Wall clock time and date at job start Tue Mar 31 2020 15:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 O 1.42905 * 109.46536 * 183.82275 * 3 2 1 5 5 C 1.35714 * 116.99245 * 179.97438 * 4 3 2 6 6 C 1.38996 * 119.90711 * 179.97438 * 5 4 3 7 7 C 1.37701 * 120.08768 * 179.97438 * 6 5 4 8 8 C 1.39729 * 119.91211 * 0.02562 * 7 6 5 9 9 C 1.47610 * 120.09208 * 179.97438 * 8 7 6 10 10 O 1.21576 * 120.00128 * 221.78817 * 9 8 7 11 11 N 1.34774 * 119.99242 * 41.77848 * 9 8 7 12 12 C 1.46491 * 120.00610 * 355.85124 * 11 9 8 13 13 C 1.46507 * 119.99652 * 175.84637 * 11 9 8 14 14 H 1.09001 * 110.63920 * 1.69354 * 13 11 9 15 15 C 1.55155 * 110.87276 * 124.93794 * 13 11 9 16 16 C 1.55126 * 101.48410 * 82.76801 * 15 13 11 17 17 N 1.47423 * 104.72467 * 37.29434 * 16 15 13 18 18 C 1.36935 * 125.64856 * 155.81133 * 17 16 15 19 19 H 1.08002 * 120.00145 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00114 * 359.70030 * 18 17 16 21 21 N 1.31619 * 119.99810 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99889 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47290 * 59.99642 * 22 20 18 24 24 H 1.48499 * 109.46855 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.47045 * 299.99562 * 22 20 18 26 26 C 1.47023 * 108.70320 * 335.55399 * 17 16 15 27 27 C 1.39732 * 119.82560 * 0.27795 * 8 7 6 28 28 C 1.37709 * 119.90526 * 359.41735 * 27 8 7 29 29 H 4.38442 * 5.44417 * 179.97438 * 4 1 2 30 30 H 1.09002 * 109.46867 * 63.82632 * 3 2 1 31 31 H 1.08997 * 109.47225 * 303.82484 * 3 2 1 32 32 H 1.08003 * 119.95719 * 0.02837 * 6 5 4 33 33 H 1.08001 * 120.04942 * 180.02562 * 7 6 5 34 34 H 1.09001 * 109.47426 * 270.85226 * 12 11 9 35 35 H 1.08996 * 109.47350 * 30.85014 * 12 11 9 36 36 H 1.09000 * 109.47633 * 150.85102 * 12 11 9 37 37 H 1.08994 * 111.00739 * 201.00961 * 15 13 11 38 38 H 1.09004 * 111.00484 * 324.85884 * 15 13 11 39 39 H 1.09001 * 110.49994 * 278.45136 * 16 15 13 40 40 H 1.08999 * 110.34353 * 156.05961 * 16 15 13 41 41 H 0.97000 * 119.99486 * 180.02562 * 21 20 18 42 42 H 1.09001 * 109.88021 * 120.70065 * 26 17 16 43 43 H 1.08994 * 109.88227 * 241.86929 * 26 17 16 44 44 H 1.08002 * 120.05125 * 179.72472 * 27 8 7 45 45 H 1.08000 * 119.95426 * 180.32274 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1216 1.3452 0.0898 5 6 4.4670 1.5232 0.1022 6 6 4.9956 2.8059 0.1874 7 6 6.3601 2.9907 0.2008 8 6 7.2136 1.8867 0.1281 9 6 8.6769 2.0802 0.1415 10 8 9.3830 1.4298 -0.6044 11 7 9.2300 2.9782 0.9807 12 6 8.3741 3.8263 1.8138 13 6 10.6873 3.1061 1.0596 14 1 11.1712 2.4274 0.3573 15 6 11.1286 4.5707 0.8001 16 6 10.9277 5.2066 2.2008 17 7 11.3320 4.1547 3.1513 18 6 11.7701 4.3619 4.4320 19 1 12.0435 3.5208 5.0519 20 6 11.8683 5.6532 4.9317 21 7 11.5407 6.6786 4.1742 22 14 12.4652 5.9357 6.6790 23 1 13.8375 5.3881 6.8279 24 1 12.4800 7.3923 6.9676 25 1 11.5532 5.2514 7.6304 26 6 11.1810 2.8460 2.4985 27 6 6.6782 0.5993 0.0361 28 6 5.3125 0.4225 0.0297 29 1 -1.0502 -0.0005 -0.0002 30 1 3.0095 -0.4525 -0.9223 31 1 3.0096 -0.5712 0.8537 32 1 4.3353 3.6587 0.2440 33 1 6.7702 3.9876 0.2674 34 1 8.1275 4.7387 1.2707 35 1 7.4573 3.2895 2.0574 36 1 8.9006 4.0821 2.7333 37 1 12.1735 4.6155 0.4933 38 1 10.4851 5.0475 0.0606 39 1 9.8818 5.4733 2.3525 40 1 11.5640 6.0844 2.3132 41 1 11.6097 7.5810 4.5233 42 1 12.1415 2.3313 2.4735 43 1 10.4497 2.2447 3.0383 44 1 7.3345 -0.2563 -0.0248 45 1 4.8979 -0.5726 -0.0361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033477421.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:54 Heat of formation + Delta-G solvation = 63.436325 kcal Electronic energy + Delta-G solvation = -27275.312423 eV Core-core repulsion = 23454.802936 eV Total energy + Delta-G solvation = -3820.509488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.75285 -39.80448 -37.85728 -37.00226 -34.47783 -33.88444 -32.25049 -31.33936 -30.42949 -29.11078 -28.01020 -27.91232 -26.19898 -24.53829 -23.33957 -22.85677 -20.77312 -20.16355 -19.04411 -18.87171 -18.49348 -17.28452 -16.94516 -16.46650 -16.29562 -16.12106 -15.10127 -14.93753 -14.72367 -14.43734 -14.20484 -13.78755 -13.64475 -13.38119 -13.25823 -13.10205 -12.72716 -12.34664 -12.19881 -12.06500 -11.80121 -11.59492 -11.57879 -11.34718 -11.08156 -10.91196 -10.89044 -10.81487 -10.62851 -10.32133 -10.16214 -9.87855 -9.57726 -9.49703 -9.23200 -8.67788 -8.47701 -8.24171 -6.87355 -5.68447 -3.10647 0.87043 1.12676 1.82356 2.27397 2.84357 3.17399 3.23699 3.38766 3.43437 3.44264 3.65188 3.89290 4.45262 4.46633 4.57686 4.64564 4.69811 4.75945 5.04849 5.17189 5.32699 5.35638 5.41816 5.44476 5.45377 5.56554 5.70393 5.75100 5.82912 5.87462 5.95910 6.03588 6.20881 6.24017 6.30484 6.36124 6.40898 6.56116 6.59367 6.70800 6.98277 7.02739 7.04586 7.44070 7.59306 7.69843 7.82455 8.32524 8.37520 9.18660 9.79057 10.43462 11.34753 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018103 B = 0.002470 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.310769 B =11331.091317 C =12174.275733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.201 4.201 3 C 0.171 3.829 4 O -0.308 6.308 5 C 0.146 3.854 6 C -0.155 4.155 7 C -0.048 4.048 8 C -0.158 4.158 9 C 0.558 3.442 10 O -0.548 6.548 11 N -0.586 5.586 12 C 0.063 3.937 13 C 0.125 3.875 14 H 0.100 0.900 15 C -0.154 4.154 16 C 0.144 3.856 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.076 0.924 20 C -0.010 4.010 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.286 1.286 26 C 0.127 3.873 27 C -0.025 4.025 28 C -0.218 4.218 29 H 0.225 0.775 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.022 0.978 40 H 0.107 0.893 41 H 0.253 0.747 42 H 0.033 0.967 43 H 0.027 0.973 44 H 0.134 0.866 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.999 -10.629 -9.479 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.202 4.202 3 C 0.097 3.903 4 O -0.222 6.222 5 C 0.101 3.899 6 C -0.174 4.174 7 C -0.066 4.066 8 C -0.161 4.161 9 C 0.347 3.653 10 O -0.427 6.427 11 N -0.317 5.317 12 C -0.079 4.079 13 C 0.022 3.978 14 H 0.118 0.882 15 C -0.194 4.194 16 C 0.019 3.981 17 N -0.329 5.329 18 C -0.351 4.351 19 H 0.094 0.906 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C 0.000 4.000 27 C -0.044 4.044 28 C -0.236 4.236 29 H 0.242 0.758 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.122 0.878 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.040 0.960 40 H 0.124 0.876 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.152 0.848 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -17.711 -10.635 -9.687 22.817 hybrid contribution 0.050 -0.028 0.980 0.982 sum -17.661 -10.663 -8.707 22.392 Atomic orbital electron populations 1.25046 0.95891 0.96292 1.00188 1.22258 0.93537 1.03103 1.01261 1.19310 0.84999 0.82986 1.02983 1.86071 1.19602 1.28331 1.88186 1.19156 0.81479 0.94394 0.94919 1.20362 0.94998 0.94891 1.07141 1.21445 0.91994 0.99233 0.93949 1.19865 0.93418 0.94427 1.08436 1.18243 0.87272 0.79648 0.80148 1.90746 1.63143 1.48041 1.40798 1.47715 1.07232 1.36849 1.39900 1.22382 0.94977 0.93493 0.97090 1.22171 0.78505 0.98870 0.98296 0.88183 1.23386 1.00644 0.94586 1.00769 1.22191 0.99075 0.93820 0.82978 1.44536 1.77110 0.99695 1.11576 1.19022 1.36248 0.92415 0.87388 0.90579 1.24773 1.01819 0.95429 0.98544 1.69777 1.54399 0.97936 1.34941 0.86153 0.78623 0.76825 0.83887 1.21199 1.21600 1.21250 1.21644 0.97592 0.90124 0.90634 1.20944 0.94167 0.96330 0.92984 1.21149 0.94001 0.98127 1.10344 0.75825 0.89272 0.89227 0.84478 0.83867 0.92600 0.91500 0.87832 0.90943 0.92051 0.96044 0.87571 0.93673 0.94871 0.95537 0.84773 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 19.25 29.55 0.57 -0.47 16 2 C -0.20 -1.66 13.73 -37.12 -0.51 -2.17 16 3 C 0.17 1.27 5.21 34.37 0.18 1.45 16 4 O -0.31 -3.16 10.08 -18.85 -0.19 -3.35 16 5 C 0.15 1.54 6.69 -39.02 -0.26 1.28 16 6 C -0.16 -1.66 9.97 -39.50 -0.39 -2.05 16 7 C -0.05 -0.56 7.53 -39.22 -0.30 -0.85 16 8 C -0.16 -2.15 5.14 -104.96 -0.54 -2.69 16 9 C 0.56 9.31 7.31 -12.44 -0.09 9.21 16 10 O -0.55 -10.68 16.32 5.30 0.09 -10.59 16 11 N -0.59 -9.87 2.83 -173.04 -0.49 -10.36 16 12 C 0.06 0.97 7.04 59.84 0.42 1.39 16 13 C 0.12 2.32 3.57 -66.09 -0.24 2.08 16 14 H 0.10 1.87 6.99 -51.93 -0.36 1.50 16 15 C -0.15 -2.92 6.55 -24.47 -0.16 -3.08 16 16 C 0.14 3.29 5.03 -2.41 -0.01 3.28 16 17 N -0.60 -14.76 2.98 -169.94 -0.51 -15.26 16 18 C -0.22 -6.00 10.27 -15.06 -0.15 -6.16 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.28 5.49 -17.43 -0.10 -0.37 16 21 N -0.92 -25.88 10.08 55.49 0.56 -25.32 16 22 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 26 C 0.13 2.65 6.25 -3.06 -0.02 2.63 16 27 C -0.03 -0.30 9.64 -39.22 -0.38 -0.68 16 28 C -0.22 -2.13 9.01 -39.50 -0.36 -2.49 16 29 H 0.23 0.63 7.80 -54.08 -0.42 0.20 16 30 H 0.09 0.51 7.65 -51.93 -0.40 0.11 16 31 H 0.09 0.52 7.65 -51.93 -0.40 0.12 16 32 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.14 1.54 5.69 -52.49 -0.30 1.25 16 34 H 0.06 0.78 7.00 -51.93 -0.36 0.41 16 35 H 0.07 0.90 5.69 -51.93 -0.30 0.60 16 36 H 0.10 1.96 5.13 -51.93 -0.27 1.69 16 37 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.50 5.54 -51.93 -0.29 0.21 16 40 H 0.11 2.79 5.85 -51.93 -0.30 2.49 16 41 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.03 0.57 8.04 -51.93 -0.42 0.15 16 44 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.13 0.91 6.28 -52.49 -0.33 0.58 16 LS Contribution 366.85 15.07 5.53 5.53 Total: -1.00 -32.09 366.85 -8.17 -40.26 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -5.80 Total: 2.18 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -2.33 Total: 0.31 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.44 Total: -50.94 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.10 Total: -13.93 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.09 -8.17 -40.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033477421.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.697 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds