Wall clock time and date at job start Tue Mar 31 2020 16:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46911 * 110.99838 * 2 1 4 4 C 1.50703 * 109.46517 * 293.95013 * 3 2 1 5 5 H 1.07997 * 120.00629 * 0.02562 * 4 3 2 6 6 C 1.37880 * 119.99679 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99874 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99982 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47100 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46834 * 120.00123 * 8 6 4 11 11 H 1.48496 * 109.47055 * 239.99816 * 8 6 4 12 12 C 1.46900 * 111.00406 * 123.94840 * 2 1 3 13 13 C 1.52998 * 109.47575 * 164.01084 * 12 2 1 14 14 H 1.09000 * 109.46620 * 58.51649 * 13 12 2 15 15 O 1.42892 * 109.47100 * 298.51330 * 13 12 2 16 16 C 1.52994 * 109.47048 * 178.51066 * 13 12 2 17 17 N 1.46904 * 109.46800 * 185.00288 * 16 13 12 18 18 C 1.46905 * 110.99548 * 179.97438 * 17 16 13 19 19 C 1.53003 * 109.46563 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47442 * 305.00178 * 19 18 17 21 21 O 1.42897 * 109.47214 * 65.00469 * 19 18 17 22 22 C 1.50710 * 109.46923 * 185.00042 * 19 18 17 23 23 C 1.33383 * 125.20311 * 210.00259 * 22 19 18 24 24 C 1.38422 * 114.92260 * 179.97438 * 23 22 19 25 25 C 1.33385 * 114.91904 * 359.97438 * 24 23 22 26 26 S 1.75880 * 125.19924 * 29.69523 * 22 19 18 27 27 H 1.08999 * 109.47836 * 301.53567 * 1 2 3 28 28 H 1.08998 * 109.47280 * 61.53904 * 1 2 3 29 29 H 1.09003 * 109.46966 * 181.53339 * 1 2 3 30 30 H 1.08997 * 109.46839 * 53.94846 * 3 2 1 31 31 H 1.08994 * 109.46941 * 173.95601 * 3 2 1 32 32 H 0.96998 * 119.99809 * 179.97438 * 7 6 4 33 33 H 1.09005 * 109.46509 * 44.01161 * 12 2 1 34 34 H 1.09005 * 109.46884 * 284.01889 * 12 2 1 35 35 H 0.96696 * 114.00476 * 299.99690 * 15 13 12 36 36 H 1.08992 * 109.47411 * 65.00360 * 16 13 12 37 37 H 1.09000 * 109.47589 * 305.00125 * 16 13 12 38 38 H 1.00894 * 111.00129 * 56.04926 * 17 16 13 39 39 H 1.09001 * 109.47275 * 60.00687 * 18 17 16 40 40 H 1.08998 * 109.47550 * 299.99574 * 18 17 16 41 41 H 1.08998 * 109.46955 * 180.02562 * 20 19 18 42 42 H 1.09004 * 109.46414 * 300.00269 * 20 19 18 43 43 H 1.08991 * 109.47218 * 59.99820 * 20 19 18 44 44 H 0.96696 * 114.00588 * 59.99641 * 21 19 18 45 45 H 1.07998 * 122.53990 * 359.97438 * 23 22 19 46 46 H 1.08001 * 122.54404 * 180.02562 * 24 23 22 47 47 H 1.07997 * 125.20722 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2986 5 1 1.0739 1.5114 -2.0486 6 6 2.0266 3.3495 -1.5287 7 7 2.7117 4.0020 -0.6151 8 14 1.5816 4.1871 -3.1379 9 1 0.8136 3.2447 -3.9907 10 1 0.7540 5.3880 -2.8585 11 1 2.8230 4.5948 -3.8435 12 6 1.9955 -0.7658 1.1376 13 6 3.4728 -1.0838 0.8985 14 1 4.0281 -0.1548 0.7699 15 8 3.6034 -1.8838 -0.2783 16 6 4.0307 -1.8492 2.1000 17 7 5.4754 -2.0499 1.9248 18 6 6.0468 -2.7828 3.0626 19 6 7.5492 -2.9725 2.8442 20 6 7.7863 -3.6569 1.4964 21 8 8.1963 -1.6985 2.8518 22 6 8.1132 -3.8290 3.9486 23 6 9.3585 -3.7536 4.4204 24 6 9.6509 -4.6433 5.4397 25 6 8.6429 -5.4409 5.7959 26 16 7.2275 -5.0754 4.8177 27 1 -0.3635 0.5375 0.8758 28 1 -0.3634 0.4897 -0.9034 29 1 -0.3633 -1.0273 0.0275 30 1 1.5609 1.9274 0.8308 31 1 3.0796 1.3445 0.1082 32 1 2.9863 4.9181 -0.7771 33 1 1.4356 -1.6955 1.2399 34 1 1.8933 -0.1779 2.0498 35 1 3.1334 -2.7277 -0.2345 36 1 3.5360 -2.8175 2.1756 37 1 3.8510 -1.2774 3.0104 38 1 5.9487 -1.1694 1.7878 39 1 5.5661 -3.7576 3.1452 40 1 5.8812 -2.2170 3.9794 41 1 8.8566 -3.7924 1.3411 42 1 7.2926 -4.6287 1.4907 43 1 7.3784 -3.0375 0.6977 44 1 8.0878 -1.2071 3.6775 45 1 10.0837 -3.0516 4.0363 46 1 10.6215 -4.6879 5.9113 47 1 8.6878 -6.1937 6.5689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772050309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:37 Heat of formation + Delta-G solvation = -85.265418 kcal Electronic energy + Delta-G solvation = -25746.678611 eV Core-core repulsion = 22055.164884 eV Total energy + Delta-G solvation = -3691.513728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.25140 -39.39773 -37.97224 -37.13960 -35.62743 -34.59741 -33.03284 -31.00945 -29.51294 -29.26040 -27.78909 -26.26866 -25.23511 -24.29086 -22.88540 -21.97941 -21.57118 -20.19406 -18.82058 -18.60000 -17.90900 -17.15576 -16.91266 -16.72064 -16.39100 -16.02887 -16.01109 -15.65789 -15.40000 -15.16475 -14.76808 -14.71900 -14.04440 -13.92912 -13.87058 -13.50488 -13.30965 -13.24350 -13.12931 -13.09688 -12.91525 -12.81214 -12.68245 -12.57312 -12.53303 -12.30885 -12.17114 -12.15450 -11.56246 -11.50731 -11.32386 -11.26163 -10.64297 -10.60426 -9.65899 -9.43560 -9.35548 -8.94310 -8.20484 -6.29399 0.02098 0.66006 1.06104 1.39528 1.41236 1.54537 1.81194 2.40540 2.80756 3.12079 3.28411 3.41627 3.67101 3.78508 3.79501 3.92935 4.02510 4.21981 4.24102 4.37430 4.44343 4.52461 4.55021 4.58146 4.61553 4.67212 4.70198 4.74625 4.78183 4.92129 4.99451 5.07881 5.12115 5.20200 5.24636 5.31396 5.32418 5.40675 5.54081 5.65614 5.95831 6.07517 6.28261 6.35678 6.66017 6.68649 6.86658 7.16120 7.39858 8.90911 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.002197 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.184842 B =12741.935026 C =13437.468649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.210 3.790 4 C -0.521 4.521 5 H 0.060 0.940 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.026 3.974 13 C 0.127 3.873 14 H 0.058 0.942 15 O -0.552 6.552 16 C 0.042 3.958 17 N -0.677 5.677 18 C 0.041 3.959 19 C 0.211 3.789 20 C -0.122 4.122 21 O -0.557 6.557 22 C -0.221 4.221 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.214 4.214 26 S 0.103 5.897 27 H 0.008 0.992 28 H 0.054 0.946 29 H 0.083 0.917 30 H -0.042 1.042 31 H 0.005 0.995 32 H 0.264 0.736 33 H 0.098 0.902 34 H 0.026 0.974 35 H 0.378 0.622 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.343 0.657 39 H 0.085 0.915 40 H 0.039 0.961 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.387 0.613 45 H 0.144 0.856 46 H 0.159 0.841 47 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 -21.224 15.307 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.202 1.202 11 H -0.205 1.205 12 C -0.103 4.103 13 C 0.067 3.933 14 H 0.076 0.924 15 O -0.357 6.357 16 C -0.088 4.088 17 N -0.308 5.308 18 C -0.089 4.089 19 C 0.168 3.832 20 C -0.179 4.179 21 O -0.364 6.364 22 C -0.339 4.339 23 C -0.158 4.158 24 C -0.175 4.175 25 C -0.349 4.349 26 S 0.367 5.633 27 H 0.026 0.974 28 H 0.072 0.928 29 H 0.102 0.898 30 H -0.024 1.024 31 H 0.023 0.977 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.044 0.956 35 H 0.226 0.774 36 H 0.113 0.887 37 H 0.058 0.942 38 H 0.161 0.839 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.236 0.764 45 H 0.161 0.839 46 H 0.176 0.824 47 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 9.537 -22.119 13.680 27.701 hybrid contribution 0.635 2.317 1.731 2.961 sum 10.172 -19.802 15.411 27.076 Atomic orbital electron populations 1.22215 0.87469 1.01151 0.99835 1.61937 1.07880 1.15135 1.41711 1.19385 0.93789 0.83869 0.94634 1.21512 1.34552 0.97391 1.02472 0.92146 1.25925 0.95116 0.98140 1.00714 1.70087 1.39528 1.11840 1.36118 0.85342 0.78069 0.78196 0.79066 1.18788 1.20231 1.20476 1.22809 0.96906 0.98843 0.91727 1.21632 0.93540 0.93055 0.85118 0.92354 1.86648 1.75988 1.34248 1.38799 1.22555 0.89062 1.00915 0.96255 1.60308 1.02849 1.26610 1.41053 1.22635 0.94431 0.99808 0.92056 1.19488 0.89272 0.82013 0.92384 1.21592 1.01633 1.00179 0.94530 1.86611 1.76993 1.30115 1.42717 1.25270 0.99105 1.04947 1.04596 1.20268 0.96027 1.01389 0.98146 1.20430 1.01376 0.96794 0.98890 1.26053 0.96211 1.06492 1.06158 1.84298 1.15131 1.32891 1.31030 0.97377 0.92760 0.89827 1.02446 0.97705 0.92754 0.88351 0.95617 0.77439 0.88704 0.94243 0.83880 0.89707 0.94281 0.92611 0.90711 0.91267 0.76412 0.83872 0.82391 0.79698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.58 9.32 127.69 1.19 2.78 16 2 N -0.54 -23.64 4.60 -927.04 -4.27 -27.90 16 3 C 0.21 11.46 4.57 85.56 0.39 11.85 16 4 C -0.52 -30.59 8.54 25.60 0.22 -30.37 16 5 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 6 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 7 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 8 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 9 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.03 0.88 4.63 86.30 0.40 1.28 16 13 C 0.13 4.14 3.17 30.59 0.10 4.23 16 14 H 0.06 2.41 6.55 -2.39 -0.02 2.40 16 15 O -0.55 -18.79 13.18 -148.98 -1.96 -20.76 16 16 C 0.04 1.00 5.32 86.30 0.46 1.46 16 17 N -0.68 -16.15 5.47 -513.88 -2.81 -18.96 16 18 C 0.04 0.78 4.47 86.30 0.39 1.16 16 19 C 0.21 4.06 1.10 -11.53 -0.01 4.04 16 20 C -0.12 -2.57 8.61 71.98 0.62 -1.95 16 21 O -0.56 -11.39 11.98 -148.98 -1.78 -13.17 16 22 C -0.22 -3.80 5.25 24.59 0.13 -3.67 16 23 C -0.13 -2.06 9.63 21.21 0.20 -1.86 16 24 C -0.14 -1.92 10.18 21.21 0.22 -1.70 16 25 C -0.21 -2.66 11.23 66.72 0.75 -1.91 16 26 S 0.10 1.52 21.93 -56.49 -1.24 0.29 16 27 H 0.01 0.30 8.13 -2.39 -0.02 0.28 16 28 H 0.05 2.26 6.90 -2.39 -0.02 2.24 16 29 H 0.08 2.50 7.97 -2.39 -0.02 2.48 16 30 H -0.04 -2.49 8.11 -2.39 -0.02 -2.51 16 31 H 0.00 0.29 6.38 -2.39 -0.02 0.28 16 32 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 33 H 0.10 2.57 7.88 -2.38 -0.02 2.55 16 34 H 0.03 0.89 8.05 -2.38 -0.02 0.87 16 35 H 0.38 9.44 9.05 -74.06 -0.67 8.77 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.34 9.26 8.29 -89.70 -0.74 8.52 16 39 H 0.08 1.53 7.29 -2.39 -0.02 1.51 16 40 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.73 7.47 -2.39 -0.02 1.72 16 44 H 0.39 5.62 9.04 -74.06 -0.67 4.95 16 45 H 0.14 2.25 7.91 -2.91 -0.02 2.23 16 46 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 47 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -71.47 394.04 -5.34 -76.81 By element: Atomic # 1 Polarization: 28.65 SS G_CDS: -1.10 Total: 27.55 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: 5.51 Total: -14.28 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -6.79 Total: -104.16 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -3.75 Total: -33.93 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.24 Total: 0.29 kcal Total: -71.47 -5.34 -76.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772050309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.456 kcal (2) G-P(sol) polarization free energy of solvation -71.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds