Wall clock time and date at job start Tue Mar 31 2020 15:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99743 * 2 1 4 4 H 1.48499 * 109.47185 * 270.00109 * 3 2 1 5 5 H 1.48500 * 109.47437 * 30.00128 * 3 2 1 6 6 H 1.48503 * 109.46922 * 150.00303 * 3 2 1 7 7 C 1.38808 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99991 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99802 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00117 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47052 * 204.99779 * 10 9 7 12 12 C 1.53001 * 109.46679 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47479 * 60.00295 * 12 11 10 14 14 N 1.46499 * 109.47359 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99880 * 205.00257 * 14 13 12 16 16 O 1.21778 * 120.00300 * 354.94409 * 15 14 13 17 17 C 1.41816 * 120.00134 * 174.95209 * 15 14 13 18 18 C 1.38526 * 126.78442 * 5.11562 * 17 15 14 19 19 N 1.32325 * 108.21349 * 180.02562 * 18 17 15 20 20 C 1.33199 * 109.81465 * 359.97438 * 19 18 17 21 21 C 1.40655 * 131.81730 * 180.02562 * 20 19 18 22 22 C 1.36281 * 119.38553 * 179.97438 * 21 20 19 23 23 C 1.40177 * 119.60928 * 0.02562 * 22 21 20 24 24 C 1.35261 * 120.12448 * 359.97295 * 23 22 21 25 25 N 1.35956 * 120.63887 * 359.74822 * 24 23 22 26 26 C 1.52994 * 109.47111 * 299.99905 * 13 12 11 27 27 C 1.53004 * 109.47224 * 59.99718 * 26 13 12 28 28 H 0.97004 * 120.00514 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00276 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47320 * 324.99910 * 10 9 7 31 31 H 1.08997 * 109.46914 * 60.00860 * 11 10 9 32 32 H 1.08996 * 109.47161 * 299.99668 * 11 10 9 33 33 H 1.09000 * 109.47214 * 179.97438 * 12 11 10 34 34 H 1.08996 * 109.47572 * 300.00057 * 12 11 10 35 35 H 1.09009 * 109.46754 * 59.99643 * 13 12 11 36 36 H 0.96999 * 119.99608 * 25.00322 * 14 13 12 37 37 H 1.08005 * 125.89029 * 359.97438 * 18 17 15 38 38 H 1.08003 * 120.31153 * 359.95894 * 21 20 19 39 39 H 1.07998 * 120.19698 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.93643 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.68145 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.47275 * 300.00091 * 26 13 12 43 43 H 1.08995 * 109.47679 * 179.97438 * 26 13 12 44 44 H 1.09000 * 109.47567 * 180.02562 * 27 26 13 45 45 H 1.08999 * 109.47143 * 59.99732 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.4996 -2.2586 0.6079 12 6 6.2643 -3.5837 0.6085 13 6 6.4099 -4.0892 -0.8283 14 7 7.1427 -5.3578 -0.8278 15 6 7.8249 -5.7423 -1.9246 16 8 7.7579 -5.0824 -2.9459 17 6 8.6209 -6.9155 -1.8895 18 6 8.7209 -7.8191 -0.8443 19 7 9.5642 -8.7739 -1.2023 20 6 10.0191 -8.5370 -2.4316 21 6 10.9201 -9.2416 -3.2502 22 6 11.2116 -8.7613 -4.4918 23 6 10.6110 -7.5744 -4.9338 24 6 9.7471 -6.9112 -4.1318 25 7 9.4465 -7.3865 -2.8941 26 6 5.0225 -4.3014 -1.4373 27 6 4.2577 -2.9762 -1.4379 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0014 30 1 3.5650 -3.2062 0.5887 31 1 5.3958 -1.8990 1.6317 32 1 6.0467 -1.5232 0.0181 33 1 7.2529 -3.4326 1.0419 34 1 5.7171 -4.3189 1.1985 35 1 6.9572 -3.3540 -1.4183 36 1 7.1368 -5.9209 -0.0380 37 1 8.2010 -7.7548 0.1002 38 1 11.3769 -10.1547 -2.8980 39 1 11.9019 -9.2916 -5.1311 40 1 10.8386 -7.1888 -5.9166 41 1 9.2881 -5.9975 -4.4798 42 1 4.4752 -5.0364 -0.8472 43 1 5.1262 -4.6611 -2.4610 44 1 3.2691 -3.1274 -1.8714 45 1 4.8050 -2.2411 -2.0279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026517841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:13 Heat of formation + Delta-G solvation = 58.099962 kcal Electronic energy + Delta-G solvation = -27038.196017 eV Core-core repulsion = 23249.747878 eV Total energy + Delta-G solvation = -3788.448138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.32834 -40.01069 -38.11612 -37.77624 -35.08607 -34.02202 -33.18817 -31.28653 -30.70319 -30.49278 -29.66728 -27.56375 -24.69247 -24.04067 -23.10057 -22.68242 -22.44485 -21.14428 -20.61225 -19.74672 -18.48973 -17.49215 -17.40132 -16.85908 -16.58915 -16.16395 -16.05311 -15.13601 -14.99418 -14.79449 -14.50109 -14.29578 -14.00482 -13.76870 -13.46942 -12.94479 -12.91461 -12.68415 -12.43804 -12.36767 -12.18159 -11.98397 -11.75297 -11.49809 -11.18354 -10.92787 -10.87482 -10.81033 -10.62524 -10.25296 -10.20310 -10.01856 -9.83714 -9.56418 -9.40105 -9.10791 -8.87314 -8.32529 -7.24614 -5.75294 -3.10521 0.24634 0.38422 1.89636 1.95018 3.02069 3.13112 3.15216 3.38672 3.41880 3.46617 3.67140 4.03622 4.29540 4.37004 4.55761 4.59009 4.60688 4.79768 4.91102 4.95163 5.00649 5.11116 5.31890 5.46176 5.47414 5.50832 5.54286 5.60822 5.62215 5.75113 5.78886 5.91389 5.96825 5.98317 6.10243 6.16673 6.18201 6.36289 6.44875 6.48327 6.51884 6.63888 6.90049 7.05289 7.21509 7.34890 8.00083 8.01666 8.44034 9.22854 9.95601 10.15558 11.43106 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031790 B = 0.002144 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.558600 B =13056.339174 C =13384.401714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.241 4.241 8 H 0.090 0.910 9 N -0.750 5.750 10 C 0.181 3.819 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.150 3.850 14 N -0.714 5.714 15 C 0.597 3.403 16 O -0.552 6.552 17 C -0.144 4.144 18 C 0.107 3.893 19 N -0.496 5.496 20 C 0.242 3.758 21 C -0.092 4.092 22 C -0.086 4.086 23 C -0.146 4.146 24 C 0.076 3.924 25 N -0.322 5.322 26 C -0.124 4.124 27 C -0.132 4.132 28 H 0.259 0.741 29 H 0.360 0.640 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.399 0.601 37 H 0.192 0.808 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.157 0.843 41 H 0.178 0.822 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.510 -18.850 -5.799 32.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.371 4.371 8 H 0.108 0.892 9 N -0.392 5.392 10 C 0.072 3.928 11 C -0.162 4.162 12 C -0.158 4.158 13 C 0.046 3.954 14 N -0.364 5.364 15 C 0.386 3.614 16 O -0.432 6.432 17 C -0.258 4.258 18 C -0.054 4.054 19 N -0.214 5.214 20 C 0.002 3.998 21 C -0.112 4.112 22 C -0.110 4.110 23 C -0.166 4.166 24 C -0.048 4.048 25 N 0.009 4.991 26 C -0.164 4.164 27 C -0.173 4.173 28 H 0.069 0.931 29 H 0.193 0.807 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.233 0.767 37 H 0.208 0.792 38 H 0.174 0.826 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.195 0.805 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 25.383 -19.017 -6.028 32.284 hybrid contribution 0.227 1.635 -0.195 1.663 sum 25.609 -17.381 -6.223 31.570 Atomic orbital electron populations 1.69702 1.05097 1.25765 1.57717 1.24680 0.95241 0.97216 1.02184 0.86545 0.79183 0.85022 0.77754 1.21149 1.21826 1.20326 1.19076 0.80629 0.94654 1.42722 0.89225 1.42790 1.03995 1.02069 1.90297 1.20225 0.90220 0.89124 0.93243 1.21788 0.96863 0.95782 1.01805 1.21750 1.00633 0.98523 0.94870 1.21138 0.92737 0.83961 0.97558 1.45786 1.51405 1.23719 1.15457 1.15393 0.79043 0.82923 0.84090 1.90828 1.65524 1.56189 1.30669 1.19917 1.09342 1.04482 0.92049 1.23200 0.95298 0.89106 0.97759 1.70517 1.14935 1.26866 1.09124 1.21133 0.98903 0.87269 0.92530 1.20360 0.97102 1.00773 0.92940 1.21200 0.98856 0.95547 0.95386 1.21002 0.98096 0.96478 1.01062 1.22129 0.98659 1.01060 0.82986 1.42431 1.27518 1.17972 1.11185 1.21900 0.94483 0.99208 1.00774 1.22186 1.00035 0.94748 1.00319 0.93117 0.80712 0.92659 0.91207 0.92106 0.91678 0.91164 0.89459 0.76654 0.79165 0.82645 0.83474 0.82575 0.80458 0.92002 0.92089 0.91277 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 22.19 27.73 -169.99 -4.71 17.47 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.51 6.52 56.52 0.37 -6.14 16 7 C -0.24 -6.74 10.41 -15.06 -0.16 -6.90 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -17.47 4.93 -53.43 -0.26 -17.73 16 10 C 0.18 3.34 2.77 -67.93 -0.19 3.15 16 11 C -0.12 -1.80 5.39 -26.73 -0.14 -1.94 16 12 C -0.12 -1.33 5.39 -26.73 -0.14 -1.47 16 13 C 0.15 1.84 2.41 -67.93 -0.16 1.67 16 14 N -0.71 -7.40 5.05 -56.64 -0.29 -7.69 16 15 C 0.60 7.49 7.55 -14.89 -0.11 7.38 16 16 O -0.55 -8.66 15.03 5.12 0.08 -8.59 16 17 C -0.14 -1.63 6.83 -83.48 -0.57 -2.20 16 18 C 0.11 1.04 11.32 -17.23 -0.20 0.84 16 19 N -0.50 -5.57 11.25 -12.27 -0.14 -5.71 16 20 C 0.24 2.51 7.77 -156.06 -1.21 1.30 16 21 C -0.09 -0.64 10.10 -39.37 -0.40 -1.03 16 22 C -0.09 -0.42 10.07 -39.56 -0.40 -0.82 16 23 C -0.15 -0.84 10.00 -39.91 -0.40 -1.24 16 24 C 0.08 0.68 10.51 -16.78 -0.18 0.51 16 25 N -0.32 -3.52 2.96 -60.14 -0.18 -3.69 16 26 C -0.12 -1.77 5.50 -26.73 -0.15 -1.91 16 27 C -0.13 -2.29 5.50 -26.73 -0.15 -2.44 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.36 8.29 5.66 -40.82 -0.23 8.06 16 30 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.23 7.65 -51.92 -0.40 0.83 16 36 H 0.40 2.91 7.39 -40.82 -0.30 2.60 16 37 H 0.19 1.10 7.37 -52.48 -0.39 0.72 16 38 H 0.16 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.15 0.24 8.06 -52.49 -0.42 -0.18 16 40 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 41 H 0.18 1.67 6.81 -52.49 -0.36 1.31 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.06 0.94 8.10 -51.93 -0.42 0.51 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 367.29 15.07 5.53 5.53 Total: -1.00 -35.94 367.29 -10.18 -46.12 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.33 Total: 8.07 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -4.65 Total: -5.14 kcal Atomic # 7 Polarization: -63.38 SS G_CDS: -0.09 Total: -63.47 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.08 Total: -8.59 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.71 Total: 17.47 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.94 -10.18 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026517841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.218 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds