Wall clock time and date at job start Tue Mar 31 2020 15:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39061 * 119.35367 * 2 1 4 4 C 1.35707 * 122.67455 * 179.74282 * 3 2 1 5 5 C 1.41015 * 120.59386 * 0.25658 * 4 3 2 6 6 N 1.32147 * 134.70639 * 179.97438 * 5 4 3 7 7 N 1.39983 * 108.88955 * 180.02562 * 6 5 4 8 8 H 0.97003 * 125.06068 * 180.02562 * 7 6 5 9 9 C 1.34242 * 109.87462 * 0.02562 * 7 6 5 10 10 C 1.37570 * 107.92860 * 359.97438 * 9 7 6 11 11 C 1.38464 * 119.36060 * 180.23099 * 2 1 3 12 12 C 1.47293 * 120.74202 * 0.02562 * 11 2 1 13 13 O 1.21632 * 119.99745 * 267.26966 * 12 11 2 14 14 N 1.34773 * 120.00294 * 87.26728 * 12 11 2 15 15 C 1.48210 * 119.97005 * 5.35934 * 14 12 11 16 16 C 1.47717 * 110.06958 * 102.59288 * 15 14 12 17 17 C 1.53795 * 111.83102 * 58.36784 * 16 15 14 18 18 N 1.43462 * 107.96320 * 281.59955 * 17 16 15 19 19 C 1.36935 * 118.94093 * 273.63521 * 18 17 16 20 20 H 1.08003 * 120.00024 * 23.16600 * 19 18 17 21 21 C 1.38812 * 119.99866 * 203.16493 * 19 18 17 22 22 N 1.31615 * 120.00095 * 17.74467 * 21 19 18 23 23 Si 1.86806 * 119.99916 * 197.73997 * 21 19 18 24 24 H 1.48499 * 109.47042 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47051 * 120.00311 * 23 21 19 26 26 H 1.48492 * 109.47249 * 239.99998 * 23 21 19 27 27 C 1.48857 * 122.11825 * 93.65323 * 18 17 16 28 28 C 1.43620 * 119.97076 * 185.63980 * 14 12 11 29 29 H 1.09002 * 109.46894 * 95.43123 * 1 2 3 30 30 H 1.09003 * 109.46621 * 215.42809 * 1 2 3 31 31 H 1.08997 * 109.47334 * 335.43255 * 1 2 3 32 32 H 1.08000 * 118.66317 * 0.02606 * 3 2 1 33 33 H 1.07995 * 119.70378 * 180.28411 * 4 3 2 34 34 H 1.08003 * 126.03270 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.32798 * 222.78671 * 15 14 12 36 36 H 1.09001 * 109.32266 * 342.24657 * 15 14 12 37 37 H 1.08995 * 109.06266 * 297.73355 * 16 15 14 38 38 H 1.08994 * 108.89620 * 178.89287 * 16 15 14 39 39 H 1.09005 * 109.76412 * 161.98379 * 17 16 15 40 40 H 1.09002 * 109.81053 * 41.24302 * 17 16 15 41 41 H 0.97001 * 119.99942 * 180.02562 * 22 21 19 42 42 H 1.08999 * 109.47978 * 200.61865 * 27 18 17 43 43 H 1.08997 * 109.49083 * 80.59343 * 27 18 17 44 44 H 1.09000 * 108.87495 * 31.41693 * 28 14 12 45 45 H 1.09000 * 108.87413 * 149.95789 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1886 1.2121 0.0000 4 6 3.5434 1.2907 0.0051 5 6 4.3302 0.1205 0.0053 6 7 5.6283 -0.1270 0.0091 7 7 5.8255 -1.5128 0.0064 8 1 6.6901 -1.9527 0.0085 9 6 4.6400 -2.1425 0.0003 10 6 3.6520 -1.1852 -0.0005 11 6 2.1858 -1.2068 -0.0049 12 6 1.4517 -2.4837 -0.0106 13 8 1.1916 -3.0403 1.0392 14 7 1.0680 -3.0352 -1.1789 15 6 1.4866 -2.4203 -2.4608 16 6 2.5966 -3.1929 -3.0550 17 6 2.2053 -4.6599 -3.3003 18 7 2.2750 -5.3521 -2.0456 19 6 3.4742 -5.8776 -1.6445 20 1 4.3975 -5.4771 -2.0365 21 6 3.5032 -6.9250 -0.7340 22 7 2.4200 -7.6414 -0.5203 23 14 5.0798 -7.3178 0.1879 24 1 6.1457 -6.3716 -0.2289 25 1 4.8451 -7.1863 1.6483 26 1 5.5016 -8.7073 -0.1225 27 6 1.0856 -5.5179 -1.1660 28 6 0.2487 -4.2148 -1.1806 29 1 -0.3633 -0.0973 -1.0231 30 1 -0.3633 -0.8374 0.5958 31 1 -0.3634 0.9346 0.4272 32 1 1.6166 2.1281 0.0004 33 1 4.0233 2.2582 0.0095 34 1 4.4885 -3.2119 -0.0034 35 1 0.6420 -2.4117 -3.1496 36 1 1.8117 -1.3957 -2.2801 37 1 3.4527 -3.1619 -2.3811 38 1 2.8757 -2.7365 -4.0046 39 1 2.8979 -5.1124 -4.0099 40 1 1.1898 -4.7106 -3.6932 41 1 2.4402 -8.3731 0.1162 42 1 1.4130 -5.7283 -0.1479 43 1 0.4765 -6.3452 -1.5302 44 1 -0.3943 -4.1989 -0.3006 45 1 -0.3763 -4.2088 -2.0736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981505859.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:16 Heat of formation + Delta-G solvation = 75.218447 kcal Electronic energy + Delta-G solvation = -29831.193630 eV Core-core repulsion = 26043.487804 eV Total energy + Delta-G solvation = -3787.705825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.32242 -41.07827 -38.75716 -38.03786 -36.02855 -33.92007 -33.76916 -32.79977 -31.92912 -31.01522 -29.43631 -27.73176 -27.05036 -25.63692 -24.97030 -23.97628 -22.10106 -22.05098 -21.41893 -19.74954 -19.21028 -18.72496 -18.13051 -17.47478 -17.14753 -16.66042 -16.30097 -16.08260 -15.86870 -15.69249 -15.50178 -15.03536 -14.68855 -14.64065 -14.32909 -14.09706 -13.93027 -13.86768 -13.32447 -13.12780 -13.08791 -12.89647 -12.81072 -12.56641 -12.43664 -12.34019 -12.26529 -12.07829 -11.92784 -11.73840 -11.65803 -11.41104 -11.16895 -10.71762 -10.48913 -9.72935 -9.54312 -8.68993 -8.61028 -7.85469 -5.25224 -0.55322 0.80458 1.23575 1.37021 1.39591 1.47345 1.53707 1.74489 2.21405 2.48505 2.71149 3.20147 3.29382 3.49649 3.72718 3.79494 3.95596 4.07794 4.14858 4.28808 4.34118 4.39645 4.42563 4.55175 4.58145 4.63126 4.80041 4.80897 4.84336 4.85975 4.93131 4.97536 5.04009 5.22576 5.26873 5.32610 5.38563 5.42302 5.54850 5.58309 5.59591 5.72957 5.82304 5.87602 6.11332 6.39241 6.48902 6.50018 7.16662 7.24564 7.96313 8.37524 9.20169 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012465 B = 0.005791 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.736531 B = 4834.300884 C = 5945.100609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.077 4.077 3 C -0.065 4.065 4 C -0.090 4.090 5 C 0.090 3.910 6 N -0.316 5.316 7 N -0.417 5.417 8 H 0.456 0.544 9 C 0.087 3.913 10 C -0.199 4.199 11 C -0.069 4.069 12 C 0.564 3.436 13 O -0.589 6.589 14 N -0.572 5.572 15 C 0.123 3.877 16 C -0.156 4.156 17 C 0.156 3.844 18 N -0.600 5.600 19 C -0.246 4.246 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.944 3.056 24 H -0.258 1.258 25 H -0.304 1.304 26 H -0.294 1.294 27 C 0.178 3.822 28 C 0.102 3.898 29 H 0.089 0.911 30 H 0.040 0.960 31 H 0.101 0.899 32 H 0.175 0.825 33 H 0.158 0.842 34 H 0.173 0.827 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.054 0.946 41 H 0.244 0.756 42 H 0.029 0.971 43 H 0.015 0.985 44 H 0.061 0.939 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.201 19.921 -4.920 20.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.079 4.079 3 C -0.087 4.087 4 C -0.111 4.111 5 C -0.064 4.064 6 N -0.145 5.145 7 N -0.120 5.120 8 H 0.303 0.697 9 C -0.070 4.070 10 C -0.209 4.209 11 C -0.074 4.074 12 C 0.353 3.647 13 O -0.470 6.470 14 N -0.301 5.301 15 C 0.002 3.998 16 C -0.197 4.197 17 C 0.029 3.971 18 N -0.323 5.323 19 C -0.377 4.377 20 H 0.084 0.916 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.773 3.227 24 H -0.182 1.182 25 H -0.232 1.232 26 H -0.221 1.221 27 C 0.052 3.948 28 C -0.023 4.023 29 H 0.107 0.893 30 H 0.059 0.941 31 H 0.120 0.880 32 H 0.193 0.807 33 H 0.175 0.825 34 H 0.190 0.810 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.106 0.894 39 H 0.056 0.944 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.033 0.967 44 H 0.079 0.921 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.152 20.026 -4.341 20.523 hybrid contribution 0.787 -2.265 0.980 2.590 sum -0.364 17.761 -3.361 18.080 Atomic orbital electron populations 1.20885 0.89225 1.03571 1.03330 1.19961 0.97079 0.90929 0.99907 1.20756 0.93392 0.97712 0.96873 1.20269 0.92890 0.95339 1.02600 1.21311 0.90340 0.94950 0.99848 1.77531 1.15884 0.90684 1.30414 1.46252 1.08466 1.04816 1.52465 0.69673 1.22580 0.85974 0.98897 0.99511 1.20273 0.92485 0.92884 1.15304 1.19948 0.90242 0.92814 1.04403 1.18528 0.78029 0.84723 0.83422 1.90782 1.58034 1.64715 1.33483 1.47468 1.50275 1.26093 1.06276 1.21060 0.98582 0.96609 0.83560 1.21805 0.98610 0.98389 1.00868 1.20476 0.99038 0.90745 0.86823 1.43861 1.06579 1.63673 1.18157 1.19392 0.86266 1.09908 1.22111 0.91567 1.25552 0.99057 0.96717 1.03217 1.70183 1.29478 1.20645 1.37749 0.85549 0.81165 0.77792 0.78146 1.18222 1.23154 1.22105 1.21504 0.87123 0.92050 0.94076 1.21718 0.92925 0.85401 1.02284 0.89274 0.94115 0.88031 0.80735 0.82475 0.80977 0.88259 0.89430 0.94242 0.89369 0.94408 0.92797 0.94664 0.95260 0.96711 0.92054 0.88814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.17 9.48 71.23 0.68 -1.50 16 2 C -0.08 -1.82 5.65 -19.61 -0.11 -1.93 16 3 C -0.07 -1.17 9.44 21.88 0.21 -0.96 16 4 C -0.09 -1.90 10.02 22.36 0.22 -1.67 16 5 C 0.09 2.60 7.49 42.11 0.32 2.91 16 6 N -0.32 -9.35 12.71 -48.75 -0.62 -9.97 16 7 N -0.42 -11.54 7.20 -56.62 -0.41 -11.94 16 8 H 0.46 9.50 8.96 -213.39 -1.91 7.58 16 9 C 0.09 2.87 11.78 84.17 0.99 3.86 16 10 C -0.20 -6.56 6.35 -18.91 -0.12 -6.68 16 11 C -0.07 -2.20 3.86 -18.65 -0.07 -2.27 16 12 C 0.56 21.70 5.60 86.63 0.49 22.18 16 13 O -0.59 -28.54 16.71 -4.13 -0.07 -28.61 16 14 N -0.57 -19.55 2.45 -834.26 -2.04 -21.59 16 15 C 0.12 3.22 5.66 84.40 0.48 3.70 16 16 C -0.16 -4.67 5.66 29.21 0.17 -4.51 16 17 C 0.16 5.72 5.63 87.21 0.49 6.21 16 18 N -0.60 -28.23 2.54 -698.07 -1.77 -30.01 16 19 C -0.25 -12.99 9.28 84.03 0.78 -12.21 16 20 H 0.07 3.39 7.89 -2.91 -0.02 3.37 16 21 C -0.05 -2.82 4.88 84.86 0.41 -2.41 16 22 N -0.93 -56.06 10.98 21.65 0.24 -55.82 16 23 Si 0.94 45.36 29.59 68.60 2.03 47.39 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 26 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 27 C 0.18 8.63 5.20 86.56 0.45 9.08 16 28 C 0.10 3.80 5.21 87.55 0.46 4.26 16 29 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.04 1.03 7.25 -2.39 -0.02 1.01 16 31 H 0.10 1.28 8.00 -2.39 -0.02 1.26 16 32 H 0.18 1.55 8.02 -2.91 -0.02 1.53 16 33 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.17 6.40 8.06 -2.91 -0.02 6.37 16 35 H 0.10 2.00 8.05 -2.39 -0.02 1.98 16 36 H 0.09 2.12 6.23 -2.39 -0.01 2.10 16 37 H 0.04 1.42 7.68 -2.39 -0.02 1.40 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.04 1.43 8.02 -2.38 -0.02 1.41 16 40 H 0.05 1.77 7.59 -2.39 -0.02 1.75 16 41 H 0.24 14.48 8.31 -92.71 -0.77 13.70 16 42 H 0.03 1.70 6.46 -2.39 -0.02 1.68 16 43 H 0.01 0.77 8.02 -2.39 -0.02 0.75 16 44 H 0.06 2.40 7.45 -2.39 -0.02 2.38 16 45 H 0.09 2.81 7.72 -2.39 -0.02 2.80 16 Total: -1.00 -76.46 362.76 2.29 -74.17 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -0.89 Total: 18.31 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: 5.83 Total: 18.07 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -4.61 Total: -129.33 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.07 Total: -28.61 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -76.46 2.29 -74.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981505859.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.389 kcal (2) G-P(sol) polarization free energy of solvation -76.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds