Wall clock time and date at job start Tue Mar 31 2020 16:01:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37747 * 120.04463 * 2 1 4 4 C 1.39019 * 120.07841 * 180.02562 * 3 2 1 5 5 N 1.39874 * 119.92053 * 179.97438 * 4 3 2 6 6 C 1.34798 * 126.84700 * 179.71779 * 5 4 3 7 7 N 1.30815 * 108.02204 * 179.83466 * 6 5 4 8 8 C 1.33296 * 109.84562 * 0.43276 * 7 6 5 9 9 N 1.30723 * 109.00972 * 359.73190 * 8 7 6 10 10 C 1.39061 * 120.15964 * 0.02562 * 4 3 2 11 11 C 1.37713 * 120.08065 * 359.97438 * 10 4 3 12 12 C 1.39686 * 120.03653 * 180.02562 * 2 1 3 13 13 C 1.47676 * 120.07798 * 359.69864 * 12 2 1 14 14 O 1.21579 * 120.00209 * 353.99669 * 13 12 2 15 15 N 1.34781 * 120.00108 * 173.98979 * 13 12 2 16 16 C 1.46499 * 119.99878 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46983 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.47315 * 299.99939 * 17 16 15 19 19 C 1.53002 * 109.47066 * 60.00080 * 17 16 15 20 20 C 1.50703 * 109.47447 * 180.02562 * 17 16 15 21 21 H 1.07998 * 119.99493 * 0.02562 * 20 17 16 22 22 C 1.37869 * 120.00045 * 180.02562 * 20 17 16 23 23 N 1.31510 * 120.00659 * 0.02562 * 22 20 17 24 24 Si 1.86808 * 119.99770 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.47115 * 90.00116 * 24 22 20 26 26 H 1.48502 * 109.47157 * 209.99625 * 24 22 20 27 27 H 1.48495 * 109.46936 * 329.99780 * 24 22 20 28 28 H 1.08998 * 109.47222 * 263.42230 * 1 2 3 29 29 H 1.09006 * 109.46943 * 23.42137 * 1 2 3 30 30 H 1.09000 * 109.47581 * 143.41801 * 1 2 3 31 31 H 1.07997 * 119.95495 * 0.02562 * 3 2 1 32 32 H 1.08002 * 125.98939 * 359.97083 * 6 5 4 33 33 H 1.07997 * 125.49131 * 179.72338 * 8 7 6 34 34 H 1.08009 * 119.96206 * 179.97438 * 10 4 3 35 35 H 1.08000 * 120.03915 * 180.02562 * 11 10 4 36 36 H 0.96998 * 119.99637 * 0.02562 * 15 13 12 37 37 H 1.09002 * 109.47271 * 300.00309 * 16 15 13 38 38 H 1.09004 * 109.47113 * 60.00439 * 16 15 13 39 39 H 1.09004 * 109.46734 * 60.00074 * 18 17 16 40 40 H 1.08993 * 109.47258 * 179.97438 * 18 17 16 41 41 H 1.08996 * 109.46949 * 299.99986 * 18 17 16 42 42 H 1.08998 * 109.47227 * 60.00459 * 19 17 16 43 43 H 1.09003 * 109.47072 * 179.97438 * 19 17 16 44 44 H 1.09001 * 109.47031 * 299.99392 * 19 17 16 45 45 H 0.96996 * 120.00627 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1924 0.0000 4 6 3.5868 1.1932 -0.0005 5 7 4.2838 2.4059 -0.0011 6 6 5.6218 2.5693 0.0037 7 7 5.8729 3.8531 -0.0024 8 6 4.7292 4.5378 -0.0015 9 7 3.7290 3.6961 -0.0007 10 6 4.2862 -0.0087 -0.0016 11 6 3.6034 -1.2047 -0.0016 12 6 2.2062 -1.2093 -0.0005 13 6 1.4704 -2.4896 0.0056 14 8 0.2601 -2.4948 0.1212 15 7 2.1405 -3.6526 -0.1171 16 6 1.4104 -4.9227 -0.1116 17 6 2.3995 -6.0801 -0.2638 18 6 3.1571 -5.9331 -1.5849 19 6 3.3933 -6.0580 0.8993 20 6 1.6485 -7.3867 -0.2588 21 1 0.5733 -7.3910 -0.1575 22 6 2.3341 -8.5763 -0.3834 23 7 3.6435 -8.5711 -0.5061 24 14 1.4031 -10.1958 -0.3778 25 1 1.0256 -10.5546 -1.7685 26 1 2.2669 -11.2614 0.1911 27 1 0.1768 -10.0590 0.4484 28 1 -0.3633 -0.1177 1.0209 29 1 -0.3633 0.9431 -0.4085 30 1 -0.3634 -0.8252 -0.6124 31 1 1.6567 2.1277 0.0004 32 1 6.3577 1.7788 0.0091 33 1 4.6429 5.6143 -0.0014 34 1 5.3663 -0.0044 -0.0024 35 1 4.1472 -2.1377 -0.0020 36 1 3.1061 -3.6485 -0.2091 37 1 0.8710 -5.0277 0.8298 38 1 0.7021 -4.9383 -0.9400 39 1 3.7003 -4.9881 -1.5890 40 1 3.8620 -6.7573 -1.6932 41 1 2.4491 -5.9489 -2.4135 42 1 2.8536 -6.1628 1.8404 43 1 4.0977 -6.8828 0.7911 44 1 3.9365 -5.1130 0.8951 45 1 4.1258 -9.4080 -0.5941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457999284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:45 Heat of formation + Delta-G solvation = 82.683543 kcal Electronic energy + Delta-G solvation = -27117.149576 eV Core-core repulsion = 23329.767462 eV Total energy + Delta-G solvation = -3787.382114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.71376 -40.40733 -38.58591 -36.49878 -34.65459 -33.77021 -32.57391 -31.68912 -30.99412 -30.00731 -27.45167 -25.80019 -25.77308 -25.21789 -24.32844 -23.26294 -22.01667 -21.13445 -20.37327 -18.89088 -18.37268 -17.73079 -16.24630 -16.19354 -15.94187 -15.71510 -15.11391 -14.97360 -14.75592 -14.60555 -14.52844 -13.73179 -13.61906 -13.42364 -13.00069 -12.88418 -12.77221 -12.65807 -12.54418 -12.28729 -12.00941 -11.45477 -11.38252 -11.24636 -11.02246 -10.90751 -10.73721 -10.54605 -10.45489 -10.30645 -10.24907 -9.70936 -9.55551 -9.30314 -9.17650 -8.85515 -8.78313 -8.48593 -8.35404 -6.07364 -4.17490 0.13002 0.95217 1.45826 1.76300 2.48201 2.89924 3.25005 3.32331 3.35534 3.55196 3.68101 3.82529 3.97308 4.33666 4.35824 4.48315 4.56866 4.80483 4.82547 5.02540 5.17388 5.19711 5.48729 5.51507 5.68689 5.75456 5.78050 5.92132 5.94769 6.03019 6.16063 6.24846 6.28084 6.40919 6.43022 6.62245 6.70591 6.73645 6.85505 6.92464 6.94569 7.28096 7.48604 7.56246 7.64011 7.91826 7.94387 8.07830 8.31939 8.54205 8.83066 9.48701 10.94105 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.002363 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.949694 B =11845.480194 C =12756.826134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.002 4.002 3 C -0.124 4.124 4 C 0.167 3.833 5 N -0.328 5.328 6 C 0.264 3.736 7 N -0.538 5.538 8 C 0.205 3.795 9 N -0.313 5.313 10 C -0.147 4.147 11 C -0.055 4.055 12 C -0.132 4.132 13 C 0.546 3.454 14 O -0.539 6.539 15 N -0.709 5.709 16 C 0.131 3.869 17 C 0.055 3.945 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.506 4.506 21 H 0.058 0.942 22 C 0.066 3.934 23 N -0.886 5.886 24 Si 0.893 3.107 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.225 0.775 33 H 0.223 0.777 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.397 0.603 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.005 0.995 40 H 0.086 0.914 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.086 0.914 44 H 0.005 0.995 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.117 20.052 0.662 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.003 4.003 3 C -0.144 4.144 4 C 0.074 3.926 5 N -0.112 5.112 6 C -0.031 4.031 7 N -0.264 5.264 8 C -0.097 4.097 9 N -0.138 5.138 10 C -0.168 4.168 11 C -0.075 4.075 12 C -0.136 4.136 13 C 0.332 3.668 14 O -0.419 6.419 15 N -0.359 5.359 16 C 0.009 3.991 17 C 0.055 3.945 18 C -0.189 4.189 19 C -0.189 4.189 20 C -0.544 4.544 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.524 5.524 24 Si 0.721 3.279 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.160 0.840 32 H 0.241 0.759 33 H 0.240 0.760 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.233 0.767 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.024 0.976 40 H 0.105 0.895 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.105 0.895 44 H 0.024 0.976 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.980 20.256 0.719 20.487 hybrid contribution 0.312 -1.039 -0.030 1.085 sum 3.292 19.217 0.689 19.509 Atomic orbital electron populations 1.21128 0.89084 1.03336 1.04202 1.19960 0.97413 0.90405 0.92559 1.20766 0.91270 0.99091 1.03234 1.17683 0.91786 0.81514 1.01650 1.47715 1.05766 1.04967 1.52773 1.26285 0.85087 0.96095 0.95678 1.70649 1.29262 1.02311 1.24177 1.26208 0.84903 1.01362 0.97241 1.78151 1.22632 0.87002 1.26011 1.20664 1.00336 0.89979 1.05814 1.21193 0.93063 0.97915 0.95304 1.20143 0.93546 0.94198 1.05695 1.18094 0.87247 0.83646 0.77775 1.90710 1.13570 1.87152 1.50437 1.46283 1.11229 1.06478 1.71932 1.21783 0.95478 0.81067 1.00764 1.18370 0.91921 0.91454 0.92784 1.21844 1.00359 0.99003 0.97714 1.21843 1.00204 0.99162 0.97705 1.20962 0.93388 0.89807 1.50283 0.92391 1.24875 0.94881 0.98990 0.94760 1.69788 1.06186 1.26557 1.49909 0.86568 0.79809 0.83239 0.78248 1.20701 1.21260 1.19895 0.90189 0.92359 0.87902 0.83957 0.75907 0.76045 0.84462 0.84030 0.76696 0.92412 0.92424 0.97611 0.89520 0.95345 0.95337 0.89496 0.97629 0.92963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 8.72 36.00 0.31 -1.15 16 2 C 0.00 -0.02 5.91 -104.26 -0.62 -0.64 16 3 C -0.12 -1.38 9.29 -39.47 -0.37 -1.74 16 4 C 0.17 1.72 6.70 -83.59 -0.56 1.16 16 5 N -0.33 -3.35 3.81 -11.78 -0.04 -3.40 16 6 C 0.26 2.20 11.97 -90.33 -1.08 1.12 16 7 N -0.54 -5.27 11.19 -15.73 -0.18 -5.45 16 8 C 0.21 1.85 13.03 -91.76 -1.20 0.65 16 9 N -0.31 -3.42 12.03 29.30 0.35 -3.07 16 10 C -0.15 -1.28 9.45 -39.47 -0.37 -1.65 16 11 C -0.06 -0.57 9.52 -39.22 -0.37 -0.94 16 12 C -0.13 -1.71 5.88 -104.95 -0.62 -2.33 16 13 C 0.55 8.85 7.70 -12.40 -0.10 8.76 16 14 O -0.54 -10.14 13.33 5.30 0.07 -10.07 16 15 N -0.71 -11.71 4.91 -61.30 -0.30 -12.01 16 16 C 0.13 2.63 4.50 -4.04 -0.02 2.61 16 17 C 0.06 1.22 0.50 -155.66 -0.08 1.14 16 18 C -0.13 -2.82 8.08 37.16 0.30 -2.52 16 19 C -0.13 -2.81 8.08 37.16 0.30 -2.51 16 20 C -0.51 -12.78 8.01 -34.44 -0.28 -13.06 16 21 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 22 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 23 N -0.89 -22.90 9.35 55.43 0.52 -22.38 16 24 Si 0.89 20.25 29.54 -169.99 -5.02 15.22 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 30 H 0.10 1.46 5.86 -51.93 -0.30 1.16 16 31 H 0.14 1.53 7.72 -52.49 -0.41 1.12 16 32 H 0.22 0.89 7.08 -52.49 -0.37 0.52 16 33 H 0.22 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.14 0.73 6.79 -52.48 -0.36 0.37 16 35 H 0.14 1.24 6.44 -52.49 -0.34 0.90 16 36 H 0.40 5.80 4.22 -40.82 -0.17 5.62 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 40 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.09 2.07 6.07 -51.93 -0.32 1.76 16 44 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 45 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -30.06 364.78 -9.72 -39.78 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -5.79 Total: 5.37 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -4.83 Total: -9.49 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.35 Total: -46.30 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.07 Total: -10.07 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.06 -9.72 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457999284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.459 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds