Wall clock time and date at job start Tue Mar 31 2020 16:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00393 * 2 1 4 4 H 1.09001 * 112.90276 * 341.25494 * 3 2 1 5 5 C 1.53779 * 113.61358 * 112.49867 * 3 2 1 6 6 C 1.53783 * 87.08019 * 89.11991 * 5 3 2 7 7 H 1.09005 * 113.68683 * 270.87204 * 6 5 3 8 8 C 1.52998 * 113.61877 * 139.97940 * 6 5 3 9 9 N 1.46509 * 109.46920 * 84.42507 * 8 6 5 10 10 C 1.34774 * 119.99579 * 175.04990 * 9 8 6 11 11 O 1.21666 * 120.00205 * 5.05014 * 10 9 8 12 12 C 1.46889 * 119.99664 * 185.05155 * 10 9 8 13 13 C 1.36122 * 125.43579 * 186.86052 * 12 10 9 14 14 C 1.41698 * 107.74914 * 179.97438 * 13 12 10 15 15 C 1.40022 * 133.35095 * 179.97438 * 14 13 12 16 16 C 1.36578 * 119.83094 * 180.02562 * 15 14 13 17 17 C 1.38848 * 120.60253 * 0.02562 * 16 15 14 18 18 C 1.37853 * 120.63160 * 0.17083 * 17 16 15 19 19 C 1.39085 * 119.81532 * 359.63059 * 18 17 16 20 20 N 1.37833 * 133.16859 * 180.02562 * 19 18 17 21 21 C 1.36891 * 125.61669 * 0.27952 * 20 19 18 22 22 H 1.08003 * 120.00250 * 222.15210 * 21 20 19 23 23 C 1.39011 * 119.99729 * 42.16309 * 21 20 19 24 24 N 1.31348 * 120.00300 * 8.09600 * 23 21 20 25 25 Si 1.86801 * 119.99988 * 188.09745 * 23 21 20 26 26 H 1.48500 * 109.47152 * 5.00313 * 25 23 21 27 27 H 1.48499 * 109.47273 * 124.99848 * 25 23 21 28 28 H 1.48499 * 109.47394 * 245.00075 * 25 23 21 29 29 C 1.53776 * 113.61424 * 209.99741 * 3 2 1 30 30 H 1.09003 * 109.46718 * 300.00455 * 1 2 3 31 31 H 1.09002 * 109.46745 * 59.99763 * 1 2 3 32 32 H 1.08994 * 109.47382 * 179.97438 * 1 2 3 33 33 H 1.08997 * 113.61941 * 334.56824 * 5 3 2 34 34 H 1.08997 * 113.61707 * 203.66379 * 5 3 2 35 35 H 1.09004 * 109.46910 * 324.43105 * 8 6 5 36 36 H 1.08995 * 109.47369 * 204.42567 * 8 6 5 37 37 H 0.96996 * 120.00071 * 355.04510 * 9 8 6 38 38 H 1.07999 * 126.12614 * 359.95653 * 13 12 10 39 39 H 1.07998 * 120.08138 * 0.02583 * 15 14 13 40 40 H 1.08001 * 119.69878 * 179.97438 * 16 15 14 41 41 H 1.08002 * 119.68946 * 179.97438 * 17 16 15 42 42 H 1.07999 * 120.09125 * 179.74427 * 18 17 16 43 43 H 0.97003 * 119.99879 * 184.98979 * 24 23 21 44 44 H 1.08999 * 113.60960 * 156.33195 * 29 3 2 45 45 H 1.08995 * 113.69165 * 25.44610 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3143 2.0797 -0.3227 5 6 2.7535 1.6488 1.3018 6 6 4.0062 1.0329 0.6566 7 1 4.1097 -0.0373 0.8355 8 6 5.2910 1.8110 0.9475 9 7 5.8370 1.3867 2.2392 10 6 7.0244 1.8664 2.6591 11 8 7.5994 2.7202 2.0105 12 6 7.6244 1.3582 3.8998 13 6 8.7449 1.8520 4.4945 14 6 8.9862 1.0877 5.6631 15 6 9.9746 1.1325 6.6538 16 6 9.9425 0.2393 7.6865 17 6 8.9374 -0.7156 7.7641 18 6 7.9557 -0.7821 6.7987 19 6 7.9650 0.1195 5.7397 20 7 7.1421 0.3017 4.6491 21 6 6.0296 -0.4405 4.3570 22 1 5.8381 -0.7494 3.3400 23 6 5.1461 -0.7965 5.3695 24 7 5.2891 -0.2915 6.5736 25 14 3.7554 -1.9930 5.0177 26 1 3.8836 -2.5068 3.6304 27 1 3.8245 -3.1272 5.9738 28 1 2.4528 -1.2964 5.1693 29 6 3.3756 1.3717 -0.7044 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 2.3927 1.0964 2.1693 34 1 2.8390 2.7196 1.4863 35 1 5.0703 2.8780 0.9792 36 1 6.0208 1.6140 0.1622 37 1 5.3438 0.7607 2.7921 38 1 9.3430 2.6780 4.1392 39 1 10.7604 1.8715 6.6014 40 1 10.7062 0.2756 8.4493 41 1 8.9265 -1.4150 8.5870 42 1 7.1804 -1.5310 6.8655 43 1 4.7186 -0.5941 7.2974 44 1 3.6312 2.3669 -1.0685 45 1 3.5183 0.5963 -1.4570 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881574486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:08 Heat of formation + Delta-G solvation = -0.646092 kcal Electronic energy + Delta-G solvation = -27988.185534 eV Core-core repulsion = 24164.897224 eV Total energy + Delta-G solvation = -3823.288310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.48221 -39.76067 -38.33951 -36.30292 -35.88704 -33.95058 -33.36572 -30.68669 -29.24459 -28.49787 -27.43794 -26.48145 -25.72325 -25.03177 -23.33657 -21.90836 -20.99244 -20.04158 -19.71817 -19.04275 -18.13645 -16.71211 -16.35631 -15.72933 -15.57338 -15.49741 -15.32787 -14.84091 -14.77812 -14.52526 -14.08214 -13.81685 -13.33026 -13.21297 -13.00413 -12.92848 -12.60628 -12.48858 -12.42528 -11.97068 -11.91490 -11.71686 -11.57642 -11.42831 -11.19419 -10.84563 -10.73709 -10.66202 -10.62096 -10.26539 -10.15148 -9.78065 -9.62781 -9.34035 -9.25378 -8.64020 -8.43789 -7.23147 -6.84806 -6.53407 -4.69533 1.86463 2.75890 2.92563 2.96354 2.99195 3.17916 3.51192 3.68751 3.83137 4.26601 4.52224 4.55390 4.59393 4.67890 4.76884 4.85650 5.09744 5.10627 5.20208 5.27242 5.45358 5.46626 5.62764 5.70831 5.75550 5.83520 5.86463 5.97206 5.98487 6.08852 6.18157 6.20737 6.40343 6.45453 6.60008 6.71416 6.83077 6.93630 7.08249 7.08539 7.12890 7.15016 7.47443 7.59681 7.66248 7.94294 7.96652 8.27051 8.31396 8.69376 9.00217 9.26758 10.11313 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.003996 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.676041 B = 7005.448472 C = 8739.128738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.061 3.939 4 H 0.073 0.927 5 C -0.156 4.156 6 C -0.116 4.116 7 H 0.101 0.899 8 C 0.129 3.871 9 N -0.728 5.728 10 C 0.595 3.405 11 O -0.561 6.561 12 C -0.019 4.019 13 C -0.165 4.165 14 C -0.134 4.134 15 C -0.087 4.087 16 C -0.161 4.161 17 C -0.148 4.148 18 C -0.052 4.052 19 C 0.106 3.894 20 N -0.260 5.260 21 C -0.372 4.372 22 H 0.109 0.891 23 C 0.058 3.942 24 N -0.817 5.817 25 Si 0.922 3.078 26 H -0.259 1.259 27 H -0.271 1.271 28 H -0.271 1.271 29 C -0.130 4.130 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.417 0.583 38 H 0.132 0.868 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.115 0.885 43 H 0.283 0.717 44 H 0.095 0.905 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.599 -0.192 -7.413 10.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C 0.003 3.997 4 H 0.091 0.909 5 C -0.193 4.193 6 C -0.134 4.134 7 H 0.119 0.881 8 C 0.005 3.995 9 N -0.387 5.387 10 C 0.384 3.616 11 O -0.440 6.440 12 C -0.134 4.134 13 C -0.193 4.193 14 C -0.139 4.139 15 C -0.106 4.106 16 C -0.180 4.180 17 C -0.169 4.169 18 C -0.072 4.072 19 C -0.009 4.009 20 N 0.076 4.924 21 C -0.500 4.500 22 H 0.126 0.874 23 C -0.156 4.156 24 N -0.445 5.445 25 Si 0.745 3.255 26 H -0.182 1.182 27 H -0.196 1.196 28 H -0.196 1.196 29 C -0.168 4.168 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.262 0.738 38 H 0.150 0.850 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.133 0.867 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.608 0.086 -7.825 10.914 hybrid contribution -1.247 -0.610 0.422 1.451 sum -8.855 -0.524 -7.403 11.554 Atomic orbital electron populations 1.22801 0.81099 1.02740 0.99899 1.87901 1.19546 1.26640 1.94588 1.23082 0.94343 0.84983 0.97276 0.90919 1.23560 0.96326 1.01569 0.97878 1.22723 0.93280 1.00971 0.96457 0.88117 1.21260 0.94006 0.98076 0.86185 1.46634 1.21702 1.49323 1.21080 1.17274 0.80250 0.80737 0.83298 1.90706 1.63455 1.32774 1.57086 1.20104 1.00699 0.95130 0.97489 1.20380 0.99149 1.03155 0.96613 1.18037 0.98078 1.00103 0.97656 1.20051 0.97443 0.98882 0.94176 1.20264 1.00034 0.98404 0.99280 1.20581 0.96633 1.00493 0.99171 1.20113 0.96821 0.98162 0.92093 1.18210 0.90935 0.98956 0.92842 1.39948 1.17071 1.19435 1.15995 1.19638 0.99620 1.33860 0.96858 0.87358 1.25659 0.98174 0.96630 0.95143 1.69965 1.37551 1.35819 1.01188 0.85932 0.79942 0.79703 0.79913 1.18217 1.19565 1.19641 1.23166 0.94048 1.02718 0.96822 0.93947 0.94104 0.89648 0.90507 0.88997 0.92079 0.91694 0.73846 0.85045 0.87792 0.87968 0.87748 0.86682 0.90635 0.88671 0.90374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.85 101.05 1.10 1.38 16 2 O -0.37 -4.56 10.63 -35.23 -0.37 -4.94 16 3 C 0.06 0.67 4.37 -25.92 -0.11 0.56 16 4 H 0.07 0.65 7.87 -51.93 -0.41 0.24 16 5 C -0.16 -1.95 7.46 -25.92 -0.19 -2.14 16 6 C -0.12 -1.54 3.69 -89.81 -0.33 -1.87 16 7 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 8 C 0.13 2.02 5.49 -4.04 -0.02 2.00 16 9 N -0.73 -14.25 5.32 -61.55 -0.33 -14.58 16 10 C 0.60 13.62 7.76 -12.76 -0.10 13.53 16 11 O -0.56 -13.56 16.86 5.22 0.09 -13.47 16 12 C -0.02 -0.48 6.76 -82.25 -0.56 -1.03 16 13 C -0.17 -3.93 10.55 -39.02 -0.41 -4.34 16 14 C -0.13 -3.20 6.16 -106.89 -0.66 -3.86 16 15 C -0.09 -1.80 10.06 -39.51 -0.40 -2.20 16 16 C -0.16 -3.13 9.97 -39.96 -0.40 -3.53 16 17 C -0.15 -3.03 10.02 -39.50 -0.40 -3.43 16 18 C -0.05 -1.22 8.49 -39.41 -0.33 -1.56 16 19 C 0.11 2.65 6.04 -83.83 -0.51 2.15 16 20 N -0.26 -6.55 2.82 -56.08 -0.16 -6.71 16 21 C -0.37 -8.87 7.69 -15.01 -0.12 -8.99 16 22 H 0.11 2.44 6.45 -52.48 -0.34 2.10 16 23 C 0.06 1.33 4.78 -17.47 -0.08 1.25 16 24 N -0.82 -20.05 10.47 55.50 0.58 -19.46 16 25 Si 0.92 17.61 29.56 -169.99 -5.03 12.59 16 26 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 27 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 28 H -0.27 -5.17 7.11 56.52 0.40 -4.76 16 29 C -0.13 -1.38 7.47 -25.92 -0.19 -1.57 16 30 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.07 7.94 -51.93 -0.41 0.66 16 35 H 0.06 0.94 7.90 -51.93 -0.41 0.53 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.42 8.34 4.60 -40.82 -0.19 8.15 16 38 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 39 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 40 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.12 2.73 6.51 -52.49 -0.34 2.39 16 43 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 44 H 0.09 0.86 8.10 -51.93 -0.42 0.44 16 45 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 371.51 15.07 5.60 5.60 Total: -1.00 -29.06 371.51 -9.64 -38.70 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -6.31 Total: 15.94 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -3.72 Total: -13.66 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.10 Total: -40.75 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.29 Total: -18.41 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.59 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.06 -9.64 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881574486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.054 kcal (2) G-P(sol) polarization free energy of solvation -29.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds