Wall clock time and date at job start Tue Mar 31 2020 15:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38181 * 126.46099 * 53.70770 * 3 2 1 5 5 N 1.34427 * 108.38714 * 179.72723 * 4 3 2 6 6 H 0.96992 * 125.40432 * 180.26035 * 5 4 3 7 7 C 1.37745 * 109.18649 * 0.43742 * 5 4 3 8 8 C 1.46787 * 125.84790 * 179.82173 * 7 5 4 9 9 O 1.21688 * 119.99929 * 187.84269 * 8 7 5 10 10 N 1.34778 * 120.00203 * 7.84538 * 8 7 5 11 11 C 1.48660 * 125.77926 * 358.25041 * 10 8 7 12 12 C 1.53066 * 103.44067 * 155.59060 * 11 10 8 13 13 H 1.08999 * 110.55354 * 284.33375 * 12 11 10 14 14 C 1.51307 * 117.09273 * 156.26018 * 12 11 10 15 15 C 1.53810 * 107.43147 * 184.11161 * 14 12 11 16 16 C 1.52520 * 111.70793 * 57.28996 * 15 14 12 17 17 C 1.53847 * 111.66009 * 305.95507 * 16 15 14 18 18 H 1.08999 * 109.93922 * 176.58304 * 17 16 15 19 19 N 1.46496 * 110.01161 * 297.77825 * 17 16 15 20 20 C 1.36943 * 119.99885 * 272.63945 * 19 17 16 21 21 H 1.08002 * 119.99919 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99675 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00338 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99741 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.46944 * 119.99676 * 24 22 20 27 27 H 1.48498 * 109.47102 * 239.99694 * 24 22 20 28 28 C 1.51445 * 107.03935 * 57.19942 * 17 16 15 29 29 H 1.08994 * 109.87072 * 54.69382 * 28 17 16 30 30 C 1.48242 * 125.78734 * 178.21077 * 10 8 7 31 31 C 1.36411 * 108.30230 * 359.56104 * 7 5 4 32 32 H 1.08006 * 125.80329 * 0.02562 * 4 3 2 33 33 H 1.09005 * 110.62748 * 274.07346 * 11 10 8 34 34 H 1.08998 * 110.62965 * 37.10069 * 11 10 8 35 35 H 1.08997 * 109.94366 * 64.48144 * 14 12 11 36 36 H 1.09010 * 109.60434 * 303.54358 * 14 12 11 37 37 H 1.08998 * 109.03295 * 296.71246 * 15 14 12 38 38 H 1.09000 * 109.03127 * 177.86009 * 15 14 12 39 39 H 1.08997 * 109.04629 * 185.39575 * 16 15 14 40 40 H 1.09001 * 109.04568 * 66.51803 * 16 15 14 41 41 H 0.97003 * 120.00161 * 92.63056 * 19 17 16 42 42 H 0.97005 * 120.00235 * 180.02562 * 23 22 20 43 43 H 1.09002 * 110.16858 * 295.95219 * 30 10 8 44 44 H 1.09005 * 110.17245 * 57.67480 * 30 10 8 45 45 H 1.08004 * 126.48447 * 180.24670 * 31 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3895 -0.6568 -0.8957 5 7 4.6673 -0.4045 -0.5632 6 1 5.4469 -0.7418 -1.0314 7 6 4.6937 0.4059 0.5503 8 6 5.8998 0.9015 1.2244 9 8 5.8052 1.4938 2.2832 10 7 7.1120 0.7008 0.6706 11 6 7.3791 -0.0343 -0.5937 12 6 8.7124 0.5480 -1.0690 13 1 8.5667 1.5415 -1.4931 14 6 9.5498 -0.3108 -1.9913 15 6 10.8708 0.4357 -2.2430 16 6 11.6035 0.7406 -0.9405 17 6 10.7036 1.4940 0.0542 18 1 11.2335 1.6438 0.9949 19 7 10.3084 2.7878 -0.5078 20 6 11.1093 3.8845 -0.3310 21 1 12.0320 3.7956 0.2232 22 6 10.7345 5.1106 -0.8631 23 7 9.6098 5.2190 -1.5380 24 14 11.8266 6.6067 -0.6213 25 1 13.0246 6.2227 0.1677 26 1 12.2515 7.1285 -1.9451 27 1 11.0715 7.6583 0.1062 28 6 9.4780 0.6343 0.2830 29 1 9.7796 -0.3631 0.6030 30 6 8.4049 1.1762 1.2184 31 6 3.4071 0.6737 0.9159 32 1 3.0607 -1.2655 -1.7251 33 1 7.4730 -1.1036 -0.4037 34 1 6.5933 0.1594 -1.3239 35 1 9.0246 -0.4656 -2.9339 36 1 9.7500 -1.2710 -1.5156 37 1 10.6573 1.3721 -2.7584 38 1 11.5113 -0.1788 -2.8757 39 1 12.4798 1.3506 -1.1597 40 1 11.9282 -0.1961 -0.4874 41 1 9.4796 2.8677 -1.0054 42 1 9.3481 6.0757 -1.9102 43 1 8.4306 2.2658 1.2289 44 1 8.5518 0.7875 2.2261 45 1 3.0898 1.2845 1.7482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992659708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:46:13 Heat of formation + Delta-G solvation = 45.136038 kcal Electronic energy + Delta-G solvation = -28082.848004 eV Core-core repulsion = 24293.837707 eV Total energy + Delta-G solvation = -3789.010296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.72227 -41.35795 -39.59814 -37.44800 -36.96302 -35.28675 -33.20467 -32.72158 -31.91158 -30.84725 -30.25214 -28.17053 -26.40089 -25.28787 -23.95387 -23.16410 -22.18896 -21.89459 -21.30640 -20.14365 -19.21842 -19.10130 -17.73404 -17.11895 -16.93518 -16.55527 -16.45225 -15.89994 -15.75624 -15.56696 -15.15627 -15.04108 -14.78656 -14.58418 -14.38521 -14.24703 -14.02844 -13.86561 -13.77906 -13.42049 -13.32218 -13.19666 -12.92943 -12.87530 -12.68020 -12.56904 -12.43231 -12.09284 -11.86071 -11.60879 -11.41950 -11.24786 -11.12290 -10.88568 -10.61400 -10.19467 -9.83209 -9.34339 -8.91657 -7.91852 -5.16159 0.40652 0.76277 1.44856 1.46879 1.54864 1.62143 1.84441 2.02903 2.20103 2.57334 2.67458 3.11370 3.30749 3.42373 3.51670 3.77378 3.82177 4.05653 4.14148 4.18136 4.24721 4.28779 4.37429 4.39169 4.55211 4.57389 4.64622 4.67380 4.76125 4.84561 4.89520 4.94046 5.01564 5.12087 5.14780 5.20527 5.35084 5.42555 5.44946 5.50913 5.56326 5.59522 5.65122 5.77078 6.28909 6.32154 6.41718 6.65002 6.99937 7.39319 8.19248 8.39784 9.31608 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013873 B = 0.003243 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.886096 B = 8632.114498 C = 9618.255035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.317 3.683 3 C -0.160 4.160 4 C 0.143 3.857 5 N -0.510 5.510 6 H 0.442 0.558 7 C -0.057 4.057 8 C 0.593 3.407 9 O -0.581 6.581 10 N -0.616 5.616 11 C 0.096 3.904 12 C -0.100 4.100 13 H 0.056 0.944 14 C -0.086 4.086 15 C -0.109 4.109 16 C -0.126 4.126 17 C 0.177 3.823 18 H 0.042 0.958 19 N -0.726 5.726 20 C -0.227 4.227 21 H 0.072 0.928 22 C -0.075 4.075 23 N -0.967 5.967 24 Si 0.960 3.040 25 H -0.267 1.267 26 H -0.296 1.296 27 H -0.302 1.302 28 C -0.098 4.098 29 H 0.117 0.883 30 C 0.122 3.878 31 C -0.066 4.066 32 H 0.242 0.758 33 H 0.123 0.877 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.079 0.921 41 H 0.375 0.625 42 H 0.246 0.754 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.252 -21.851 -3.437 22.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C 0.003 3.997 3 C -0.170 4.170 4 C -0.004 4.004 5 N -0.112 5.112 6 H 0.291 0.709 7 C -0.168 4.168 8 C 0.384 3.616 9 O -0.461 6.461 10 N -0.348 5.348 11 C -0.025 4.025 12 C -0.119 4.119 13 H 0.074 0.926 14 C -0.123 4.123 15 C -0.147 4.147 16 C -0.166 4.166 17 C 0.068 3.932 18 H 0.060 0.940 19 N -0.368 5.368 20 C -0.359 4.359 21 H 0.090 0.910 22 C -0.268 4.268 23 N -0.619 5.619 24 Si 0.791 3.209 25 H -0.192 1.192 26 H -0.223 1.223 27 H -0.229 1.229 28 C -0.117 4.117 29 H 0.135 0.865 30 C 0.000 4.000 31 C -0.094 4.094 32 H 0.258 0.742 33 H 0.140 0.860 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.210 0.790 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.713 -21.455 -2.803 22.379 hybrid contribution 1.056 2.078 0.085 2.333 sum -4.657 -19.376 -2.718 20.113 Atomic orbital electron populations 1.81292 1.13170 1.11635 1.10350 1.24791 0.91546 0.91521 0.91844 1.15380 0.84183 1.12860 1.04610 1.23078 0.81130 0.97458 0.98691 1.42602 1.09635 1.36923 1.22003 0.70942 1.19476 0.93657 1.07643 0.95998 1.17114 0.81664 0.78982 0.83885 1.90837 1.86236 1.44812 1.24213 1.49074 1.05374 1.54853 1.25519 1.22663 0.97617 0.98037 0.84191 1.21946 0.93749 1.00173 0.96071 0.92593 1.21200 0.93832 0.98035 0.99265 1.21353 0.97124 0.99205 0.97000 1.22036 0.98204 0.99493 0.96844 1.20150 0.93361 0.84904 0.94745 0.94029 1.42679 1.25052 1.04484 1.64560 1.19618 1.01689 0.88558 1.26033 0.91018 1.25366 0.98990 1.00291 1.02113 1.69787 1.24876 1.24306 1.42940 0.85258 0.78518 0.80393 0.76766 1.19186 1.22326 1.22949 1.22076 0.94037 1.00732 0.94853 0.86538 1.21531 0.82248 0.98558 0.97652 1.21068 0.89890 0.99179 0.99233 0.74207 0.85965 0.88920 0.89838 0.88480 0.95404 0.91039 0.94841 0.90212 0.78979 0.94477 0.94580 0.91194 0.83710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.71 18.54 19.00 0.35 -12.35 16 2 C 0.32 6.56 15.83 88.33 1.40 7.96 16 3 C -0.16 -2.60 5.97 -21.30 -0.13 -2.72 16 4 C 0.14 1.06 11.90 84.28 1.00 2.06 16 5 N -0.51 -5.15 5.32 -183.26 -0.98 -6.13 16 6 H 0.44 1.86 5.13 -92.71 -0.48 1.39 16 7 C -0.06 -1.19 6.80 40.02 0.27 -0.92 16 8 C 0.59 17.59 7.83 86.48 0.68 18.26 16 9 O -0.58 -22.94 17.22 -4.31 -0.07 -23.01 16 10 N -0.62 -15.84 3.38 -817.43 -2.76 -18.60 16 11 C 0.10 1.45 5.08 85.98 0.44 1.89 16 12 C -0.10 -2.17 2.35 -10.42 -0.02 -2.20 16 13 H 0.06 1.80 5.89 -2.39 -0.01 1.79 16 14 C -0.09 -1.38 5.70 30.31 0.17 -1.21 16 15 C -0.11 -2.67 5.66 30.71 0.17 -2.50 16 16 C -0.13 -3.51 5.54 30.72 0.17 -3.34 16 17 C 0.18 5.95 2.93 44.77 0.13 6.08 16 18 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 19 N -0.73 -33.13 4.26 -324.01 -1.38 -34.51 16 20 C -0.23 -12.04 9.95 84.03 0.84 -11.20 16 21 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 22 C -0.08 -4.26 5.50 84.86 0.47 -3.79 16 23 N -0.97 -58.28 13.06 21.65 0.28 -57.99 16 24 Si 0.96 46.23 29.55 68.60 2.03 48.26 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 27 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 28 C -0.10 -2.45 2.09 -10.63 -0.02 -2.48 16 29 H 0.12 2.10 7.95 -2.39 -0.02 2.08 16 30 C 0.12 3.77 6.56 85.82 0.56 4.33 16 31 C -0.07 -1.43 10.55 22.59 0.24 -1.19 16 32 H 0.24 -0.74 8.06 -2.91 -0.02 -0.77 16 33 H 0.12 0.81 8.12 -2.38 -0.02 0.79 16 34 H 0.09 1.01 5.59 -2.39 -0.01 0.99 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.10 0.97 8.00 -2.38 -0.02 0.95 16 37 H 0.03 0.92 8.01 -2.39 -0.02 0.90 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.38 18.52 5.53 -92.71 -0.51 18.01 16 42 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 43 H 0.04 1.50 7.71 -2.39 -0.02 1.48 16 44 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 45 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -81.00 365.87 3.89 -77.11 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.05 Total: 18.19 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.37 Total: 9.04 kcal Atomic # 7 Polarization: -125.10 SS G_CDS: -4.48 Total: -129.58 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.07 Total: -23.01 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -81.00 3.89 -77.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992659708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.247 kcal (2) G-P(sol) polarization free energy of solvation -81.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds