Wall clock time and date at job start Tue Mar 31 2020 15:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39061 * 119.35367 * 2 1 4 4 C 1.35707 * 122.67455 * 179.74282 * 3 2 1 5 5 C 1.41015 * 120.59386 * 0.25658 * 4 3 2 6 6 N 1.32147 * 134.70639 * 179.97438 * 5 4 3 7 7 N 1.39983 * 108.88955 * 180.02562 * 6 5 4 8 8 H 0.97003 * 125.06068 * 180.02562 * 7 6 5 9 9 C 1.34242 * 109.87462 * 0.02562 * 7 6 5 10 10 C 1.37570 * 107.92860 * 359.97438 * 9 7 6 11 11 C 1.38464 * 119.36060 * 180.23099 * 2 1 3 12 12 C 1.47293 * 120.74202 * 0.02562 * 11 2 1 13 13 O 1.21632 * 119.99745 * 267.26966 * 12 11 2 14 14 N 1.34773 * 120.00294 * 87.26728 * 12 11 2 15 15 C 1.48210 * 119.97005 * 5.35934 * 14 12 11 16 16 C 1.47717 * 110.06958 * 102.59288 * 15 14 12 17 17 C 1.53795 * 111.83102 * 58.36784 * 16 15 14 18 18 N 1.43462 * 107.96320 * 281.59955 * 17 16 15 19 19 C 1.36935 * 118.94093 * 273.63521 * 18 17 16 20 20 H 1.08003 * 120.00024 * 23.16600 * 19 18 17 21 21 C 1.38812 * 119.99866 * 203.16493 * 19 18 17 22 22 N 1.31615 * 120.00095 * 17.74467 * 21 19 18 23 23 Si 1.86806 * 119.99916 * 197.73997 * 21 19 18 24 24 H 1.48499 * 109.47042 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47051 * 120.00311 * 23 21 19 26 26 H 1.48492 * 109.47249 * 239.99998 * 23 21 19 27 27 C 1.48857 * 122.11825 * 93.65323 * 18 17 16 28 28 C 1.43620 * 119.97076 * 185.63980 * 14 12 11 29 29 H 1.09002 * 109.46894 * 95.43123 * 1 2 3 30 30 H 1.09003 * 109.46621 * 215.42809 * 1 2 3 31 31 H 1.08997 * 109.47334 * 335.43255 * 1 2 3 32 32 H 1.08000 * 118.66317 * 0.02606 * 3 2 1 33 33 H 1.07995 * 119.70378 * 180.28411 * 4 3 2 34 34 H 1.08003 * 126.03270 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.32798 * 222.78671 * 15 14 12 36 36 H 1.09001 * 109.32266 * 342.24657 * 15 14 12 37 37 H 1.08995 * 109.06266 * 297.73355 * 16 15 14 38 38 H 1.08994 * 108.89620 * 178.89287 * 16 15 14 39 39 H 1.09005 * 109.76412 * 161.98379 * 17 16 15 40 40 H 1.09002 * 109.81053 * 41.24302 * 17 16 15 41 41 H 0.97001 * 119.99942 * 180.02562 * 22 21 19 42 42 H 1.08999 * 109.47978 * 200.61865 * 27 18 17 43 43 H 1.08997 * 109.49083 * 80.59343 * 27 18 17 44 44 H 1.09000 * 108.87495 * 31.41693 * 28 14 12 45 45 H 1.09000 * 108.87413 * 149.95789 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2121 0.0000 4 6 3.5434 1.2907 0.0051 5 6 4.3302 0.1205 0.0053 6 7 5.6283 -0.1270 0.0091 7 7 5.8255 -1.5128 0.0064 8 1 6.6901 -1.9527 0.0085 9 6 4.6400 -2.1425 0.0003 10 6 3.6520 -1.1852 -0.0005 11 6 2.1858 -1.2068 -0.0049 12 6 1.4517 -2.4837 -0.0106 13 8 1.1916 -3.0403 1.0392 14 7 1.0680 -3.0352 -1.1789 15 6 1.4866 -2.4203 -2.4608 16 6 2.5966 -3.1929 -3.0550 17 6 2.2053 -4.6599 -3.3003 18 7 2.2750 -5.3521 -2.0456 19 6 3.4742 -5.8776 -1.6445 20 1 4.3975 -5.4771 -2.0365 21 6 3.5032 -6.9250 -0.7340 22 7 2.4200 -7.6414 -0.5203 23 14 5.0798 -7.3178 0.1879 24 1 6.1457 -6.3716 -0.2289 25 1 4.8451 -7.1863 1.6483 26 1 5.5016 -8.7073 -0.1225 27 6 1.0856 -5.5179 -1.1660 28 6 0.2487 -4.2148 -1.1806 29 1 -0.3633 -0.0973 -1.0231 30 1 -0.3633 -0.8374 0.5958 31 1 -0.3634 0.9346 0.4272 32 1 1.6166 2.1281 0.0004 33 1 4.0233 2.2582 0.0095 34 1 4.4885 -3.2119 -0.0034 35 1 0.6420 -2.4117 -3.1496 36 1 1.8117 -1.3957 -2.2801 37 1 3.4527 -3.1619 -2.3811 38 1 2.8757 -2.7365 -4.0046 39 1 2.8979 -5.1124 -4.0099 40 1 1.1898 -4.7106 -3.6932 41 1 2.4402 -8.3731 0.1162 42 1 1.4130 -5.7283 -0.1479 43 1 0.4765 -6.3452 -1.5302 44 1 -0.3943 -4.1989 -0.3006 45 1 -0.3763 -4.2088 -2.0736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981505859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:17 Heat of formation + Delta-G solvation = 95.426568 kcal Electronic energy + Delta-G solvation = -29830.317340 eV Core-core repulsion = 26043.487804 eV Total energy + Delta-G solvation = -3786.829535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.17100 -39.67965 -37.41424 -36.68476 -34.33271 -32.66367 -32.30590 -31.20679 -30.62403 -29.93212 -27.85911 -26.51473 -25.43827 -24.24574 -23.54735 -22.59141 -20.97544 -20.80230 -19.71424 -18.41712 -18.09264 -17.06731 -16.68415 -15.95035 -15.77571 -15.33425 -14.97134 -14.80794 -14.69555 -14.09286 -13.80067 -13.54465 -13.42737 -13.20855 -13.14459 -12.95215 -12.46396 -12.29557 -12.18425 -11.84995 -11.60136 -11.47949 -11.39751 -11.31091 -11.00445 -10.82269 -10.63580 -10.56167 -10.35119 -10.20347 -10.00012 -9.81796 -9.73995 -9.28510 -8.67105 -8.47086 -8.03522 -7.50665 -6.73766 -5.81347 -3.20632 0.54072 1.86787 2.41051 2.74609 3.04127 3.32066 3.34885 3.41718 3.52413 3.79640 4.29321 4.45768 4.65365 4.89368 4.98669 5.18570 5.21185 5.33416 5.40620 5.49247 5.52570 5.61229 5.66352 5.66884 5.69233 5.80043 5.87497 5.98876 6.08876 6.16775 6.20535 6.38633 6.39518 6.41897 6.42867 6.46807 6.60925 6.75415 6.81742 6.96224 7.02268 7.14958 7.44842 7.61786 7.62539 7.75964 7.91090 8.41573 8.66444 9.18357 9.88178 10.33778 11.26775 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.005791 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.736531 B = 4834.300884 C = 5945.100609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.071 4.071 4 C -0.095 4.095 5 C 0.103 3.897 6 N -0.309 5.309 7 N -0.429 5.429 8 H 0.445 0.555 9 C 0.107 3.893 10 C -0.186 4.186 11 C -0.026 4.026 12 C 0.562 3.438 13 O -0.533 6.533 14 N -0.574 5.574 15 C 0.124 3.876 16 C -0.170 4.170 17 C 0.163 3.837 18 N -0.590 5.590 19 C -0.257 4.257 20 H 0.064 0.936 21 C 0.007 3.993 22 N -0.899 5.899 23 Si 0.892 3.108 24 H -0.281 1.281 25 H -0.288 1.288 26 H -0.290 1.290 27 C 0.167 3.833 28 C 0.089 3.911 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.195 0.805 35 H 0.065 0.935 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.034 0.966 41 H 0.253 0.747 42 H 0.080 0.920 43 H 0.038 0.962 44 H 0.070 0.930 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.884 15.647 -3.074 16.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.094 4.094 4 C -0.116 4.116 5 C -0.052 4.052 6 N -0.137 5.137 7 N -0.130 5.130 8 H 0.289 0.711 9 C -0.049 4.049 10 C -0.196 4.196 11 C -0.031 4.031 12 C 0.349 3.651 13 O -0.410 6.410 14 N -0.305 5.305 15 C 0.002 3.998 16 C -0.211 4.211 17 C 0.034 3.966 18 N -0.311 5.311 19 C -0.387 4.387 20 H 0.081 0.919 21 C -0.192 4.192 22 N -0.544 5.544 23 Si 0.722 3.278 24 H -0.206 1.206 25 H -0.215 1.215 26 H -0.217 1.217 27 C 0.041 3.959 28 C -0.035 4.035 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.212 0.788 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.869 15.709 -2.422 15.919 hybrid contribution 0.717 -1.047 0.467 1.352 sum -0.152 14.662 -1.955 14.793 Atomic orbital electron populations 1.20788 0.90821 1.02954 1.02382 1.19505 0.95867 0.91242 1.03568 1.20318 0.93571 0.97041 0.98466 1.19789 0.92479 0.95166 1.04142 1.20836 0.90477 0.94394 0.99465 1.77615 1.15469 0.90241 1.30398 1.46318 1.08429 1.05250 1.52991 0.71090 1.22886 0.84887 0.99700 0.97399 1.20082 0.92202 0.92105 1.15249 1.20092 0.90344 0.93123 0.99560 1.18056 0.78948 0.84098 0.84005 1.90824 1.55859 1.62916 1.31448 1.47344 1.50940 1.26909 1.05294 1.20836 0.97886 0.96474 0.84650 1.22018 0.99037 1.00347 0.99701 1.20244 0.97919 0.89570 0.88854 1.43679 1.07483 1.63436 1.16514 1.19111 0.85043 1.11219 1.23308 0.91870 1.24909 0.96662 0.95945 1.01650 1.70032 1.27684 1.19836 1.36810 0.86409 0.83211 0.77925 0.80256 1.20611 1.21489 1.21708 1.21857 0.86950 0.90075 0.96985 1.22012 0.93548 0.87002 1.00963 0.91205 0.91393 0.91336 0.85388 0.85475 0.78796 0.91712 0.90983 0.91551 0.92749 0.93749 0.94798 0.93654 0.90156 0.94387 0.91175 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.48 36.00 0.34 -0.95 16 2 C -0.10 -1.35 5.65 -104.24 -0.59 -1.94 16 3 C -0.07 -0.82 9.44 -40.18 -0.38 -1.20 16 4 C -0.09 -1.19 10.02 -39.44 -0.40 -1.59 16 5 C 0.10 1.60 7.49 -83.07 -0.62 0.97 16 6 N -0.31 -4.78 12.71 33.24 0.42 -4.36 16 7 N -0.43 -5.96 7.20 30.75 0.22 -5.74 16 8 H 0.44 4.63 8.96 -182.68 -1.64 2.99 16 9 C 0.11 1.73 11.78 -16.74 -0.20 1.53 16 10 C -0.19 -3.11 6.35 -103.15 -0.65 -3.76 16 11 C -0.03 -0.42 3.86 -102.75 -0.40 -0.82 16 12 C 0.56 10.67 5.60 -12.58 -0.07 10.60 16 13 O -0.53 -12.25 16.71 5.25 0.09 -12.16 16 14 N -0.57 -10.03 2.45 -177.67 -0.43 -10.47 16 15 C 0.12 1.82 5.66 -5.65 -0.03 1.79 16 16 C -0.17 -2.74 5.66 -28.87 -0.16 -2.91 16 17 C 0.16 3.09 5.63 -5.24 -0.03 3.06 16 18 N -0.59 -13.59 2.54 -171.99 -0.44 -14.03 16 19 C -0.26 -6.59 9.28 -15.06 -0.14 -6.73 16 20 H 0.06 1.59 7.89 -52.48 -0.41 1.18 16 21 C 0.01 0.19 4.88 -17.43 -0.09 0.11 16 22 N -0.90 -25.50 10.98 55.49 0.61 -24.89 16 23 Si 0.89 21.12 29.59 -169.99 -5.03 16.09 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.17 3.85 5.20 -1.75 -0.01 3.85 16 28 C 0.09 1.66 5.21 -4.58 -0.02 1.64 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.92 7.25 -51.93 -0.38 0.54 16 31 H 0.07 0.61 8.00 -51.93 -0.42 0.20 16 32 H 0.13 1.03 8.02 -52.49 -0.42 0.61 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.20 3.33 8.06 -52.48 -0.42 2.90 16 35 H 0.06 0.82 8.05 -51.93 -0.42 0.40 16 36 H 0.07 1.01 6.23 -51.93 -0.32 0.68 16 37 H 0.07 1.22 7.68 -51.93 -0.40 0.82 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.87 8.02 -51.93 -0.42 0.45 16 40 H 0.03 0.60 7.59 -51.93 -0.39 0.21 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.08 2.19 6.46 -51.93 -0.34 1.85 16 43 H 0.04 0.94 8.02 -51.93 -0.42 0.52 16 44 H 0.07 1.33 7.45 -51.93 -0.39 0.94 16 45 H 0.06 0.93 7.72 -51.93 -0.40 0.53 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -32.38 362.76 -10.12 -42.51 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.58 Total: 3.90 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -3.45 Total: 3.67 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.38 Total: -59.48 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: 0.09 Total: -12.16 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.38 -10.12 -42.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981505859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.932 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds