Wall clock time and date at job start Tue Mar 31 2020 15:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38181 * 126.46099 * 53.70770 * 3 2 1 5 5 N 1.34427 * 108.38714 * 179.72723 * 4 3 2 6 6 H 0.96992 * 125.40432 * 180.26035 * 5 4 3 7 7 C 1.37745 * 109.18649 * 0.43742 * 5 4 3 8 8 C 1.46787 * 125.84790 * 179.82173 * 7 5 4 9 9 O 1.21688 * 119.99929 * 187.84269 * 8 7 5 10 10 N 1.34778 * 120.00203 * 7.84538 * 8 7 5 11 11 C 1.48660 * 125.77926 * 358.25041 * 10 8 7 12 12 C 1.53066 * 103.44067 * 155.59060 * 11 10 8 13 13 H 1.08999 * 110.55354 * 284.33375 * 12 11 10 14 14 C 1.51307 * 117.09273 * 156.26018 * 12 11 10 15 15 C 1.53810 * 107.43147 * 184.11161 * 14 12 11 16 16 C 1.52520 * 111.70793 * 57.28996 * 15 14 12 17 17 C 1.53847 * 111.66009 * 305.95507 * 16 15 14 18 18 H 1.08999 * 109.93922 * 176.58304 * 17 16 15 19 19 N 1.46496 * 110.01161 * 297.77825 * 17 16 15 20 20 C 1.36943 * 119.99885 * 272.63945 * 19 17 16 21 21 H 1.08002 * 119.99919 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99675 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00338 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99741 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46944 * 119.99676 * 24 22 20 27 27 H 1.48498 * 109.47102 * 239.99694 * 24 22 20 28 28 C 1.51445 * 107.03935 * 57.19942 * 17 16 15 29 29 H 1.08994 * 109.87072 * 54.69382 * 28 17 16 30 30 C 1.48242 * 125.78734 * 178.21077 * 10 8 7 31 31 C 1.36411 * 108.30230 * 359.56104 * 7 5 4 32 32 H 1.08006 * 125.80329 * 0.02562 * 4 3 2 33 33 H 1.09005 * 110.62748 * 274.07346 * 11 10 8 34 34 H 1.08998 * 110.62965 * 37.10069 * 11 10 8 35 35 H 1.08997 * 109.94366 * 64.48144 * 14 12 11 36 36 H 1.09010 * 109.60434 * 303.54358 * 14 12 11 37 37 H 1.08998 * 109.03295 * 296.71246 * 15 14 12 38 38 H 1.09000 * 109.03127 * 177.86009 * 15 14 12 39 39 H 1.08997 * 109.04629 * 185.39575 * 16 15 14 40 40 H 1.09001 * 109.04568 * 66.51803 * 16 15 14 41 41 H 0.97003 * 120.00161 * 92.63056 * 19 17 16 42 42 H 0.97005 * 120.00235 * 180.02562 * 23 22 20 43 43 H 1.09002 * 110.16858 * 295.95219 * 30 10 8 44 44 H 1.09005 * 110.17245 * 57.67480 * 30 10 8 45 45 H 1.08004 * 126.48447 * 180.24670 * 31 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3895 -0.6568 -0.8957 5 7 4.6673 -0.4045 -0.5632 6 1 5.4469 -0.7418 -1.0314 7 6 4.6937 0.4059 0.5503 8 6 5.8998 0.9015 1.2244 9 8 5.8052 1.4938 2.2832 10 7 7.1120 0.7008 0.6706 11 6 7.3791 -0.0343 -0.5937 12 6 8.7124 0.5480 -1.0690 13 1 8.5667 1.5415 -1.4931 14 6 9.5498 -0.3108 -1.9913 15 6 10.8708 0.4357 -2.2430 16 6 11.6035 0.7406 -0.9405 17 6 10.7036 1.4940 0.0542 18 1 11.2335 1.6438 0.9949 19 7 10.3084 2.7878 -0.5078 20 6 11.1093 3.8845 -0.3310 21 1 12.0320 3.7956 0.2232 22 6 10.7345 5.1106 -0.8631 23 7 9.6098 5.2190 -1.5380 24 14 11.8266 6.6067 -0.6213 25 1 13.0246 6.2227 0.1677 26 1 12.2515 7.1285 -1.9451 27 1 11.0715 7.6583 0.1062 28 6 9.4780 0.6343 0.2830 29 1 9.7796 -0.3631 0.6030 30 6 8.4049 1.1762 1.2184 31 6 3.4071 0.6737 0.9159 32 1 3.0607 -1.2655 -1.7251 33 1 7.4730 -1.1036 -0.4037 34 1 6.5933 0.1594 -1.3239 35 1 9.0246 -0.4656 -2.9339 36 1 9.7500 -1.2710 -1.5156 37 1 10.6573 1.3721 -2.7584 38 1 11.5113 -0.1788 -2.8757 39 1 12.4798 1.3506 -1.1597 40 1 11.9282 -0.1961 -0.4874 41 1 9.4796 2.8677 -1.0054 42 1 9.3481 6.0757 -1.9102 43 1 8.4306 2.2658 1.2289 44 1 8.5518 0.7875 2.2261 45 1 3.0898 1.2845 1.7482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992659708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:13 Heat of formation + Delta-G solvation = 66.396337 kcal Electronic energy + Delta-G solvation = -28081.926088 eV Core-core repulsion = 24293.837707 eV Total energy + Delta-G solvation = -3788.088381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92928 -40.30602 -38.43544 -36.53462 -35.71071 -33.68888 -32.07411 -31.49602 -30.86982 -29.69375 -29.03487 -27.03951 -25.16894 -23.54236 -23.19710 -22.17348 -21.19784 -20.80347 -20.47704 -18.85471 -18.26384 -17.33371 -16.78755 -16.09209 -15.99107 -15.48745 -14.95786 -14.78500 -14.58911 -14.22221 -14.04550 -13.89384 -13.73504 -13.52737 -13.24690 -13.22009 -12.97187 -12.87894 -12.69424 -12.31874 -12.19650 -12.07157 -11.63733 -11.54507 -11.43150 -10.92613 -10.84438 -10.63154 -10.33343 -10.17705 -10.09433 -10.05715 -9.61652 -9.57730 -9.40325 -8.94733 -8.80526 -8.52292 -7.02999 -5.83162 -3.11746 1.18855 1.56527 2.48400 2.70138 2.84553 3.20026 3.39922 3.46165 3.48261 3.50591 3.94228 4.27011 4.37491 4.54515 4.56203 4.73419 4.82059 4.97654 5.01479 5.10447 5.31121 5.38349 5.43261 5.52455 5.58868 5.62842 5.65407 5.70396 5.80870 5.84813 5.94336 6.04855 6.06797 6.16350 6.20753 6.28573 6.34948 6.41810 6.54502 6.61836 6.70833 6.83693 6.84404 6.91824 7.43613 7.48124 7.66395 8.09428 8.35477 9.47406 10.02625 10.36585 11.39279 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.003243 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.886096 B = 8632.114498 C = 9618.255035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.293 3.707 3 C -0.135 4.135 4 C 0.088 3.912 5 N -0.527 5.527 6 H 0.427 0.573 7 C -0.035 4.035 8 C 0.600 3.400 9 O -0.524 6.524 10 N -0.616 5.616 11 C 0.094 3.906 12 C -0.107 4.107 13 H 0.103 0.897 14 C -0.097 4.097 15 C -0.110 4.110 16 C -0.133 4.133 17 C 0.189 3.811 18 H 0.055 0.945 19 N -0.717 5.717 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.011 4.011 23 N -0.931 5.931 24 Si 0.904 3.096 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.292 1.292 28 C -0.105 4.105 29 H 0.076 0.924 30 C 0.120 3.880 31 C -0.060 4.060 32 H 0.187 0.813 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.091 0.909 44 H 0.068 0.932 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.559 -17.456 -1.714 18.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.021 4.021 3 C -0.146 4.146 4 C -0.057 4.057 5 N -0.127 5.127 6 H 0.273 0.727 7 C -0.147 4.147 8 C 0.388 3.612 9 O -0.400 6.400 10 N -0.349 5.349 11 C -0.029 4.029 12 C -0.126 4.126 13 H 0.121 0.879 14 C -0.135 4.135 15 C -0.147 4.147 16 C -0.174 4.174 17 C 0.078 3.922 18 H 0.073 0.927 19 N -0.360 5.360 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.219 1.219 28 C -0.125 4.125 29 H 0.094 0.906 30 C -0.001 4.001 31 C -0.087 4.087 32 H 0.204 0.796 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.061 0.939 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.090 -16.994 -1.068 18.084 hybrid contribution 1.094 0.764 -0.490 1.421 sum -4.996 -16.230 -1.557 17.053 Atomic orbital electron populations 1.81268 1.11837 1.09819 1.08720 1.24653 0.91436 0.92877 0.93174 1.15392 0.84990 1.10934 1.03294 1.22298 0.82644 1.00762 0.99960 1.42701 1.08536 1.38089 1.23424 0.72677 1.20110 0.95455 1.05181 0.93933 1.16612 0.80559 0.79703 0.84292 1.90879 1.85327 1.42170 1.21580 1.49028 1.06458 1.55017 1.24431 1.22362 0.98610 0.96224 0.85708 1.22051 0.92109 1.01580 0.96882 0.87892 1.21222 0.96258 0.97763 0.98292 1.21370 0.94865 1.00348 0.98156 1.22180 0.99867 0.98871 0.96480 1.19870 0.91159 0.86112 0.95038 0.92661 1.42524 1.25785 1.03229 1.64500 1.19263 1.01936 0.87461 1.28398 0.91121 1.24704 0.97494 0.97719 1.00756 1.69644 1.23051 1.24479 1.40793 0.86168 0.79663 0.83437 0.77196 1.20593 1.21986 1.21894 1.22174 0.96022 1.00219 0.94116 0.90553 1.21744 0.80146 1.01671 0.96534 1.21040 0.89181 0.99333 0.99183 0.79581 0.90816 0.91122 0.92175 0.92206 0.90974 0.93243 0.91848 0.93918 0.77986 0.93557 0.89122 0.91372 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.89 18.54 41.84 0.78 -5.11 16 2 C 0.29 3.26 15.83 -22.47 -0.36 2.91 16 3 C -0.14 -1.27 5.97 -106.84 -0.64 -1.91 16 4 C 0.09 0.56 11.90 -16.44 -0.20 0.36 16 5 N -0.53 -3.87 5.32 -9.27 -0.05 -3.92 16 6 H 0.43 2.19 5.13 -40.82 -0.21 1.98 16 7 C -0.04 -0.40 6.80 -82.41 -0.56 -0.96 16 8 C 0.60 8.84 7.83 -12.80 -0.10 8.74 16 9 O -0.52 -9.73 17.22 5.20 0.09 -9.64 16 10 N -0.62 -8.21 3.38 -172.36 -0.58 -8.80 16 11 C 0.09 0.90 5.08 -2.81 -0.01 0.89 16 12 C -0.11 -1.30 2.35 -90.05 -0.21 -1.51 16 13 H 0.10 1.65 5.89 -51.93 -0.31 1.35 16 14 C -0.10 -1.02 5.70 -27.16 -0.15 -1.18 16 15 C -0.11 -1.48 5.66 -26.56 -0.15 -1.63 16 16 C -0.13 -1.98 5.54 -26.54 -0.15 -2.13 16 17 C 0.19 3.18 2.93 -68.28 -0.20 2.98 16 18 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 19 N -0.72 -15.68 4.26 -53.76 -0.23 -15.91 16 20 C -0.24 -6.12 9.95 -15.06 -0.15 -6.27 16 21 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -26.71 13.06 55.49 0.72 -25.99 16 24 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 C -0.11 -1.42 2.09 -90.36 -0.19 -1.61 16 29 H 0.08 0.88 7.95 -51.93 -0.41 0.47 16 30 C 0.12 1.82 6.56 -3.43 -0.02 1.80 16 31 C -0.06 -0.67 10.55 -39.09 -0.41 -1.08 16 32 H 0.19 0.45 8.06 -52.48 -0.42 0.03 16 33 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 34 H 0.07 0.55 5.59 -51.93 -0.29 0.26 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.53 8.00 -51.92 -0.42 0.12 16 37 H 0.07 1.20 8.01 -51.93 -0.42 0.79 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.38 8.95 5.53 -40.82 -0.23 8.72 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.09 1.74 7.71 -51.93 -0.40 1.33 16 44 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.16 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -32.50 365.87 -8.40 -40.90 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -6.02 Total: 7.28 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -3.60 Total: -0.99 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.64 Total: -59.73 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.50 -8.40 -40.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992659708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.297 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds