Wall clock time and date at job start Tue Mar 31 2020 15:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35977 * 117.00553 * 2 1 4 4 C 1.38698 * 120.00332 * 180.02562 * 3 2 1 5 5 C 1.38125 * 119.99861 * 180.02562 * 4 3 2 6 6 C 1.38701 * 120.00737 * 359.97438 * 5 4 3 7 7 O 1.35979 * 120.00751 * 179.97438 * 6 5 4 8 8 C 1.42893 * 117.00338 * 174.63814 * 7 6 5 9 9 H 1.09012 * 109.47105 * 325.96654 * 8 7 6 10 10 C 1.52995 * 109.47147 * 85.96636 * 8 7 6 11 11 C 1.52997 * 109.47277 * 205.96954 * 8 7 6 12 12 N 1.46508 * 109.47094 * 65.00236 * 11 8 7 13 13 C 1.39075 * 119.99789 * 180.02562 * 12 11 8 14 14 C 1.38751 * 119.66128 * 359.97438 * 13 12 11 15 15 C 1.40772 * 118.66731 * 180.02562 * 14 13 12 16 16 C 1.41560 * 120.99080 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99760 * 333.85029 * 16 15 14 18 18 C 1.40023 * 120.00318 * 153.85277 * 16 15 14 19 19 N 1.30746 * 119.99658 * 347.34141 * 18 16 15 20 20 Si 1.86799 * 119.99971 * 167.33415 * 18 16 15 21 21 H 1.48495 * 109.47016 * 60.00662 * 20 18 16 22 22 H 1.48503 * 109.46722 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47225 * 300.00166 * 20 18 16 24 24 C 1.41182 * 118.02086 * 359.97438 * 15 14 13 25 25 C 1.36558 * 119.14112 * 0.02562 * 24 15 14 26 26 N 1.32100 * 121.27162 * 359.97438 * 25 24 15 27 27 C 1.38704 * 119.99436 * 0.25793 * 6 5 4 28 28 C 1.38137 * 119.99740 * 359.46715 * 27 6 5 29 29 H 1.08992 * 109.47578 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46783 * 300.00320 * 1 2 3 31 31 H 1.08999 * 109.46913 * 59.99714 * 1 2 3 32 32 H 1.07992 * 119.99996 * 359.97013 * 4 3 2 33 33 H 1.08003 * 119.99999 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47393 * 179.97438 * 10 8 7 35 35 H 1.08995 * 109.47440 * 300.00144 * 10 8 7 36 36 H 1.09004 * 109.47128 * 60.00658 * 10 8 7 37 37 H 1.08995 * 109.47577 * 304.99691 * 11 8 7 38 38 H 1.09000 * 109.47530 * 184.99486 * 11 8 7 39 39 H 0.96999 * 119.99999 * 359.97438 * 12 11 8 40 40 H 1.08001 * 120.66285 * 359.97438 * 14 13 12 41 41 H 0.97002 * 120.00157 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.43099 * 180.02562 * 24 15 14 43 43 H 1.08000 * 119.36490 * 180.02562 * 25 24 15 44 44 H 1.07999 * 120.00069 * 179.72625 * 27 6 5 45 45 H 1.08001 * 119.99763 * 180.27688 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2115 0.0000 4 6 3.4316 1.2840 -0.0005 5 6 4.0587 2.5147 0.0000 6 6 3.3034 3.6781 0.0005 7 8 3.9207 4.8897 0.0016 8 6 3.0859 6.0433 -0.1169 9 1 2.2342 5.8113 -0.7564 10 6 2.5858 6.4554 1.2690 11 6 3.8876 7.1920 -0.7321 12 7 4.2650 6.8441 -2.1044 13 6 5.0042 7.7391 -2.8703 14 6 5.3803 8.9596 -2.3281 15 6 6.1278 9.8498 -3.1221 16 6 6.5378 11.1076 -2.6183 17 1 5.9709 11.5855 -1.8330 18 6 7.6781 11.7321 -3.1381 19 7 8.5005 11.0608 -3.9012 20 14 8.0243 13.5243 -2.7413 21 1 8.1640 13.6879 -1.2720 22 1 9.2826 13.9449 -3.4085 23 1 6.9014 14.3650 -3.2284 24 6 6.4573 9.4504 -4.4355 25 6 6.0428 8.2285 -4.8828 26 7 5.3423 7.4172 -4.1107 27 6 1.9183 3.6056 0.0059 28 6 1.2911 2.3748 -0.0003 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 4.0197 0.3783 -0.0005 33 1 5.1372 2.5712 0.0000 34 1 1.9493 7.3357 1.1788 35 1 2.0146 5.6371 1.7074 36 1 3.4375 6.6874 1.9085 37 1 4.7868 7.3652 -0.1409 38 1 3.2789 8.0961 -0.7409 39 1 3.9998 5.9893 -2.4784 40 1 5.1042 9.2217 -1.3174 41 1 9.2904 11.4935 -4.2616 42 1 7.0298 10.1027 -5.0783 43 1 6.2933 7.9191 -5.8867 44 1 1.3301 4.5113 0.0108 45 1 0.2126 2.3183 -0.0006 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156079708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:48 Heat of formation + Delta-G solvation = -35.323027 kcal Electronic energy + Delta-G solvation = -26474.270236 eV Core-core repulsion = 22649.478222 eV Total energy + Delta-G solvation = -3824.792014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.51939 -40.43645 -40.02560 -37.75414 -36.57901 -35.62910 -33.23844 -32.51668 -32.06934 -30.13266 -29.92841 -27.96915 -27.81130 -26.66131 -24.50247 -23.43466 -22.98826 -22.58418 -21.72840 -19.57510 -19.43443 -18.68172 -17.94225 -17.37375 -16.92138 -16.70807 -16.59044 -16.13416 -15.94688 -15.83078 -15.52065 -15.30610 -14.99002 -14.80537 -14.49077 -14.40122 -14.17975 -13.79509 -13.62609 -13.54140 -13.40623 -13.10007 -13.02906 -12.84661 -12.73209 -12.64556 -12.37476 -12.03927 -11.97469 -11.74667 -11.52617 -11.33015 -11.25117 -10.67012 -10.07993 -9.90453 -9.84424 -8.71301 -8.65942 -8.23736 -6.54856 0.25259 0.46355 0.98198 1.19918 1.39985 1.52443 1.62023 2.16828 2.20517 2.44391 2.48578 2.73698 2.83846 3.61004 3.76895 3.82219 3.83867 3.97044 4.05748 4.18196 4.23654 4.32012 4.41335 4.42020 4.51789 4.60017 4.66449 4.73501 4.78075 4.83079 4.89758 4.93225 5.00082 5.05998 5.09528 5.14668 5.23446 5.28407 5.32967 5.35202 5.59603 5.62121 5.91921 6.12485 6.35206 6.38168 6.55034 6.55757 6.87582 6.89775 7.02784 7.87652 8.31049 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.002111 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.412327 B =13261.902886 C =13786.734271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.077 3.923 4 C -0.119 4.119 5 C -0.127 4.127 6 C 0.082 3.918 7 O -0.323 6.323 8 C 0.080 3.920 9 H 0.090 0.910 10 C -0.170 4.170 11 C 0.143 3.857 12 N -0.732 5.732 13 C 0.397 3.603 14 C -0.352 4.352 15 C 0.127 3.873 16 C -0.488 4.488 17 H 0.081 0.919 18 C 0.035 3.965 19 N -0.818 5.818 20 Si 0.990 3.010 21 H -0.258 1.258 22 H -0.267 1.267 23 H -0.258 1.258 24 C -0.267 4.267 25 C 0.115 3.885 26 N -0.635 5.635 27 C -0.172 4.172 28 C -0.167 4.167 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.086 0.914 39 H 0.395 0.605 40 H 0.107 0.893 41 H 0.290 0.710 42 H 0.113 0.887 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.123 -14.063 10.416 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.251 6.251 3 C 0.032 3.968 4 C -0.138 4.138 5 C -0.145 4.145 6 C 0.038 3.962 7 O -0.238 6.238 8 C 0.024 3.976 9 H 0.107 0.893 10 C -0.228 4.228 11 C 0.018 3.982 12 N -0.367 5.367 13 C 0.165 3.835 14 C -0.378 4.378 15 C 0.119 3.881 16 C -0.518 4.518 17 H 0.099 0.901 18 C -0.182 4.182 19 N -0.444 5.444 20 Si 0.810 3.190 21 H -0.182 1.182 22 H -0.191 1.191 23 H -0.182 1.182 24 C -0.292 4.292 25 C -0.035 4.035 26 N -0.359 5.359 27 C -0.191 4.191 28 C -0.185 4.185 29 H 0.136 0.864 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.165 0.835 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.229 0.771 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.131 0.869 43 H 0.161 0.839 44 H 0.167 0.833 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.901 -14.908 10.143 23.392 hybrid contribution 0.421 1.350 0.069 1.416 sum -14.480 -13.558 10.212 22.311 Atomic orbital electron populations 1.23317 0.76678 1.05491 1.02125 1.86049 1.23237 1.26500 1.89289 1.19066 0.92467 0.84884 1.00352 1.20398 0.91935 0.97948 1.03487 1.20424 1.00662 0.89494 1.03935 1.19138 0.91840 0.85498 0.99767 1.86194 1.36950 1.12407 1.88268 1.22714 0.92896 0.83203 0.98810 0.89272 1.22268 1.02553 1.03567 0.94377 1.21413 0.98933 0.96514 0.81297 1.44094 1.60369 1.19232 1.13019 1.18185 0.89162 0.87832 0.88359 1.21281 1.18705 0.96691 1.01163 1.18036 0.87044 0.92248 0.90806 1.19837 1.09861 1.02960 1.19182 0.90072 1.26894 0.94317 1.04451 0.92521 1.69842 1.09989 1.39234 1.25340 0.85137 0.78553 0.75599 0.79709 1.18233 1.19118 1.18240 1.21788 1.10092 0.99532 0.97750 1.21752 0.93278 0.90607 0.97885 1.66884 1.24967 1.37819 1.06263 1.21309 0.92920 0.99420 1.05404 1.21295 1.01190 0.91035 1.04989 0.86438 0.91682 0.91995 0.83528 0.84550 0.88694 0.90492 0.91522 0.92926 0.89647 0.77073 0.87454 0.89882 0.86896 0.83947 0.83330 0.82831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.34 -6.25 10.50 -93.29 -0.98 -7.22 16 3 C 0.08 1.57 6.69 22.49 0.15 1.72 16 4 C -0.12 -2.55 9.98 22.35 0.22 -2.32 16 5 C -0.13 -3.00 9.98 22.35 0.22 -2.78 16 6 C 0.08 2.01 6.61 22.49 0.15 2.16 16 7 O -0.32 -8.79 9.74 -93.31 -0.91 -9.69 16 8 C 0.08 1.81 2.25 30.59 0.07 1.88 16 9 H 0.09 1.79 6.25 -2.38 -0.01 1.78 16 10 C -0.17 -2.86 9.20 71.98 0.66 -2.20 16 11 C 0.14 4.27 4.56 86.38 0.39 4.66 16 12 N -0.73 -27.74 5.68 -345.24 -1.96 -29.70 16 13 C 0.40 19.08 7.65 132.91 1.02 20.10 16 14 C -0.35 -17.99 9.12 23.01 0.21 -17.78 16 15 C 0.13 7.08 5.59 -21.12 -0.12 6.96 16 16 C -0.49 -26.34 9.13 23.52 0.21 -26.13 16 17 H 0.08 4.16 7.88 -2.91 -0.02 4.14 16 18 C 0.03 1.73 5.26 85.29 0.45 2.18 16 19 N -0.82 -42.82 10.83 21.84 0.24 -42.59 16 20 Si 0.99 37.52 29.58 68.60 2.03 39.55 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 23 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 24 C -0.27 -14.61 8.72 22.60 0.20 -14.41 16 25 C 0.11 5.80 11.10 84.26 0.94 6.73 16 26 N -0.64 -32.06 10.37 -194.47 -2.02 -34.07 16 27 C -0.17 -3.39 8.28 22.36 0.19 -3.21 16 28 C -0.17 -2.97 9.03 22.36 0.20 -2.77 16 29 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.50 7.66 -2.38 -0.02 0.48 16 31 H 0.06 0.52 7.66 -2.39 -0.02 0.50 16 32 H 0.15 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.13 7.01 -2.39 -0.02 1.11 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.74 7.93 -2.39 -0.02 1.72 16 38 H 0.09 2.38 7.93 -2.39 -0.02 2.36 16 39 H 0.39 14.33 8.60 -92.71 -0.80 13.53 16 40 H 0.11 5.08 6.71 -2.91 -0.02 5.06 16 41 H 0.29 13.67 8.29 -92.71 -0.77 12.90 16 42 H 0.11 6.32 6.20 -2.91 -0.02 6.30 16 43 H 0.14 6.28 8.06 -2.91 -0.02 6.25 16 44 H 0.15 2.33 5.45 -2.91 -0.02 2.32 16 45 H 0.15 1.84 6.29 -2.91 -0.02 1.83 16 Total: -1.00 -67.82 373.45 2.90 -64.92 By element: Atomic # 1 Polarization: 42.49 SS G_CDS: 0.23 Total: 42.72 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 6.27 Total: -23.90 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -3.74 Total: -106.36 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -1.89 Total: -16.92 kcal Atomic # 14 Polarization: 37.52 SS G_CDS: 2.03 Total: 39.55 kcal Total: -67.82 2.90 -64.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156079708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.593 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds