Wall clock time and date at job start Tue Mar 31 2020 15:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99743 * 2 1 4 4 H 1.48499 * 109.47185 * 270.00109 * 3 2 1 5 5 H 1.48500 * 109.47437 * 30.00128 * 3 2 1 6 6 H 1.48503 * 109.46922 * 150.00303 * 3 2 1 7 7 C 1.38808 * 119.99910 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99991 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99802 * 179.97438 * 7 2 1 10 10 C 1.46499 * 120.00117 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47052 * 204.99779 * 10 9 7 12 12 C 1.53001 * 109.46679 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47479 * 60.00295 * 12 11 10 14 14 N 1.46499 * 109.47359 * 179.97438 * 13 12 11 15 15 C 1.34773 * 119.99880 * 205.00257 * 14 13 12 16 16 O 1.21778 * 120.00300 * 354.94409 * 15 14 13 17 17 C 1.41816 * 120.00134 * 174.95209 * 15 14 13 18 18 C 1.38526 * 126.78442 * 5.11562 * 17 15 14 19 19 N 1.32325 * 108.21349 * 180.02562 * 18 17 15 20 20 C 1.33199 * 109.81465 * 359.97438 * 19 18 17 21 21 C 1.40655 * 131.81730 * 180.02562 * 20 19 18 22 22 C 1.36281 * 119.38553 * 179.97438 * 21 20 19 23 23 C 1.40177 * 119.60928 * 0.02562 * 22 21 20 24 24 C 1.35261 * 120.12448 * 359.97295 * 23 22 21 25 25 N 1.35956 * 120.63887 * 359.74822 * 24 23 22 26 26 C 1.52994 * 109.47111 * 299.99905 * 13 12 11 27 27 C 1.53004 * 109.47224 * 59.99718 * 26 13 12 28 28 H 0.97004 * 120.00514 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00276 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47320 * 324.99910 * 10 9 7 31 31 H 1.08997 * 109.46914 * 60.00860 * 11 10 9 32 32 H 1.08996 * 109.47161 * 299.99668 * 11 10 9 33 33 H 1.09000 * 109.47214 * 179.97438 * 12 11 10 34 34 H 1.08996 * 109.47572 * 300.00057 * 12 11 10 35 35 H 1.09009 * 109.46754 * 59.99643 * 13 12 11 36 36 H 0.96999 * 119.99608 * 25.00322 * 14 13 12 37 37 H 1.08005 * 125.89029 * 359.97438 * 18 17 15 38 38 H 1.08003 * 120.31153 * 359.95894 * 21 20 19 39 39 H 1.07998 * 120.19698 * 179.97438 * 22 21 20 40 40 H 1.07996 * 119.93643 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.68145 * 180.02562 * 24 23 22 42 42 H 1.08999 * 109.47275 * 300.00091 * 26 13 12 43 43 H 1.08995 * 109.47679 * 179.97438 * 26 13 12 44 44 H 1.09000 * 109.47567 * 180.02562 * 27 26 13 45 45 H 1.08999 * 109.47143 * 59.99732 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.4996 -2.2586 0.6079 12 6 6.2643 -3.5837 0.6085 13 6 6.4099 -4.0892 -0.8283 14 7 7.1427 -5.3578 -0.8278 15 6 7.8249 -5.7423 -1.9246 16 8 7.7579 -5.0824 -2.9459 17 6 8.6209 -6.9155 -1.8895 18 6 8.7209 -7.8191 -0.8443 19 7 9.5642 -8.7739 -1.2023 20 6 10.0191 -8.5370 -2.4316 21 6 10.9201 -9.2416 -3.2502 22 6 11.2116 -8.7613 -4.4918 23 6 10.6110 -7.5744 -4.9338 24 6 9.7471 -6.9112 -4.1318 25 7 9.4465 -7.3865 -2.8941 26 6 5.0225 -4.3014 -1.4373 27 6 4.2577 -2.9762 -1.4379 28 1 -0.4851 0.8400 0.0004 29 1 3.8646 -0.3620 -0.0014 30 1 3.5650 -3.2062 0.5887 31 1 5.3958 -1.8990 1.6317 32 1 6.0467 -1.5232 0.0181 33 1 7.2529 -3.4326 1.0419 34 1 5.7171 -4.3189 1.1985 35 1 6.9572 -3.3540 -1.4183 36 1 7.1368 -5.9209 -0.0380 37 1 8.2010 -7.7548 0.1002 38 1 11.3769 -10.1547 -2.8980 39 1 11.9019 -9.2916 -5.1311 40 1 10.8386 -7.1888 -5.9166 41 1 9.2881 -5.9975 -4.4798 42 1 4.4752 -5.0364 -0.8472 43 1 5.1262 -4.6611 -2.4610 44 1 3.2691 -3.1274 -1.8714 45 1 4.8050 -2.2411 -2.0279 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026517841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:12 Heat of formation + Delta-G solvation = 33.790597 kcal Electronic energy + Delta-G solvation = -27039.250150 eV Core-core repulsion = 23249.747878 eV Total energy + Delta-G solvation = -3789.502272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.99542 -41.00552 -39.30734 -38.42215 -36.51081 -34.78483 -34.61054 -33.02404 -31.70206 -31.47019 -30.58894 -28.84319 -25.71759 -24.85484 -24.52461 -23.65339 -23.32469 -22.41210 -21.56260 -21.11386 -19.70443 -19.08259 -18.05841 -17.57281 -17.32405 -17.11496 -16.73316 -16.65823 -16.20345 -15.78859 -15.55247 -15.34598 -15.08247 -14.95508 -14.65438 -14.59124 -14.35960 -13.65516 -13.38243 -13.33524 -13.10915 -13.00906 -12.95066 -12.91392 -12.47047 -12.29444 -12.08299 -12.03931 -11.95161 -11.79258 -11.56750 -11.47405 -11.22787 -11.03441 -10.86718 -10.17898 -9.98300 -9.29112 -8.99621 -8.01092 -5.33853 -0.35427 -0.22006 1.22025 1.26976 1.37763 1.41347 1.48583 2.26637 2.29002 2.46083 2.49402 3.09886 3.29978 3.44060 3.57150 3.69470 3.76650 3.83874 3.86488 3.94238 4.11531 4.24907 4.27433 4.32389 4.35754 4.51942 4.56315 4.58732 4.62579 4.79986 4.86023 4.94378 5.02007 5.10508 5.13670 5.14844 5.23958 5.26771 5.32763 5.44989 5.46976 5.51778 5.60365 5.79664 5.85651 6.23662 6.43941 6.60253 7.09897 7.13954 7.87249 8.05854 9.20552 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.031790 B = 0.002144 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.558600 B =13056.339174 C =13384.401714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.955 3.045 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.248 1.248 7 C -0.225 4.225 8 H 0.055 0.945 9 N -0.753 5.753 10 C 0.174 3.826 11 C -0.116 4.116 12 C -0.107 4.107 13 C 0.158 3.842 14 N -0.699 5.699 15 C 0.597 3.403 16 O -0.594 6.594 17 C -0.181 4.181 18 C 0.118 3.882 19 N -0.525 5.525 20 C 0.226 3.774 21 C -0.104 4.104 22 C -0.067 4.067 23 C -0.124 4.124 24 C 0.038 3.962 25 N -0.331 5.331 26 C -0.114 4.114 27 C -0.124 4.124 28 H 0.256 0.744 29 H 0.365 0.635 30 H 0.047 0.953 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.417 0.583 37 H 0.224 0.776 38 H 0.178 0.822 39 H 0.191 0.809 40 H 0.190 0.810 41 H 0.163 0.837 42 H 0.072 0.928 43 H 0.046 0.954 44 H 0.035 0.965 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.369 -20.095 -5.649 36.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.260 4.260 3 Si 0.783 3.217 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.172 1.172 7 C -0.356 4.356 8 H 0.073 0.927 9 N -0.396 5.396 10 C 0.067 3.933 11 C -0.155 4.155 12 C -0.145 4.145 13 C 0.054 3.946 14 N -0.350 5.350 15 C 0.388 3.612 16 O -0.477 6.477 17 C -0.294 4.294 18 C -0.043 4.043 19 N -0.244 5.244 20 C -0.013 4.013 21 C -0.124 4.124 22 C -0.091 4.091 23 C -0.143 4.143 24 C -0.087 4.087 25 N 0.001 4.999 26 C -0.153 4.153 27 C -0.164 4.164 28 H 0.065 0.935 29 H 0.198 0.802 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.254 0.746 37 H 0.240 0.760 38 H 0.195 0.805 39 H 0.209 0.791 40 H 0.207 0.793 41 H 0.180 0.820 42 H 0.091 0.909 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 29.303 -20.314 -5.853 36.133 hybrid contribution -0.908 1.832 -0.392 2.082 sum 28.395 -18.482 -6.245 34.451 Atomic orbital electron populations 1.69890 1.07138 1.26541 1.60113 1.25525 0.96147 1.01311 1.03050 0.85400 0.78820 0.79653 0.77866 1.20978 1.22341 1.17213 1.19031 0.82760 0.93277 1.40547 0.92657 1.42836 1.02403 1.04134 1.90205 1.20488 0.92153 0.86927 0.93767 1.21691 0.94250 0.97941 1.01589 1.21675 1.01906 0.96918 0.94050 1.20890 0.91102 0.84524 0.98088 1.45526 1.50493 1.23221 1.15731 1.15601 0.78900 0.82957 0.83774 1.90801 1.67059 1.57589 1.32244 1.19871 1.11084 1.05064 0.93398 1.23737 0.94384 0.87905 0.98306 1.70525 1.16145 1.27765 1.09984 1.21766 0.99328 0.87409 0.92840 1.20828 0.96657 1.01453 0.93420 1.21732 0.97932 0.94612 0.94820 1.21527 0.95481 0.95827 1.01495 1.22309 1.00933 1.01959 0.83474 1.42579 1.27526 1.18207 1.11607 1.21769 0.95710 0.97340 1.00488 1.22006 0.98664 0.96453 0.99320 0.93486 0.80237 0.93471 0.90614 0.91836 0.88784 0.89361 0.91136 0.74550 0.76011 0.80516 0.79141 0.79270 0.81978 0.90940 0.93544 0.94582 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.14 13.97 21.65 0.30 -63.84 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 3 Si 0.96 46.11 27.73 68.60 1.90 48.02 16 4 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.25 -10.64 6.52 99.48 0.65 -9.99 16 7 C -0.23 -12.92 10.41 84.03 0.87 -12.04 16 8 H 0.06 3.49 8.06 -2.91 -0.02 3.47 16 9 N -0.75 -35.00 4.93 -322.94 -1.59 -36.59 16 10 C 0.17 6.36 2.77 44.99 0.12 6.48 16 11 C -0.12 -3.11 5.39 30.60 0.16 -2.94 16 12 C -0.11 -2.06 5.39 30.60 0.16 -1.90 16 13 C 0.16 3.68 2.41 44.99 0.11 3.79 16 14 N -0.70 -13.56 5.05 -451.29 -2.28 -15.84 16 15 C 0.60 15.04 7.55 85.13 0.64 15.69 16 16 O -0.59 -19.36 15.03 -4.60 -0.07 -19.42 16 17 C -0.18 -4.08 6.83 39.08 0.27 -3.82 16 18 C 0.12 2.17 11.32 84.69 0.96 3.13 16 19 N -0.52 -11.32 11.25 -192.73 -2.17 -13.48 16 20 C 0.23 4.46 7.77 134.00 1.04 5.50 16 21 C -0.10 -1.18 10.10 22.40 0.23 -0.96 16 22 C -0.07 -0.41 10.07 22.28 0.22 -0.18 16 23 C -0.12 -1.09 10.00 22.05 0.22 -0.87 16 24 C 0.04 0.67 10.51 83.37 0.88 1.55 16 25 N -0.33 -7.17 2.96 -344.19 -1.02 -8.19 16 26 C -0.11 -3.23 5.50 30.59 0.17 -3.06 16 27 C -0.12 -4.39 5.50 30.60 0.17 -4.22 16 28 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 29 H 0.36 16.25 5.66 -92.71 -0.52 15.73 16 30 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 31 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.94 7.65 -2.38 -0.02 1.92 16 36 H 0.42 5.04 7.39 -92.71 -0.69 4.35 16 37 H 0.22 2.09 7.37 -2.91 -0.02 2.07 16 38 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 39 H 0.19 -0.47 8.06 -2.91 -0.02 -0.49 16 40 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 41 H 0.16 3.27 6.81 -2.91 -0.02 3.25 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.05 1.46 8.10 -2.39 -0.02 1.44 16 44 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -83.35 367.29 1.53 -81.82 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -0.25 Total: 25.07 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 6.70 Total: 2.47 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -6.75 Total: -137.94 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.07 Total: -19.42 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 1.90 Total: 48.02 kcal Total: -83.35 1.53 -81.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026517841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.610 kcal (2) G-P(sol) polarization free energy of solvation -83.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds