Wall clock time and date at job start Tue Mar 31 2020 16:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37747 * 120.04463 * 2 1 4 4 C 1.39019 * 120.07841 * 180.02562 * 3 2 1 5 5 N 1.39874 * 119.92053 * 179.97438 * 4 3 2 6 6 C 1.34798 * 126.84700 * 179.71779 * 5 4 3 7 7 N 1.30815 * 108.02204 * 179.83466 * 6 5 4 8 8 C 1.33296 * 109.84562 * 0.43276 * 7 6 5 9 9 N 1.30723 * 109.00972 * 359.73190 * 8 7 6 10 10 C 1.39061 * 120.15964 * 0.02562 * 4 3 2 11 11 C 1.37713 * 120.08065 * 359.97438 * 10 4 3 12 12 C 1.39686 * 120.03653 * 180.02562 * 2 1 3 13 13 C 1.47676 * 120.07798 * 359.69864 * 12 2 1 14 14 O 1.21579 * 120.00209 * 353.99669 * 13 12 2 15 15 N 1.34781 * 120.00108 * 173.98979 * 13 12 2 16 16 C 1.46499 * 119.99878 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.46983 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.47315 * 299.99939 * 17 16 15 19 19 C 1.53002 * 109.47066 * 60.00080 * 17 16 15 20 20 C 1.50703 * 109.47447 * 180.02562 * 17 16 15 21 21 H 1.07998 * 119.99493 * 0.02562 * 20 17 16 22 22 C 1.37869 * 120.00045 * 180.02562 * 20 17 16 23 23 N 1.31510 * 120.00659 * 0.02562 * 22 20 17 24 24 Si 1.86808 * 119.99770 * 180.02562 * 22 20 17 25 25 H 1.48497 * 109.47115 * 90.00116 * 24 22 20 26 26 H 1.48502 * 109.47157 * 209.99625 * 24 22 20 27 27 H 1.48495 * 109.46936 * 329.99780 * 24 22 20 28 28 H 1.08998 * 109.47222 * 263.42230 * 1 2 3 29 29 H 1.09006 * 109.46943 * 23.42137 * 1 2 3 30 30 H 1.09000 * 109.47581 * 143.41801 * 1 2 3 31 31 H 1.07997 * 119.95495 * 0.02562 * 3 2 1 32 32 H 1.08002 * 125.98939 * 359.97083 * 6 5 4 33 33 H 1.07997 * 125.49131 * 179.72338 * 8 7 6 34 34 H 1.08009 * 119.96206 * 179.97438 * 10 4 3 35 35 H 1.08000 * 120.03915 * 180.02562 * 11 10 4 36 36 H 0.96998 * 119.99637 * 0.02562 * 15 13 12 37 37 H 1.09002 * 109.47271 * 300.00309 * 16 15 13 38 38 H 1.09004 * 109.47113 * 60.00439 * 16 15 13 39 39 H 1.09004 * 109.46734 * 60.00074 * 18 17 16 40 40 H 1.08993 * 109.47258 * 179.97438 * 18 17 16 41 41 H 1.08996 * 109.46949 * 299.99986 * 18 17 16 42 42 H 1.08998 * 109.47227 * 60.00459 * 19 17 16 43 43 H 1.09003 * 109.47072 * 179.97438 * 19 17 16 44 44 H 1.09001 * 109.47031 * 299.99392 * 19 17 16 45 45 H 0.96996 * 120.00627 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1924 0.0000 4 6 3.5868 1.1932 -0.0005 5 7 4.2838 2.4059 -0.0011 6 6 5.6218 2.5693 0.0037 7 7 5.8729 3.8531 -0.0024 8 6 4.7292 4.5378 -0.0015 9 7 3.7290 3.6961 -0.0007 10 6 4.2862 -0.0087 -0.0016 11 6 3.6034 -1.2047 -0.0016 12 6 2.2062 -1.2093 -0.0005 13 6 1.4704 -2.4896 0.0056 14 8 0.2601 -2.4948 0.1212 15 7 2.1405 -3.6526 -0.1171 16 6 1.4104 -4.9227 -0.1116 17 6 2.3995 -6.0801 -0.2638 18 6 3.1571 -5.9331 -1.5849 19 6 3.3933 -6.0580 0.8993 20 6 1.6485 -7.3867 -0.2588 21 1 0.5733 -7.3910 -0.1575 22 6 2.3341 -8.5763 -0.3834 23 7 3.6435 -8.5711 -0.5061 24 14 1.4031 -10.1958 -0.3778 25 1 1.0256 -10.5546 -1.7685 26 1 2.2669 -11.2614 0.1911 27 1 0.1768 -10.0590 0.4484 28 1 -0.3633 -0.1177 1.0209 29 1 -0.3633 0.9431 -0.4085 30 1 -0.3634 -0.8252 -0.6124 31 1 1.6567 2.1277 0.0004 32 1 6.3577 1.7788 0.0091 33 1 4.6429 5.6143 -0.0014 34 1 5.3663 -0.0044 -0.0024 35 1 4.1472 -2.1377 -0.0020 36 1 3.1061 -3.6485 -0.2091 37 1 0.8710 -5.0277 0.8298 38 1 0.7021 -4.9383 -0.9400 39 1 3.7003 -4.9881 -1.5890 40 1 3.8620 -6.7573 -1.6932 41 1 2.4491 -5.9489 -2.4135 42 1 2.8536 -6.1628 1.8404 43 1 4.0977 -6.8828 0.7911 44 1 3.9365 -5.1130 0.8951 45 1 4.1258 -9.4080 -0.5941 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457999284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:01:44 Heat of formation + Delta-G solvation = 68.220095 kcal Electronic energy + Delta-G solvation = -27117.776758 eV Core-core repulsion = 23329.767462 eV Total energy + Delta-G solvation = -3788.009297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.38445 -41.47207 -39.70383 -38.10040 -35.48026 -35.22976 -33.62747 -32.72212 -32.26247 -30.94693 -28.42036 -27.53333 -27.41587 -26.72653 -25.38509 -23.99531 -22.88380 -21.98575 -21.46830 -20.55752 -19.12728 -18.92741 -17.75437 -17.12026 -16.95181 -16.67763 -16.55149 -16.36205 -15.90597 -15.71719 -15.20913 -14.92537 -14.80209 -14.67346 -14.23806 -14.15752 -13.96265 -13.85178 -13.42972 -13.42271 -13.17445 -13.07663 -12.97909 -12.66175 -12.58091 -12.22693 -12.16461 -12.11898 -11.81366 -11.46077 -11.24063 -11.21450 -11.00502 -10.73476 -10.61851 -10.38091 -10.02984 -9.95864 -9.45913 -8.01065 -6.16004 -0.68353 0.16401 0.70588 1.08976 1.42965 1.46601 1.53985 1.79719 1.91456 2.25237 2.49599 2.69288 3.22855 3.25710 3.34929 3.63851 3.69987 3.82998 3.88912 4.05870 4.24682 4.40223 4.44953 4.54018 4.64937 4.72824 4.75445 4.78760 4.92588 4.96408 5.02193 5.08065 5.08220 5.16301 5.22445 5.24782 5.30971 5.37436 5.46307 5.52453 5.62169 5.69664 5.70217 5.90897 6.18695 6.23950 6.45660 6.64679 6.88064 6.91047 7.27317 7.51563 8.97650 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025175 B = 0.002363 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.949694 B =11845.480194 C =12756.826134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.010 4.010 3 C -0.130 4.130 4 C 0.170 3.830 5 N -0.342 5.342 6 C 0.272 3.728 7 N -0.561 5.561 8 C 0.208 3.792 9 N -0.348 5.348 10 C -0.132 4.132 11 C -0.048 4.048 12 C -0.153 4.153 13 C 0.545 3.455 14 O -0.572 6.572 15 N -0.703 5.703 16 C 0.148 3.852 17 C 0.051 3.949 18 C -0.122 4.122 19 C -0.122 4.122 20 C -0.527 4.527 21 H 0.044 0.956 22 C 0.029 3.971 23 N -0.898 5.898 24 Si 0.942 3.058 25 H -0.280 1.280 26 H -0.283 1.283 27 H -0.277 1.277 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.141 0.859 32 H 0.267 0.733 33 H 0.252 0.748 34 H 0.182 0.818 35 H 0.162 0.838 36 H 0.408 0.592 37 H 0.041 0.959 38 H 0.040 0.960 39 H 0.039 0.961 40 H 0.063 0.937 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.509 21.545 0.666 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.012 4.012 3 C -0.150 4.150 4 C 0.077 3.923 5 N -0.125 5.125 6 C -0.022 4.022 7 N -0.287 5.287 8 C -0.093 4.093 9 N -0.173 5.173 10 C -0.152 4.152 11 C -0.068 4.068 12 C -0.157 4.157 13 C 0.334 3.666 14 O -0.454 6.454 15 N -0.355 5.355 16 C 0.025 3.975 17 C 0.050 3.950 18 C -0.180 4.180 19 C -0.180 4.180 20 C -0.565 4.565 21 H 0.062 0.938 22 C -0.171 4.171 23 N -0.536 5.536 24 Si 0.769 3.231 25 H -0.206 1.206 26 H -0.209 1.209 27 H -0.202 1.202 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.159 0.841 32 H 0.282 0.718 33 H 0.268 0.732 34 H 0.199 0.801 35 H 0.179 0.821 36 H 0.247 0.753 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.082 0.918 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.082 0.918 44 H 0.059 0.941 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.393 21.769 0.721 22.438 hybrid contribution -0.379 -1.366 -0.030 1.418 sum 5.013 20.402 0.691 21.021 Atomic orbital electron populations 1.21020 0.89700 1.03259 1.03372 1.19934 0.97230 0.90778 0.93269 1.20718 0.92088 0.98426 1.03807 1.17869 0.91581 0.82388 1.00499 1.47764 1.06429 1.04632 1.53719 1.27189 0.84935 0.96723 0.93342 1.70705 1.29633 1.03203 1.25181 1.26870 0.84368 1.02593 0.95519 1.78130 1.23930 0.87702 1.27584 1.21045 1.02325 0.88342 1.03503 1.21404 0.91721 0.99487 0.94140 1.19912 0.94771 0.92301 1.08674 1.18597 0.87015 0.84469 0.76495 1.90703 1.15271 1.87723 1.51725 1.46037 1.11563 1.05422 1.72456 1.21304 0.94834 0.82226 0.99180 1.18366 0.92263 0.90816 0.93543 1.21687 0.99653 0.99850 0.96796 1.21687 0.99497 1.00084 0.96726 1.21263 0.93113 0.91746 1.50411 0.93807 1.25411 0.95628 1.01214 0.94835 1.69887 1.06710 1.26907 1.50121 0.85812 0.78735 0.80553 0.78002 1.20620 1.20902 1.20199 0.90899 0.90498 0.90373 0.84129 0.71792 0.73226 0.80123 0.82103 0.75348 0.94096 0.94119 0.94164 0.91849 0.96394 0.96336 0.91842 0.94076 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.91 8.72 71.24 0.62 -2.29 16 2 C -0.01 -0.25 5.91 -19.63 -0.12 -0.36 16 3 C -0.13 -2.74 9.29 22.34 0.21 -2.53 16 4 C 0.17 3.03 6.70 38.24 0.26 3.28 16 5 N -0.34 -5.99 3.81 -191.17 -0.73 -6.72 16 6 C 0.27 3.50 11.97 180.25 2.16 5.66 16 7 N -0.56 -9.35 11.19 -203.69 -2.28 -11.63 16 8 C 0.21 3.29 13.03 180.74 2.35 5.65 16 9 N -0.35 -6.98 12.03 -61.21 -0.74 -7.72 16 10 C -0.13 -1.72 9.45 22.34 0.21 -1.51 16 11 C -0.05 -0.83 9.52 22.50 0.21 -0.61 16 12 C -0.15 -3.77 5.88 -20.08 -0.12 -3.89 16 13 C 0.55 17.57 7.70 86.74 0.67 18.24 16 14 O -0.57 -22.24 13.33 -3.97 -0.05 -22.29 16 15 N -0.70 -22.52 4.91 -466.12 -2.29 -24.80 16 16 C 0.15 5.98 4.50 86.38 0.39 6.37 16 17 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 18 C -0.12 -5.13 8.08 71.98 0.58 -4.54 16 19 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16 20 C -0.53 -27.03 8.01 25.60 0.21 -26.82 16 21 H 0.04 2.31 7.74 -2.91 -0.02 2.28 16 22 C 0.03 1.49 5.15 84.65 0.44 1.92 16 23 N -0.90 -46.43 9.35 21.44 0.20 -46.23 16 24 Si 0.94 41.80 29.54 68.60 2.03 43.83 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 27 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 28 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.08 1.53 8.04 -2.38 -0.02 1.51 16 30 H 0.08 2.34 5.86 -2.39 -0.01 2.33 16 31 H 0.14 2.94 7.72 -2.91 -0.02 2.92 16 32 H 0.27 0.61 7.08 -2.91 -0.02 0.59 16 33 H 0.25 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.18 0.74 6.79 -2.91 -0.02 0.72 16 35 H 0.16 2.10 6.44 -2.91 -0.02 2.08 16 36 H 0.41 10.86 4.22 -92.71 -0.39 10.47 16 37 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 40 H 0.06 2.99 6.07 -2.39 -0.01 2.97 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 44 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 45 H 0.26 13.00 8.31 -92.71 -0.77 12.23 16 Total: -1.00 -67.13 364.78 5.40 -61.72 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.64 Total: 17.60 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 8.62 Total: -3.75 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -5.83 Total: -97.10 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.05 Total: -22.29 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -67.13 5.40 -61.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457999284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.944 kcal (2) G-P(sol) polarization free energy of solvation -67.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds