Wall clock time and date at job start Tue Mar 31 2020 14:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00086 * 2 1 4 4 H 1.48500 * 109.46960 * 270.00261 * 3 2 1 5 5 H 1.48504 * 109.47129 * 29.99649 * 3 2 1 6 6 H 1.48500 * 109.47297 * 149.99883 * 3 2 1 7 7 C 1.38811 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00304 * 0.02562 * 7 2 1 9 9 N 1.36932 * 119.99634 * 180.02562 * 7 2 1 10 10 C 1.46505 * 119.99948 * 174.22594 * 9 7 2 11 11 C 1.53000 * 110.01680 * 301.45050 * 10 9 7 12 12 N 1.46497 * 109.46923 * 303.90209 * 11 10 9 13 13 C 1.34784 * 120.00179 * 175.12734 * 12 11 10 14 14 O 1.21644 * 119.99247 * 359.97438 * 13 12 11 15 15 C 1.47162 * 119.99975 * 179.97438 * 13 12 11 16 16 C 1.38590 * 120.72928 * 0.02562 * 15 13 12 17 17 C 1.38925 * 121.36153 * 179.97438 * 16 15 13 18 18 C 1.35820 * 122.59979 * 0.04655 * 17 16 15 19 19 C 1.40842 * 120.55537 * 359.97438 * 18 17 16 20 20 C 1.38425 * 134.89728 * 179.97438 * 19 18 17 21 21 N 1.33889 * 107.84641 * 179.97438 * 20 19 18 22 22 H 0.96996 * 125.01994 * 180.02562 * 21 20 19 23 23 N 1.39982 * 109.96252 * 359.97438 * 21 20 19 24 24 C 1.31487 * 109.01481 * 359.67290 * 23 21 20 25 25 C 1.54272 * 110.07213 * 62.86721 * 10 9 7 26 26 C 1.54887 * 104.19293 * 95.69928 * 25 10 9 27 27 C 1.54890 * 102.75414 * 37.94257 * 26 25 10 28 28 C 1.53879 * 110.03506 * 180.02562 * 10 9 7 29 29 H 0.96997 * 119.99807 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00449 * 354.22373 * 9 7 2 31 31 H 1.09001 * 109.47328 * 183.89983 * 11 10 9 32 32 H 1.08996 * 109.46844 * 63.89821 * 11 10 9 33 33 H 0.97002 * 120.00128 * 355.12549 * 12 11 10 34 34 H 1.08003 * 119.31390 * 359.97438 * 16 15 13 35 35 H 1.08003 * 118.69722 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.72248 * 179.97438 * 18 17 16 37 37 H 1.07996 * 126.07846 * 0.02562 * 20 19 18 38 38 H 1.08995 * 110.48274 * 214.37460 * 25 10 9 39 39 H 1.08997 * 110.48277 * 337.01886 * 25 10 9 40 40 H 1.09002 * 110.75784 * 279.62532 * 26 25 10 41 41 H 1.09000 * 110.75652 * 156.25632 * 26 25 10 42 42 H 1.08997 * 110.48683 * 203.38209 * 27 26 25 43 43 H 1.08996 * 110.48614 * 80.72848 * 27 26 25 44 44 H 1.09003 * 110.02949 * 359.94874 * 28 10 9 45 45 H 1.08993 * 110.03236 * 121.37810 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4644 0.1293 11 6 3.7239 -3.1651 1.4328 12 7 3.9655 -2.2640 2.5623 13 6 3.6036 -2.6320 3.8074 14 8 3.0759 -3.7121 3.9931 15 6 3.8469 -1.7270 4.9421 16 6 4.4466 -0.4927 4.7475 17 6 4.6820 0.3721 5.8090 18 6 4.3452 0.0680 7.0892 19 6 3.7309 -1.1620 7.3950 20 6 3.2752 -1.7648 8.5548 21 7 2.7729 -2.9613 8.2253 22 1 2.3850 -3.5935 8.8504 23 7 2.8892 -3.1648 6.8452 24 6 3.4520 -2.1078 6.3023 25 6 3.8050 -3.3794 -1.0743 26 6 4.9715 -3.1163 -2.0587 27 6 6.1887 -2.9624 -1.1132 28 6 5.6277 -2.1994 0.1037 29 1 -0.4850 0.8400 -0.0004 30 1 3.8647 -0.3664 -0.0835 31 1 4.3236 -4.0673 1.5530 32 1 2.6677 -3.4325 1.4009 33 1 4.3860 -1.4025 2.4141 34 1 4.7369 -0.1972 3.7501 35 1 5.1517 1.3237 5.6083 36 1 4.5502 0.7752 7.8792 37 1 3.3167 -1.3444 9.5487 38 1 3.7946 -4.4247 -0.7658 39 1 2.8530 -3.1052 -1.5287 40 1 4.8018 -2.1989 -2.6224 41 1 5.1088 -3.9638 -2.7303 42 1 6.9761 -2.3838 -1.5962 43 1 6.5631 -3.9404 -0.8111 44 1 5.8182 -1.1317 -0.0051 45 1 6.0870 -2.5696 1.0201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753666286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:52 Heat of formation + Delta-G solvation = 73.741148 kcal Electronic energy + Delta-G solvation = -28151.529007 eV Core-core repulsion = 24363.759121 eV Total energy + Delta-G solvation = -3787.769886 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.25300 -39.36863 -38.14477 -36.73678 -34.05541 -33.28512 -32.06404 -31.10951 -30.63346 -29.12626 -28.31291 -27.89012 -24.94767 -24.18838 -22.89913 -21.89377 -21.54059 -20.33436 -19.55986 -18.62086 -18.08388 -17.52476 -17.23092 -16.70472 -15.60960 -15.40498 -15.03502 -14.94798 -14.61414 -14.31453 -14.19115 -13.96451 -13.71684 -13.23939 -12.98965 -12.75464 -12.62139 -12.14992 -12.08987 -11.81780 -11.69768 -11.65329 -11.21742 -10.82071 -10.77462 -10.62607 -10.50288 -10.41936 -10.34115 -10.25428 -10.18405 -9.94008 -9.50771 -9.30367 -8.90491 -8.87914 -8.34815 -7.64524 -7.27057 -5.73606 -3.10603 0.33176 1.76414 2.23713 2.60032 3.30114 3.33632 3.37579 3.45109 3.70193 4.11138 4.19678 4.45545 4.59340 4.87984 4.99861 5.05499 5.09348 5.10985 5.14153 5.27898 5.37362 5.45618 5.57996 5.61539 5.73085 5.88527 5.91090 5.93894 6.03827 6.14327 6.23944 6.25465 6.26032 6.31656 6.42806 6.46848 6.52800 6.55506 6.74556 6.75456 6.81573 6.95908 7.00954 7.15287 7.58555 8.02774 8.14721 8.44936 8.84789 9.22092 9.93606 10.12279 11.44612 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011711 B = 0.004100 C = 0.003583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.329395 B = 6827.383839 C = 7811.848611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.277 1.277 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.736 5.736 10 C 0.194 3.806 11 C 0.123 3.877 12 N -0.700 5.700 13 C 0.553 3.447 14 O -0.534 6.534 15 C -0.105 4.105 16 C -0.035 4.035 17 C -0.164 4.164 18 C -0.021 4.021 19 C -0.218 4.218 20 C 0.084 3.916 21 N -0.433 5.433 22 H 0.443 0.557 23 N -0.266 5.266 24 C 0.137 3.863 25 C -0.131 4.131 26 C -0.118 4.118 27 C -0.121 4.121 28 C -0.129 4.129 29 H 0.258 0.742 30 H 0.360 0.640 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.395 0.605 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.188 0.812 38 H 0.056 0.944 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.965 -0.934 13.781 19.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.366 4.366 8 H 0.109 0.891 9 N -0.379 5.379 10 C 0.103 3.897 11 C -0.003 4.003 12 N -0.351 5.351 13 C 0.340 3.660 14 O -0.412 6.412 15 C -0.112 4.112 16 C -0.058 4.058 17 C -0.183 4.183 18 C -0.041 4.041 19 C -0.229 4.229 20 C -0.073 4.073 21 N -0.133 5.133 22 H 0.287 0.713 23 N -0.092 5.092 24 C -0.021 4.021 25 C -0.171 4.171 26 C -0.156 4.156 27 C -0.158 4.158 28 C -0.168 4.168 29 H 0.068 0.932 30 H 0.194 0.806 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.231 0.769 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.205 0.795 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.805 -2.987 13.666 18.964 hybrid contribution 0.667 2.321 0.477 2.462 sum 13.471 -0.666 14.143 19.543 Atomic orbital electron populations 1.69702 1.05125 1.25631 1.57390 1.24656 0.95097 0.96952 1.02084 0.86636 0.79175 0.85513 0.77610 1.21326 1.21966 1.20334 1.18940 0.80432 0.94600 1.42663 0.89099 1.42896 1.04073 1.02063 1.88899 1.20434 0.89681 0.87664 0.91928 1.21847 1.01865 0.91203 0.85365 1.45593 1.61826 1.21468 1.06166 1.17834 0.79123 0.86365 0.82669 1.90798 1.42629 1.22877 1.84886 1.20018 1.05528 0.96105 0.89525 1.21288 0.93536 0.91441 0.99514 1.20342 1.05024 1.00639 0.92304 1.20228 0.93966 0.93198 0.96717 1.19599 1.12420 0.98942 0.91910 1.22704 0.97555 0.87708 0.99351 1.46581 1.43882 1.14379 1.08416 0.71278 1.77897 1.24927 1.20861 0.85509 1.21529 0.96082 0.91234 0.93241 1.22797 0.99608 0.98330 0.96333 1.22405 0.94869 1.00987 0.97307 1.22296 0.97646 0.99706 0.96185 1.22469 0.95526 1.00451 0.98307 0.93165 0.80641 0.92889 0.90852 0.76936 0.84996 0.85493 0.85722 0.79486 0.92553 0.89782 0.91530 0.92519 0.92361 0.92054 0.91687 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.02 13.97 55.49 0.78 -28.25 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 21.28 27.68 -169.99 -4.71 16.58 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.28 -6.05 6.61 56.52 0.37 -5.68 16 7 C -0.24 -6.30 8.87 -15.06 -0.13 -6.43 16 8 H 0.09 2.68 7.46 -52.49 -0.39 2.29 16 9 N -0.74 -15.83 4.55 -46.19 -0.21 -16.04 16 10 C 0.19 3.47 0.68 -130.69 -0.09 3.38 16 11 C 0.12 2.35 3.99 -4.04 -0.02 2.33 16 12 N -0.70 -13.00 5.05 -61.47 -0.31 -13.31 16 13 C 0.55 11.26 7.77 -12.63 -0.10 11.16 16 14 O -0.53 -12.75 16.32 5.24 0.09 -12.66 16 15 C -0.11 -1.86 6.05 -102.74 -0.62 -2.48 16 16 C -0.03 -0.49 9.50 -39.20 -0.37 -0.87 16 17 C -0.16 -1.88 9.83 -40.19 -0.39 -2.27 16 18 C -0.02 -0.22 10.02 -39.46 -0.40 -0.62 16 19 C -0.22 -2.77 6.34 -105.21 -0.67 -3.43 16 20 C 0.08 0.75 12.08 -16.59 -0.20 0.55 16 21 N -0.43 -4.67 7.18 30.86 0.22 -4.44 16 22 H 0.44 2.91 8.96 -182.69 -1.64 1.27 16 23 N -0.27 -4.58 12.24 34.36 0.42 -4.16 16 24 C 0.14 2.36 7.28 -80.98 -0.59 1.77 16 25 C -0.13 -2.24 5.94 -25.07 -0.15 -2.39 16 26 C -0.12 -1.70 6.91 -24.74 -0.17 -1.87 16 27 C -0.12 -1.55 6.83 -25.11 -0.17 -1.72 16 28 C -0.13 -1.87 5.80 -25.65 -0.15 -2.02 16 29 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 30 H 0.36 7.58 5.20 -40.82 -0.21 7.37 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 1.67 7.50 -51.93 -0.39 1.28 16 33 H 0.40 6.65 6.04 -40.82 -0.25 6.40 16 34 H 0.13 1.67 6.38 -52.48 -0.33 1.34 16 35 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 39 H 0.08 1.69 7.11 -51.93 -0.37 1.32 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.92 7.44 -51.93 -0.39 0.54 16 45 H 0.06 0.88 7.55 -51.93 -0.39 0.48 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -37.37 365.88 -9.84 -47.21 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -7.31 Total: 14.35 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -4.31 Total: -4.78 kcal Atomic # 7 Polarization: -67.10 SS G_CDS: 0.90 Total: -66.20 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.71 Total: 16.58 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.37 -9.84 -47.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753666286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.949 kcal (2) G-P(sol) polarization free energy of solvation -37.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds