Wall clock time and date at job start Tue Mar 31 2020 16:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 C 1.53004 * 109.47001 * 240.00107 * 2 1 3 5 5 O 1.42900 * 109.47397 * 305.00398 * 4 2 1 6 6 N 1.46496 * 109.47035 * 120.00632 * 2 1 3 7 7 C 1.34778 * 119.99599 * 274.99626 * 6 2 1 8 8 O 1.21781 * 120.00272 * 0.02562 * 7 6 2 9 9 C 1.41498 * 120.00140 * 179.97438 * 7 6 2 10 10 C 1.35446 * 120.00268 * 180.02562 * 9 7 6 11 11 C 1.46382 * 120.00222 * 180.02562 * 10 9 7 12 12 C 1.36671 * 126.78456 * 0.02638 * 11 10 9 13 13 N 1.35600 * 109.69744 * 179.97438 * 12 11 10 14 14 C 1.46495 * 124.78236 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47303 * 264.95758 * 14 13 12 16 16 H 1.08003 * 120.00322 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00640 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99365 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00628 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47184 * 89.99642 * 19 17 15 21 21 H 1.48498 * 109.47545 * 210.00097 * 19 17 15 22 22 H 1.48498 * 109.47003 * 330.00371 * 19 17 15 23 23 C 1.37996 * 110.43883 * 359.97438 * 13 12 11 24 24 C 1.39126 * 133.12884 * 179.70764 * 23 13 12 25 25 C 1.37781 * 119.92733 * 179.83429 * 24 23 13 26 26 C 1.38738 * 120.62991 * 0.49783 * 25 24 23 27 27 C 1.37776 * 120.29846 * 359.74825 * 26 25 24 28 28 C 1.39249 * 119.67741 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47105 * 300.00065 * 1 2 3 31 31 H 1.09004 * 109.47016 * 59.99511 * 1 2 3 32 32 H 1.09003 * 109.47162 * 65.00537 * 4 2 1 33 33 H 1.09004 * 109.47195 * 185.00005 * 4 2 1 34 34 H 0.96695 * 114.00463 * 180.02562 * 5 4 2 35 35 H 0.96995 * 120.00646 * 95.00190 * 6 2 1 36 36 H 1.08007 * 119.99665 * 0.02562 * 9 7 6 37 37 H 1.07999 * 120.00397 * 0.02562 * 10 9 7 38 38 H 1.08005 * 125.15017 * 359.94291 * 12 11 10 39 39 H 1.09001 * 109.47464 * 24.95764 * 14 13 12 40 40 H 1.09001 * 109.47688 * 144.95836 * 14 13 12 41 41 H 0.97004 * 119.99576 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.03578 * 0.32433 * 24 23 13 43 43 H 1.07999 * 119.68222 * 180.24222 * 25 24 23 44 44 H 1.08001 * 119.85134 * 179.72667 * 26 25 24 45 45 H 1.08000 * 120.16115 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3096 6 7 2.0183 -0.6907 1.1961 7 6 2.1471 -0.0184 2.3571 8 8 1.8571 1.1631 2.4119 9 6 2.6182 -0.6856 3.5125 10 6 2.7471 -0.0101 4.6794 11 6 3.2350 -0.7001 5.8746 12 6 3.5986 -2.0142 5.9698 13 7 3.9981 -2.2872 7.2366 14 6 4.4579 -3.5973 7.7038 15 6 3.3043 -4.3430 8.3234 16 1 2.3262 -3.8868 8.3647 17 6 3.4970 -5.6080 8.8368 18 7 4.6880 -6.1637 8.7860 19 14 2.0668 -6.5326 9.6042 20 1 1.3762 -7.3313 8.5600 21 1 2.5753 -7.4388 10.6651 22 1 1.1118 -5.5626 10.1977 23 6 3.9116 -1.1568 8.0234 24 6 4.1900 -0.9071 9.3634 25 6 4.0044 0.3566 9.8802 26 6 3.5312 1.3855 9.0788 27 6 3.2449 1.1566 7.7506 28 6 3.4323 -0.1146 7.2141 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -0.1582 -2.1370 33 1 3.1264 -0.7995 -1.2057 34 1 1.7504 -2.5463 -2.0778 35 1 2.2490 -1.6318 1.1525 36 1 2.8750 -1.7335 3.4640 37 1 2.4899 1.0377 4.7281 38 1 3.5714 -2.7272 5.1591 39 1 4.8481 -4.1674 6.8606 40 1 5.2444 -3.4628 8.4464 41 1 4.8235 -7.0539 9.1468 42 1 4.5588 -1.7010 9.9959 43 1 4.2256 0.5470 10.9200 44 1 3.3861 2.3702 9.4980 45 1 2.8770 1.9593 7.1287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097204708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:21 Heat of formation + Delta-G solvation = -24.150215 kcal Electronic energy + Delta-G solvation = -26437.508085 eV Core-core repulsion = 22613.200560 eV Total energy + Delta-G solvation = -3824.307525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.83122 -39.77431 -37.58724 -36.63487 -34.85531 -34.22740 -33.03072 -31.46003 -30.50482 -29.71096 -28.27450 -26.86980 -26.62768 -24.19891 -23.00428 -22.12216 -21.03992 -20.65748 -20.14437 -18.41429 -17.91196 -17.18999 -16.86710 -16.34104 -15.89976 -15.68160 -15.08470 -15.04904 -14.62188 -14.44345 -14.14434 -14.08399 -13.67003 -13.50330 -13.30007 -13.12810 -12.86441 -12.49374 -12.46590 -12.31294 -11.71343 -11.65852 -11.59222 -11.34123 -11.18634 -11.09636 -10.98928 -10.88199 -10.52280 -10.43172 -10.32141 -10.22860 -9.69210 -9.51458 -9.03964 -8.78101 -8.66364 -7.72425 -6.88298 -6.37262 -4.49018 1.10807 1.74249 2.18611 3.13169 3.19774 3.21751 3.27053 3.36467 3.61801 3.84807 3.96053 4.19215 4.41301 4.60251 4.81126 4.94765 5.01725 5.06173 5.17518 5.22875 5.28932 5.38835 5.40940 5.48873 5.58122 5.65069 5.71143 5.83624 5.90813 6.03394 6.13420 6.19539 6.23334 6.40268 6.49750 6.54764 6.66025 6.80152 6.82785 6.96240 7.03938 7.19550 7.23687 7.32666 7.52977 7.71482 7.71714 7.84746 7.90456 8.48462 8.58443 9.19748 10.67751 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009754 B = 0.002941 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.870734 B = 9516.724519 C =11740.389178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.145 3.855 3 H 0.096 0.904 4 C 0.067 3.933 5 O -0.569 6.569 6 N -0.728 5.728 7 C 0.562 3.438 8 O -0.567 6.567 9 C -0.296 4.296 10 C 0.083 3.917 11 C -0.225 4.225 12 C 0.130 3.870 13 N -0.436 5.436 14 C 0.230 3.770 15 C -0.546 4.546 16 H 0.066 0.934 17 C 0.068 3.932 18 N -0.889 5.889 19 Si 0.905 3.095 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.096 3.904 24 C -0.102 4.102 25 C -0.120 4.120 26 C -0.146 4.146 27 C -0.088 4.088 28 C -0.085 4.085 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.380 0.620 35 H 0.404 0.596 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.169 0.831 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.269 0.731 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.116 0.884 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 9.589 -13.951 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.040 3.960 3 H 0.114 0.886 4 C -0.011 4.011 5 O -0.374 6.374 6 N -0.380 5.380 7 C 0.356 3.644 8 O -0.449 6.449 9 C -0.318 4.318 10 C 0.062 3.938 11 C -0.232 4.232 12 C -0.008 4.008 13 N -0.110 5.110 14 C 0.112 3.888 15 C -0.584 4.584 16 H 0.084 0.916 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.195 1.195 23 C -0.011 4.011 24 C -0.122 4.122 25 C -0.139 4.139 26 C -0.165 4.165 27 C -0.106 4.106 28 C -0.089 4.089 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.227 0.773 35 H 0.238 0.762 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.186 0.814 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.142 0.858 43 H 0.137 0.863 44 H 0.134 0.866 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -2.160 10.088 -13.154 16.717 hybrid contribution -0.293 -1.511 -0.156 1.547 sum -2.453 8.577 -13.310 16.023 Atomic orbital electron populations 1.22066 0.94926 1.02749 1.01965 1.20944 0.95049 0.96642 0.83394 0.88591 1.22500 0.96892 0.84279 0.97432 1.86502 1.72938 1.27198 1.50771 1.45910 1.68370 1.14194 1.09483 1.17070 0.77195 0.86578 0.83579 1.90778 1.52349 1.16214 1.85607 1.21402 1.15336 1.01304 0.93770 1.21589 0.84897 0.98226 0.89108 1.18881 1.17917 0.93456 0.92970 1.22252 0.95222 0.95602 0.87682 1.44738 1.48893 1.10312 1.07014 1.19856 0.96500 0.75511 0.96896 1.21322 0.95667 1.00891 1.40475 0.91556 1.24943 0.96384 0.97031 0.95271 1.69919 1.21537 1.16143 1.45039 0.86358 0.81785 0.79575 0.79071 1.20203 1.20796 1.19524 1.18288 1.03228 0.86375 0.93162 1.20210 1.02442 0.97430 0.92143 1.20698 1.01600 0.92272 0.99366 1.20780 1.03071 0.98789 0.93817 1.20323 1.00563 0.94776 0.94977 1.19014 1.03528 0.93532 0.92786 0.91599 0.92104 0.92286 0.92356 0.92943 0.77279 0.76189 0.86299 0.85525 0.81353 0.93139 0.93354 0.92121 0.85826 0.86298 0.86599 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.29 37.16 0.35 -1.32 16 2 C 0.14 1.48 2.98 -67.93 -0.20 1.28 16 3 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 4 C 0.07 0.48 6.79 37.16 0.25 0.73 16 5 O -0.57 -4.19 12.51 -35.23 -0.44 -4.63 16 6 N -0.73 -8.54 5.05 -56.73 -0.29 -8.82 16 7 C 0.56 8.34 7.52 -15.02 -0.11 8.23 16 8 O -0.57 -10.15 15.77 5.12 0.08 -10.06 16 9 C -0.30 -4.28 9.32 -39.34 -0.37 -4.64 16 10 C 0.08 1.31 9.68 -37.30 -0.36 0.95 16 11 C -0.22 -3.95 6.24 -103.41 -0.65 -4.60 16 12 C 0.13 2.35 10.65 -16.45 -0.18 2.18 16 13 N -0.44 -9.05 2.73 -115.38 -0.31 -9.37 16 14 C 0.23 5.37 5.71 -5.20 -0.03 5.34 16 15 C -0.55 -14.06 9.39 -34.44 -0.32 -14.39 16 16 H 0.07 1.77 7.81 -52.48 -0.41 1.36 16 17 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -23.93 13.29 55.43 0.74 -23.19 16 19 Si 0.91 20.30 29.54 -169.99 -5.02 15.28 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 21 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C 0.10 1.93 6.79 -83.95 -0.57 1.36 16 24 C -0.10 -1.90 9.97 -39.42 -0.39 -2.30 16 25 C -0.12 -1.88 10.01 -39.56 -0.40 -2.28 16 26 C -0.15 -2.17 10.03 -39.57 -0.40 -2.56 16 27 C -0.09 -1.42 10.09 -39.37 -0.40 -1.82 16 28 C -0.08 -1.57 6.36 -104.93 -0.67 -2.24 16 29 H 0.06 0.73 7.56 -51.93 -0.39 0.33 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.38 1.15 9.12 45.56 0.42 1.56 16 35 H 0.40 4.13 8.34 -40.82 -0.34 3.79 16 36 H 0.12 1.51 6.88 -52.48 -0.36 1.14 16 37 H 0.13 2.00 7.45 -52.49 -0.39 1.61 16 38 H 0.17 2.58 7.19 -52.48 -0.38 2.20 16 39 H 0.05 1.19 8.11 -51.93 -0.42 0.77 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 43 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 45 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 387.74 15.07 5.84 5.84 Total: -1.00 -31.02 387.74 -9.55 -40.57 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.61 Total: 8.82 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: -4.54 Total: -14.43 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.14 Total: -41.39 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.36 Total: -14.69 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.02 -9.55 -40.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097204708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.416 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds