Wall clock time and date at job start Tue Mar 31 2020 15:30:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35977 * 117.00553 * 2 1 4 4 C 1.38698 * 120.00332 * 180.02562 * 3 2 1 5 5 C 1.38125 * 119.99861 * 180.02562 * 4 3 2 6 6 C 1.38701 * 120.00737 * 359.97438 * 5 4 3 7 7 O 1.35979 * 120.00751 * 179.97438 * 6 5 4 8 8 C 1.42893 * 117.00338 * 174.63814 * 7 6 5 9 9 H 1.09012 * 109.47105 * 325.96654 * 8 7 6 10 10 C 1.52995 * 109.47147 * 85.96636 * 8 7 6 11 11 C 1.52997 * 109.47277 * 205.96954 * 8 7 6 12 12 N 1.46508 * 109.47094 * 65.00236 * 11 8 7 13 13 C 1.39075 * 119.99789 * 180.02562 * 12 11 8 14 14 C 1.38751 * 119.66128 * 359.97438 * 13 12 11 15 15 C 1.40772 * 118.66731 * 180.02562 * 14 13 12 16 16 C 1.41560 * 120.99080 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99760 * 333.85029 * 16 15 14 18 18 C 1.40023 * 120.00318 * 153.85277 * 16 15 14 19 19 N 1.30746 * 119.99658 * 347.34141 * 18 16 15 20 20 Si 1.86799 * 119.99971 * 167.33415 * 18 16 15 21 21 H 1.48495 * 109.47016 * 60.00662 * 20 18 16 22 22 H 1.48503 * 109.46722 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47225 * 300.00166 * 20 18 16 24 24 C 1.41182 * 118.02086 * 359.97438 * 15 14 13 25 25 C 1.36558 * 119.14112 * 0.02562 * 24 15 14 26 26 N 1.32100 * 121.27162 * 359.97438 * 25 24 15 27 27 C 1.38704 * 119.99436 * 0.25793 * 6 5 4 28 28 C 1.38137 * 119.99740 * 359.46715 * 27 6 5 29 29 H 1.08992 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46783 * 300.00320 * 1 2 3 31 31 H 1.08999 * 109.46913 * 59.99714 * 1 2 3 32 32 H 1.07992 * 119.99996 * 359.97013 * 4 3 2 33 33 H 1.08003 * 119.99999 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47393 * 179.97438 * 10 8 7 35 35 H 1.08995 * 109.47440 * 300.00144 * 10 8 7 36 36 H 1.09004 * 109.47128 * 60.00658 * 10 8 7 37 37 H 1.08995 * 109.47577 * 304.99691 * 11 8 7 38 38 H 1.09000 * 109.47530 * 184.99486 * 11 8 7 39 39 H 0.96999 * 119.99999 * 359.97438 * 12 11 8 40 40 H 1.08001 * 120.66285 * 359.97438 * 14 13 12 41 41 H 0.97002 * 120.00157 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.43099 * 180.02562 * 24 15 14 43 43 H 1.08000 * 119.36490 * 180.02562 * 25 24 15 44 44 H 1.07999 * 120.00069 * 179.72625 * 27 6 5 45 45 H 1.08001 * 119.99763 * 180.27688 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2115 0.0000 4 6 3.4316 1.2840 -0.0005 5 6 4.0587 2.5147 0.0000 6 6 3.3034 3.6781 0.0005 7 8 3.9207 4.8897 0.0016 8 6 3.0859 6.0433 -0.1169 9 1 2.2342 5.8113 -0.7564 10 6 2.5858 6.4554 1.2690 11 6 3.8876 7.1920 -0.7321 12 7 4.2650 6.8441 -2.1044 13 6 5.0042 7.7391 -2.8703 14 6 5.3803 8.9596 -2.3281 15 6 6.1278 9.8498 -3.1221 16 6 6.5378 11.1076 -2.6183 17 1 5.9709 11.5855 -1.8330 18 6 7.6781 11.7321 -3.1381 19 7 8.5005 11.0608 -3.9012 20 14 8.0243 13.5243 -2.7413 21 1 8.1640 13.6879 -1.2720 22 1 9.2826 13.9449 -3.4085 23 1 6.9014 14.3650 -3.2284 24 6 6.4573 9.4504 -4.4355 25 6 6.0428 8.2285 -4.8828 26 7 5.3423 7.4172 -4.1107 27 6 1.9183 3.6056 0.0059 28 6 1.2911 2.3748 -0.0003 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0197 0.3783 -0.0005 33 1 5.1372 2.5712 0.0000 34 1 1.9493 7.3357 1.1788 35 1 2.0146 5.6371 1.7074 36 1 3.4375 6.6874 1.9085 37 1 4.7868 7.3652 -0.1409 38 1 3.2789 8.0961 -0.7409 39 1 3.9998 5.9893 -2.4784 40 1 5.1042 9.2217 -1.3174 41 1 9.2904 11.4935 -4.2616 42 1 7.0298 10.1027 -5.0783 43 1 6.2933 7.9191 -5.8867 44 1 1.3301 4.5113 0.0108 45 1 0.2126 2.3183 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156079708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:49 Heat of formation + Delta-G solvation = -17.534590 kcal Electronic energy + Delta-G solvation = -26473.498872 eV Core-core repulsion = 22649.478222 eV Total energy + Delta-G solvation = -3824.020650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.66590 -39.39746 -38.37480 -36.81734 -35.08029 -33.85598 -32.10058 -31.22966 -30.55587 -29.35701 -28.27194 -27.35325 -25.85135 -25.35083 -23.59565 -22.29588 -21.60660 -20.80780 -20.50437 -18.72214 -17.88841 -17.59097 -16.75465 -15.99403 -15.87618 -15.55041 -15.18949 -15.06175 -14.70342 -14.51969 -14.12417 -14.05780 -13.78385 -13.48861 -13.23662 -13.08096 -12.87195 -12.67686 -12.57477 -12.37211 -12.27769 -12.05166 -11.96281 -11.58329 -11.35355 -11.18693 -11.12226 -10.83590 -10.66636 -10.52585 -10.27490 -9.78423 -9.41593 -9.26213 -8.93294 -7.91614 -7.87952 -7.86651 -6.77649 -6.43159 -4.53806 1.06719 1.31175 2.83535 3.00791 3.04771 3.07378 3.09293 3.17049 3.38225 3.56783 3.89583 3.98058 4.49775 4.56222 4.68227 4.75799 4.78641 4.83558 4.91376 4.95989 5.01890 5.14164 5.24691 5.27230 5.47539 5.53769 5.64251 5.73856 5.83788 5.90875 5.94062 6.02460 6.08356 6.14961 6.20614 6.41559 6.77210 6.92123 6.96185 7.04397 7.10702 7.30677 7.40472 7.58130 7.85818 8.07714 8.11835 8.47395 8.72483 8.86382 8.92991 9.80307 10.17291 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.002111 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.412327 B =13261.902886 C =13786.734271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.083 3.917 4 C -0.110 4.110 5 C -0.112 4.112 6 C 0.104 3.896 7 O -0.300 6.300 8 C 0.073 3.927 9 H 0.077 0.923 10 C -0.176 4.176 11 C 0.147 3.853 12 N -0.742 5.742 13 C 0.398 3.602 14 C -0.334 4.334 15 C 0.156 3.844 16 C -0.457 4.457 17 H 0.078 0.922 18 C 0.077 3.923 19 N -0.789 5.789 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.242 4.242 25 C 0.115 3.885 26 N -0.622 5.622 27 C -0.173 4.173 28 C -0.168 4.168 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.390 0.610 40 H 0.097 0.903 41 H 0.282 0.718 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.133 0.867 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.449 -14.100 9.459 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.038 3.962 4 C -0.129 4.129 5 C -0.131 4.131 6 C 0.059 3.941 7 O -0.214 6.214 8 C 0.017 3.983 9 H 0.095 0.905 10 C -0.234 4.234 11 C 0.022 3.978 12 N -0.379 5.379 13 C 0.167 3.833 14 C -0.360 4.360 15 C 0.148 3.852 16 C -0.489 4.489 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.415 5.415 20 Si 0.737 3.263 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.188 1.188 24 C -0.266 4.266 25 C -0.035 4.035 26 N -0.345 5.345 27 C -0.192 4.192 28 C -0.186 4.186 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.157 0.843 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.224 0.776 40 H 0.115 0.885 41 H 0.093 0.907 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.150 0.850 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.193 -14.902 9.155 21.908 hybrid contribution -0.041 1.525 0.357 1.567 sum -13.234 -13.377 9.513 21.085 Atomic orbital electron populations 1.23013 0.78708 1.03753 1.01209 1.86063 1.21075 1.26828 1.89458 1.18886 0.92310 0.84136 1.00824 1.20224 0.91291 0.97874 1.03492 1.20308 1.00508 0.89018 1.03273 1.18952 0.90898 0.85981 0.98286 1.86243 1.35805 1.11623 1.87738 1.22742 0.93636 0.84623 0.97321 0.90540 1.22295 1.02451 1.02370 0.96307 1.21191 0.98844 0.94317 0.83484 1.43973 1.61884 1.19998 1.12072 1.17908 0.89598 0.87414 0.88388 1.21152 1.18026 0.96205 1.00663 1.17609 0.86241 0.91249 0.90128 1.19530 1.08759 1.02382 1.18206 0.90408 1.25952 0.95213 0.99866 0.93168 1.69781 1.09532 1.37190 1.24982 0.86305 0.78373 0.81983 0.79666 1.18974 1.20270 1.18812 1.21815 1.08564 0.98643 0.97592 1.21376 0.94117 0.91164 0.96807 1.66740 1.24352 1.37791 1.05627 1.21116 0.93579 0.98374 1.06116 1.21004 0.99856 0.91719 1.06057 0.88391 0.92861 0.92766 0.84600 0.84317 0.90542 0.91744 0.90872 0.91512 0.90784 0.77589 0.88508 0.90746 0.85775 0.86435 0.84979 0.85414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.24 10.50 -19.67 -0.21 -3.45 16 3 C 0.08 0.90 6.69 -39.24 -0.26 0.64 16 4 C -0.11 -1.20 9.98 -39.45 -0.39 -1.60 16 5 C -0.11 -1.33 9.98 -39.45 -0.39 -1.72 16 6 C 0.10 1.31 6.61 -39.24 -0.26 1.05 16 7 O -0.30 -4.15 9.74 -19.67 -0.19 -4.34 16 8 C 0.07 0.88 2.25 -26.74 -0.06 0.82 16 9 H 0.08 0.85 6.25 -51.92 -0.32 0.53 16 10 C -0.18 -1.67 9.20 37.16 0.34 -1.32 16 11 C 0.15 2.25 4.56 -4.04 -0.02 2.23 16 12 N -0.74 -14.19 5.68 -60.47 -0.34 -14.53 16 13 C 0.40 9.49 7.65 -154.98 -1.19 8.30 16 14 C -0.33 -8.38 9.12 -38.43 -0.35 -8.73 16 15 C 0.16 4.24 5.59 -106.56 -0.60 3.65 16 16 C -0.46 -12.13 9.13 -37.65 -0.34 -12.47 16 17 H 0.08 1.96 7.88 -52.49 -0.41 1.55 16 18 C 0.08 1.92 5.26 -17.35 -0.09 1.83 16 19 N -0.79 -20.38 10.83 55.55 0.60 -19.78 16 20 Si 0.91 18.48 29.58 -169.99 -5.03 13.46 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.24 -6.43 8.72 -39.07 -0.34 -6.77 16 25 C 0.11 2.87 11.10 -18.04 -0.20 2.67 16 26 N -0.62 -15.60 10.37 -12.82 -0.13 -15.74 16 27 C -0.17 -1.87 8.28 -39.45 -0.33 -2.20 16 28 C -0.17 -1.68 9.03 -39.45 -0.36 -2.04 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 32 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 33 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.56 7.01 -51.93 -0.36 0.19 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.10 7.93 -51.93 -0.41 0.68 16 38 H 0.07 1.07 7.93 -51.93 -0.41 0.66 16 39 H 0.39 7.18 8.60 -40.82 -0.35 6.83 16 40 H 0.10 2.25 6.71 -52.49 -0.35 1.90 16 41 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 42 H 0.12 3.35 6.20 -52.49 -0.33 3.03 16 43 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 44 H 0.13 1.22 5.45 -52.49 -0.29 0.94 16 45 H 0.13 0.98 6.29 -52.49 -0.33 0.65 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -30.97 373.45 -9.56 -40.53 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -6.04 Total: 12.71 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -3.85 Total: -14.50 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.13 Total: -50.04 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -0.40 Total: -7.79 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.97 -9.56 -40.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156079708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.995 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds