 1.50703 * 109.46517 * 293.95013 * 3 2 1 5 5 H 1.07997 * 120.00629 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99679 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99874 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47100 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46834 * 120.00123 * 8 6 4 11 11 H 1.48496 * 109.47055 * 239.99816 * 8 6 4 12 12 C 1.46900 * 111.00406 * 123.94840 * 2 1 3 13 13 C 1.52998 * 109.47575 * 164.01084 * 12 2 1 14 14 H 1.09000 * 109.46620 * 58.51649 * 13 12 2 15 15 O 1.42892 * 109.47100 * 298.51330 * 13 12 2 16 16 C 1.52994 * 109.47048 * 178.51066 * 13 12 2 17 17 N 1.46904 * 109.46800 * 185.00288 * 16 13 12 18 18 C 1.46905 * 110.99548 * 179.97438 * 17 16 13 19 19 C 1.53003 * 109.46563 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47442 * 305.00178 * 19 18 17 21 21 O 1.42897 * 109.47214 * 65.00469 * 19 18 17 22 22 C 1.50710 * 109.46923 * 185.00042 * 19 18 17 23 23 C 1.33383 * 125.20311 * 210.00259 * 22 19 18 24 24 C 1.38422 * 114.92260 * 179.97438 * 23 22 19 25 25 C 1.33385 * 114.91904 * 359.97438 * 24 23 22 26 26 S 1.75880 * 125.19924 * 29.69523 * 22 19 18 27 27 H 1.08999 * 109.47836 * 301.53567 * 1 2 3 28 28 H 1.08998 * 109.47280 * 61.53904 * 1 2 3 29 29 H 1.09003 * 109.46966 * 181.53339 * 1 2 3 30 30 H 1.08997 * 109.46839 * 53.94846 * 3 2 1 31 31 H 1.08994 * 109.46941 * 173.95601 * 3 2 1 32 32 H 0.96998 * 119.99809 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46509 * 44.01161 * 12 2 1 34 34 H 1.09005 * 109.46884 * 284.01889 * 12 2 1 35 35 H 0.96696 * 114.00476 * 299.99690 * 15 13 12 36 36 H 1.08992 * 109.47411 * 65.00360 * 16 13 12 37 37 H 1.09000 * 109.47589 * 305.00125 * 16 13 12 38 38 H 1.00894 * 111.00129 * 56.04926 * 17 16 13 39 39 H 1.09001 * 109.47275 * 60.00687 * 18 17 16 40 40 H 1.08998 * 109.47550 * 299.99574 * 18 17 16 41 41 H 1.08998 * 109.46955 * 180.02562 * 20 19 18 42 42 H 1.09004 * 109.46414 * 300.00269 * 20 19 18 43 43 H 1.08991 * 109.47218 * 59.99820 * 20 19 18 44 44 H 0.96696 * 114.00588 * 59.99641 * 21 19 18 45 45 H 1.07998 * 122.53990 * 359.97438 * 23 22 19 46 46 H 1.08001 * 122.54404 * 180.02562 * 24 23 22 47 47 H 1.07997 * 125.20722 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2986 5 1 1.0739 1.5114 -2.0486 6 6 2.0266 3.3495 -1.5287 7 7 2.7117 4.0020 -0.6151 8 14 1.5816 4.1871 -3.1379 9 1 0.8136 3.2447 -3.9907 10 1 0.7540 5.3880 -2.8585 11 1 2.8230 4.5948 -3.8435 12 6 1.9955 -0.7658 1.1376 13 6 3.4728 -1.0838 0.8985 14 1 4.0281 -0.1548 0.7699 15 8 3.6034 -1.8838 -0.2783 16 6 4.0307 -1.8492 2.1000 17 7 5.4754 -2.0499 1.9248 18 6 6.0468 -2.7828 3.0626 19 6 7.5492 -2.9725 2.8442 20 6 7.7863 -3.6569 1.4964 21 8 8.1963 -1.6985 2.8518 22 6 8.1132 -3.8290 3.9486 23 6 9.3585 -3.7536 4.4204 24 6 9.6509 -4.6433 5.4397 25 6 8.6429 -5.4409 5.7959 26 16 7.2275 -5.0754 4.8177 27 1 -0.3635 0.5375 0.8758 28 1 -0.3634 0.4897 -0.9034 29 1 -0.3633 -1.0273 0.0275 30 1 1.5609 1.9274 0.8308 31 1 3.0796 1.3445 0.1082 32 1 2.9863 4.9181 -0.7771 33 1 1.4356 -1.6955 1.2399 34 1 1.8933 -0.1779 2.0498 35 1 3.1334 -2.7277 -0.2345 36 1 3.5360 -2.8175 2.1756 37 1 3.8510 -1.2774 3.0104 38 1 5.9487 -1.1694 1.7878 39 1 5.5661 -3.7576 3.1452 40 1 5.8812 -2.2170 3.9794 41 1 8.8566 -3.7924 1.3411 42 1 7.2926 -4.6287 1.4907 43 1 7.3784 -3.0375 0.6977 44 1 8.0878 -1.2071 3.6775 45 1 10.0837 -3.0516 4.0363 46 1 10.6215 -4.6879 5.9113 47 1 8.6878 -6.1937 6.5689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772050309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:39 Heat of formation + Delta-G solvation = -58.227243 kcal Electronic energy + Delta-G solvation = -25745.506148 eV Core-core repulsion = 22055.164884 eV Total energy + Delta-G solvation = -3690.341264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.46792 -38.09488 -37.18995 -35.67282 -34.55459 -32.45685 -32.18021 -29.77981 -28.67989 -27.32800 -26.67121 -25.06661 -23.96006 -23.06504 -21.59731 -21.08887 -19.99680 -19.54340 -18.14334 -16.91807 -16.48850 -16.21528 -15.72554 -15.55970 -15.05425 -14.76908 -14.67815 -14.58253 -14.15620 -14.03115 -13.36838 -13.30533 -13.15431 -12.90585 -12.57469 -12.51749 -12.40308 -12.30669 -11.97214 -11.89712 -11.78945 -11.44867 -11.34496 -11.13407 -10.91318 -10.90393 -10.68792 -10.60207 -10.48656 -10.32572 -9.72658 -9.46209 -9.09505 -9.01610 -8.80786 -8.43841 -8.38804 -7.17972 -5.99072 -3.99084 0.63503 1.27472 1.66161 2.41476 3.34488 3.41755 3.47183 3.72361 4.09188 4.44037 4.49451 4.53834 4.72375 4.75068 4.90404 4.96386 5.14414 5.27059 5.27883 5.35168 5.36396 5.39296 5.52215 5.62326 5.69305 5.71780 5.75388 5.81413 5.83580 5.96984 6.05387 6.11289 6.13838 6.25708 6.35121 6.51974 6.73297 6.87925 7.28583 7.30673 7.33381 7.36631 7.84090 8.11563 8.20568 8.29638 8.59138 9.08386 9.64721 11.12191 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.002197 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.184842 B =12741.935026 C =13437.468649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.530 5.530 3 C 0.192 3.808 4 C -0.502 4.502 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.284 1.284 12 C 0.026 3.974 13 C 0.119 3.881 14 H 0.101 0.899 15 O -0.530 6.530 16 C 0.028 3.972 17 N -0.669 5.669 18 C 0.035 3.965 19 C 0.207 3.793 20 C -0.124 4.124 21 O -0.542 6.542 22 C -0.207 4.207 23 C -0.125 4.125 24 C -0.135 4.135 25 C -0.218 4.218 26 S 0.107 5.893 27 H 0.009 0.991 28 H 0.073 0.927 29 H 0.042 0.958 30 H -0.013 1.013 31 H 0.032 0.968 32 H 0.260 0.740 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.360 0.640 36 H 0.071 0.929 37 H 0.034 0.966 38 H 0.352 0.648 39 H 0.078 0.922 40 H 0.033 0.967 41 H 0.056 0.944 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.376 0.624 45 H 0.144 0.856 46 H 0.139 0.861 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.697 -19.452 14.707 26.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.541 4.541 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.210 1.210 12 C -0.104 4.104 13 C 0.059 3.941 14 H 0.119 0.881 15 O -0.332 6.332 16 C -0.102 4.102 17 N -0.301 5.301 18 C -0.096 4.096 19 C 0.164 3.836 20 C -0.182 4.182 21 O -0.348 6.348 22 C -0.325 4.325 23 C -0.155 4.155 24 C -0.166 4.166 25 C -0.353 4.353 26 S 0.370 5.630 27 H 0.028 0.972 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.005 0.995 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.205 0.795 36 H 0.090 0.910 37 H 0.053 0.947 38 H 0.171 0.829 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.107 0.893 44 H 0.223 0.777 45 H 0.162 0.838 46 H 0.157 0.843 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 9.916 -20.314 13.062 26.108 hybrid contribution 0.490 1.838 1.869 2.666 sum 10.406 -18.476 14.931 25.934 Atomic orbital electron populations 1.22194 0.88889 0.98865 1.00899 1.62039 1.06468 1.17830 1.39120 1.19782 0.95505 0.81468 0.96533 1.21193 1.34443 0.96745 1.01672 0.91819 1.24993 0.95376 0.97401 0.96992 1.69965 1.38669 1.11375 1.34057 0.86440 0.78154 0.79208 0.83623 1.19649 1.21239 1.20976 1.22683 0.95991 0.98175 0.93552 1.21852 0.94473 0.94039 0.83763 0.88083 1.86696 1.75392 1.33060 1.38055 1.22744 0.88772 1.00427 0.98265 1.60308 1.03061 1.26983 1.39771 1.22648 0.94315 0.99885 0.92719 1.19618 0.89449 0.82047 0.92486 1.21638 1.01840 1.00153 0.94527 1.86643 1.76854 1.29651 1.41632 1.25385 0.98629 1.04260 1.04208 1.20105 0.96173 1.01259 0.97961 1.20211 1.00311 0.97025 0.99029 1.25720 0.96997 1.06403 1.06222 1.84331 1.14578 1.33228 1.30864 0.97230 0.90780 0.93880 0.99493 0.95046 0.93064 0.92138 0.95386 0.79509 0.91023 0.94733 0.82870 0.90348 0.94883 0.92445 0.91393 0.89255 0.77690 0.83833 0.84304 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 9.32 60.06 0.56 1.35 16 2 N -0.53 -11.54 4.60 -244.37 -1.12 -12.67 16 3 C 0.19 5.06 4.57 -4.97 -0.02 5.04 16 4 C -0.50 -14.41 8.54 -34.44 -0.29 -14.70 16 5 H 0.06 1.83 7.10 -52.49 -0.37 1.45 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.03 0.45 4.63 -3.83 -0.02 0.43 16 13 C 0.12 1.94 3.17 -26.74 -0.08 1.85 16 14 H 0.10 1.97 6.55 -51.93 -0.34 1.63 16 15 O -0.53 -9.14 13.18 -35.23 -0.46 -9.60 16 16 C 0.03 0.35 5.32 -3.82 -0.02 0.33 16 17 N -0.67 -8.08 5.47 -113.78 -0.62 -8.71 16 18 C 0.03 0.35 4.47 -3.82 -0.02 0.33 16 19 C 0.21 2.03 1.10 -91.76 -0.10 1.93 16 20 C -0.12 -1.31 8.61 37.16 0.32 -0.99 16 21 O -0.54 -5.52 11.98 -35.23 -0.42 -5.94 16 22 C -0.21 -1.88 5.25 -36.00 -0.19 -2.07 16 23 C -0.12 -1.08 9.63 -41.21 -0.40 -1.47 16 24 C -0.14 -1.03 10.18 -41.21 -0.42 -1.45 16 25 C -0.22 -1.60 11.23 29.04 0.33 -1.28 16 26 S 0.11 0.88 21.93 -107.50 -2.36 -1.48 16 27 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 28 H 0.07 1.55 6.90 -51.93 -0.36 1.20 16 29 H 0.04 0.70 7.97 -51.93 -0.41 0.29 16 30 H -0.01 -0.36 8.11 -51.93 -0.42 -0.78 16 31 H 0.03 0.88 6.38 -51.93 -0.33 0.55 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.06 0.89 7.88 -51.93 -0.41 0.48 16 34 H 0.03 0.49 8.05 -51.93 -0.42 0.07 16 35 H 0.36 4.82 9.05 45.56 0.41 5.23 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.35 4.60 8.29 -39.29 -0.33 4.28 16 39 H 0.08 0.77 7.29 -51.93 -0.38 0.40 16 40 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.09 1.09 7.47 -51.93 -0.39 0.70 16 44 H 0.38 2.74 9.04 45.56 0.41 3.15 16 45 H 0.14 1.17 7.91 -52.49 -0.42 0.76 16 46 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 47 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -32.53 394.04 -10.06 -42.59 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.26 Total: 8.41 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: -0.45 Total: -9.26 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: -1.01 Total: -47.72 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.89 Total: -15.54 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.36 Total: -1.48 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.53 -10.06 -42.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772050309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.642 kcal (2) G-P(sol) polarization free energy of solvation -32.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds