Wall clock time and date at job start Tue Mar 31 2020 16:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47375 * 2 1 4 4 C 1.53004 * 109.47001 * 240.00107 * 2 1 3 5 5 O 1.42900 * 109.47397 * 305.00398 * 4 2 1 6 6 N 1.46496 * 109.47035 * 120.00632 * 2 1 3 7 7 C 1.34778 * 119.99599 * 274.99626 * 6 2 1 8 8 O 1.21781 * 120.00272 * 0.02562 * 7 6 2 9 9 C 1.41498 * 120.00140 * 179.97438 * 7 6 2 10 10 C 1.35446 * 120.00268 * 180.02562 * 9 7 6 11 11 C 1.46382 * 120.00222 * 180.02562 * 10 9 7 12 12 C 1.36671 * 126.78456 * 0.02638 * 11 10 9 13 13 N 1.35600 * 109.69744 * 179.97438 * 12 11 10 14 14 C 1.46495 * 124.78236 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47303 * 264.95758 * 14 13 12 16 16 H 1.08003 * 120.00322 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00640 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99365 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00628 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47184 * 89.99642 * 19 17 15 21 21 H 1.48498 * 109.47545 * 210.00097 * 19 17 15 22 22 H 1.48498 * 109.47003 * 330.00371 * 19 17 15 23 23 C 1.37996 * 110.43883 * 359.97438 * 13 12 11 24 24 C 1.39126 * 133.12884 * 179.70764 * 23 13 12 25 25 C 1.37781 * 119.92733 * 179.83429 * 24 23 13 26 26 C 1.38738 * 120.62991 * 0.49783 * 25 24 23 27 27 C 1.37776 * 120.29846 * 359.74825 * 26 25 24 28 28 C 1.39249 * 119.67741 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46872 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47105 * 300.00065 * 1 2 3 31 31 H 1.09004 * 109.47016 * 59.99511 * 1 2 3 32 32 H 1.09003 * 109.47162 * 65.00537 * 4 2 1 33 33 H 1.09004 * 109.47195 * 185.00005 * 4 2 1 34 34 H 0.96695 * 114.00463 * 180.02562 * 5 4 2 35 35 H 0.96995 * 120.00646 * 95.00190 * 6 2 1 36 36 H 1.08007 * 119.99665 * 0.02562 * 9 7 6 37 37 H 1.07999 * 120.00397 * 0.02562 * 10 9 7 38 38 H 1.08005 * 125.15017 * 359.94291 * 12 11 10 39 39 H 1.09001 * 109.47464 * 24.95764 * 14 13 12 40 40 H 1.09001 * 109.47688 * 144.95836 * 14 13 12 41 41 H 0.97004 * 119.99576 * 180.02562 * 18 17 15 42 42 H 1.07997 * 120.03578 * 0.32433 * 24 23 13 43 43 H 1.07999 * 119.68222 * 180.24222 * 25 24 23 44 44 H 1.08001 * 119.85134 * 179.72667 * 26 25 24 45 45 H 1.08000 * 120.16115 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.4702 -2.0303 -1.3096 6 7 2.0183 -0.6907 1.1961 7 6 2.1471 -0.0184 2.3571 8 8 1.8571 1.1631 2.4119 9 6 2.6182 -0.6856 3.5125 10 6 2.7471 -0.0101 4.6794 11 6 3.2350 -0.7001 5.8746 12 6 3.5986 -2.0142 5.9698 13 7 3.9981 -2.2872 7.2366 14 6 4.4579 -3.5973 7.7038 15 6 3.3043 -4.3430 8.3234 16 1 2.3262 -3.8868 8.3647 17 6 3.4970 -5.6080 8.8368 18 7 4.6880 -6.1637 8.7860 19 14 2.0668 -6.5326 9.6042 20 1 1.3762 -7.3313 8.5600 21 1 2.5753 -7.4388 10.6651 22 1 1.1118 -5.5626 10.1977 23 6 3.9116 -1.1568 8.0234 24 6 4.1900 -0.9071 9.3634 25 6 4.0044 0.3566 9.8802 26 6 3.5312 1.3855 9.0788 27 6 3.2449 1.1566 7.7506 28 6 3.4323 -0.1146 7.2141 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.7517 -0.1582 -2.1370 33 1 3.1264 -0.7995 -1.2057 34 1 1.7504 -2.5463 -2.0778 35 1 2.2490 -1.6318 1.1525 36 1 2.8750 -1.7335 3.4640 37 1 2.4899 1.0377 4.7281 38 1 3.5714 -2.7272 5.1591 39 1 4.8481 -4.1674 6.8606 40 1 5.2444 -3.4628 8.4464 41 1 4.8235 -7.0539 9.1468 42 1 4.5588 -1.7010 9.9959 43 1 4.2256 0.5470 10.9200 44 1 3.3861 2.3702 9.4980 45 1 2.8770 1.9593 7.1287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097204708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:20 Heat of formation + Delta-G solvation = -43.422999 kcal Electronic energy + Delta-G solvation = -26438.343816 eV Core-core repulsion = 22613.200560 eV Total energy + Delta-G solvation = -3825.143256 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.23088 -40.88685 -38.30917 -37.97438 -35.95105 -35.56442 -34.73964 -32.73872 -31.60127 -31.18096 -29.68306 -28.40043 -27.36849 -25.72613 -24.44318 -23.45571 -22.20542 -21.85178 -21.29328 -19.69027 -18.85957 -18.67601 -18.19613 -17.61941 -17.18722 -16.86209 -16.39601 -16.28666 -15.96638 -15.67162 -15.43822 -15.06547 -14.87189 -14.73647 -14.55558 -14.36404 -14.22587 -13.80740 -13.69245 -13.40140 -13.26140 -13.16384 -12.74001 -12.72374 -12.50831 -12.44573 -12.30706 -12.29671 -11.95658 -11.87223 -11.68786 -11.17292 -11.01527 -10.82761 -10.77188 -10.15177 -9.89226 -9.10829 -8.47660 -8.14217 -6.54731 -0.17086 0.43160 0.85443 1.35285 1.36956 1.47493 1.91042 2.10682 2.33144 2.40446 2.64351 2.93700 3.07961 3.40657 3.76199 3.83300 3.88479 3.96554 4.15543 4.16753 4.30281 4.36649 4.38011 4.43973 4.58877 4.60882 4.68275 4.72095 4.74454 4.85183 4.85900 4.89592 4.98235 4.99937 5.12913 5.33729 5.39900 5.50497 5.51062 5.63287 5.67861 5.74026 5.77283 5.85633 6.01596 6.32014 6.41453 6.61680 6.68063 6.94263 7.17854 7.36335 8.68879 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009754 B = 0.002941 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.870734 B = 9516.724519 C =11740.389178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.135 3.865 3 H 0.087 0.913 4 C 0.076 3.924 5 O -0.586 6.586 6 N -0.714 5.714 7 C 0.557 3.443 8 O -0.600 6.600 9 C -0.277 4.277 10 C 0.070 3.930 11 C -0.214 4.214 12 C 0.109 3.891 13 N -0.455 5.455 14 C 0.248 3.752 15 C -0.556 4.556 16 H 0.052 0.948 17 C 0.025 3.975 18 N -0.917 5.917 19 Si 0.966 3.034 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.273 1.273 23 C 0.064 3.936 24 C -0.134 4.134 25 C -0.108 4.108 26 C -0.138 4.138 27 C -0.091 4.091 28 C -0.105 4.105 29 H 0.060 0.940 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.400 0.600 35 H 0.412 0.588 36 H 0.138 0.862 37 H 0.127 0.873 38 H 0.189 0.811 39 H 0.042 0.958 40 H 0.026 0.974 41 H 0.273 0.727 42 H 0.107 0.893 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.846 10.464 -15.088 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.105 0.895 4 C -0.002 4.002 5 O -0.395 6.395 6 N -0.365 5.365 7 C 0.350 3.650 8 O -0.485 6.485 9 C -0.298 4.298 10 C 0.049 3.951 11 C -0.222 4.222 12 C -0.026 4.026 13 N -0.130 5.130 14 C 0.129 3.871 15 C -0.594 4.594 16 H 0.070 0.930 17 C -0.177 4.177 18 N -0.555 5.555 19 Si 0.790 3.210 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.198 1.198 23 C -0.041 4.041 24 C -0.155 4.155 25 C -0.127 4.127 26 C -0.157 4.157 27 C -0.109 4.109 28 C -0.109 4.109 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.250 0.750 35 H 0.249 0.751 36 H 0.156 0.844 37 H 0.144 0.856 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.044 0.956 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.168 0.832 44 H 0.174 0.826 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.080 10.948 -14.352 18.312 hybrid contribution -0.032 -1.663 0.099 1.667 sum -3.113 9.285 -14.253 17.293 Atomic orbital electron populations 1.22002 0.95114 1.02260 1.01736 1.21159 0.94920 0.96766 0.84097 0.89473 1.22393 0.97169 0.84355 0.96300 1.86445 1.73316 1.27446 1.52322 1.45884 1.66906 1.14562 1.09183 1.17169 0.77125 0.86215 0.84463 1.90763 1.53873 1.17639 1.86206 1.21623 1.13001 1.02019 0.93184 1.21502 0.86365 0.98287 0.88977 1.19029 1.16716 0.93146 0.93264 1.22620 0.96037 0.96545 0.87395 1.44532 1.50760 1.09564 1.08157 1.19364 0.95183 0.76825 0.95756 1.21477 0.95680 1.01407 1.40867 0.93006 1.25695 0.98664 0.97739 0.95556 1.70000 1.23103 1.16599 1.45790 0.85426 0.78812 0.78272 0.78474 1.19339 1.19994 1.19828 1.18703 1.04562 0.86722 0.94097 1.20352 1.04566 0.98662 0.91879 1.21102 0.99623 0.91070 1.00926 1.21239 1.01158 1.00164 0.93117 1.20717 0.99880 0.94345 0.96003 1.19357 1.04229 0.94263 0.93069 0.92090 0.94686 0.90192 0.90065 0.92033 0.74985 0.75129 0.84407 0.85561 0.79375 0.93952 0.95565 0.91790 0.87440 0.83224 0.82607 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.29 71.98 0.67 -2.35 16 2 C 0.14 2.55 2.98 44.99 0.13 2.69 16 3 H 0.09 1.83 7.58 -2.39 -0.02 1.81 16 4 C 0.08 0.87 6.79 71.98 0.49 1.36 16 5 O -0.59 -7.09 12.51 -148.98 -1.86 -8.95 16 6 N -0.71 -15.75 5.05 -451.58 -2.28 -18.03 16 7 C 0.56 16.04 7.52 85.04 0.64 16.68 16 8 O -0.60 -21.28 15.77 -4.61 -0.07 -21.35 16 9 C -0.28 -7.71 9.32 22.43 0.21 -7.50 16 10 C 0.07 2.17 9.68 23.75 0.23 2.40 16 11 C -0.21 -7.57 6.24 -19.08 -0.12 -7.68 16 12 C 0.11 4.03 10.65 83.74 0.89 4.92 16 13 N -0.45 -19.74 2.73 -518.94 -1.42 -21.16 16 14 C 0.25 12.19 5.71 85.63 0.49 12.67 16 15 C -0.56 -29.69 9.39 25.60 0.24 -29.45 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 17 C 0.02 1.31 5.46 84.65 0.46 1.77 16 18 N -0.92 -50.32 13.29 21.45 0.28 -50.04 16 19 Si 0.97 41.95 29.54 68.60 2.03 43.97 16 20 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 21 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 23 C 0.06 2.68 6.79 38.91 0.26 2.95 16 24 C -0.13 -5.15 9.97 22.37 0.22 -4.93 16 25 C -0.11 -3.25 10.01 22.28 0.22 -3.02 16 26 C -0.14 -3.75 10.03 22.28 0.22 -3.53 16 27 C -0.09 -2.80 10.09 22.40 0.23 -2.58 16 28 C -0.11 -3.92 6.36 -20.07 -0.13 -4.05 16 29 H 0.06 1.26 7.56 -2.39 -0.02 1.24 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.40 1.27 9.12 -74.06 -0.68 0.60 16 35 H 0.41 7.65 8.34 -92.71 -0.77 6.88 16 36 H 0.14 3.27 6.88 -2.91 -0.02 3.25 16 37 H 0.13 3.93 7.45 -2.91 -0.02 3.91 16 38 H 0.19 5.82 7.19 -2.91 -0.02 5.80 16 39 H 0.04 2.10 8.11 -2.39 -0.02 2.09 16 40 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 42 H 0.11 4.32 8.06 -2.91 -0.02 4.30 16 43 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 44 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 45 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -68.83 387.74 1.61 -67.22 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -0.43 Total: 27.99 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 5.37 Total: -19.65 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -3.41 Total: -89.22 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.94 Total: -30.30 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Total: -68.83 1.61 -67.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097204708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.793 kcal (2) G-P(sol) polarization free energy of solvation -68.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds