Wall clock time and date at job start Tue Mar 31 2020 15:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38055 * 126.29318 * 2 1 4 4 C 1.47412 * 126.41247 * 359.95981 * 3 2 1 5 5 O 1.21620 * 120.00261 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00071 * 180.02562 * 4 3 2 7 7 C 1.40107 * 120.00464 * 174.99165 * 6 4 3 8 8 C 1.38862 * 119.99445 * 325.06586 * 7 6 4 9 9 C 1.38061 * 119.99994 * 179.72244 * 8 7 6 10 10 C 1.38896 * 119.99793 * 0.54535 * 9 8 7 11 11 N 1.39894 * 120.00360 * 179.69983 * 10 9 8 12 12 C 1.46507 * 120.00108 * 180.21703 * 11 10 9 13 13 C 1.46502 * 120.00370 * 0.21825 * 11 10 9 14 14 C 1.38887 * 119.99001 * 359.73100 * 10 9 8 15 15 C 1.38064 * 120.00127 * 359.97438 * 14 10 9 16 16 C 1.41296 * 107.16908 * 179.97438 * 3 2 1 17 17 N 1.30441 * 108.02167 * 359.97438 * 16 3 2 18 18 N 1.34264 * 126.29182 * 179.68082 * 2 1 3 19 19 C 1.46503 * 125.75626 * 359.97438 * 18 2 1 20 20 C 1.50698 * 109.47226 * 89.99663 * 19 18 2 21 21 H 1.07999 * 119.99990 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99749 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00322 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99828 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47466 * 359.97438 * 24 22 20 26 26 H 1.48502 * 109.47260 * 120.00162 * 24 22 20 27 27 H 1.48508 * 109.47104 * 239.99747 * 24 22 20 28 28 H 1.09001 * 109.47118 * 90.02837 * 1 2 3 29 29 H 1.08996 * 109.47566 * 210.02595 * 1 2 3 30 30 H 1.08999 * 109.47319 * 330.03353 * 1 2 3 31 31 H 0.97002 * 119.99601 * 354.99305 * 6 4 3 32 32 H 1.07989 * 119.99706 * 359.97438 * 8 7 6 33 33 H 1.08001 * 120.00189 * 180.25201 * 9 8 7 34 34 H 1.09000 * 109.46580 * 90.00249 * 12 11 10 35 35 H 1.08996 * 109.47218 * 210.00098 * 12 11 10 36 36 H 1.09003 * 109.47022 * 330.00384 * 12 11 10 37 37 H 1.09007 * 109.46789 * 5.24727 * 13 11 10 38 38 H 1.09001 * 109.47136 * 125.23733 * 13 11 10 39 39 H 1.08991 * 109.47693 * 245.24520 * 13 11 10 40 40 H 1.08002 * 120.00055 * 180.02562 * 14 10 9 41 41 H 1.07993 * 120.00147 * 179.97438 * 15 14 10 42 42 H 1.08000 * 125.98320 * 179.97438 * 16 3 2 43 43 H 1.09005 * 109.47012 * 209.99629 * 19 18 2 44 44 H 1.08997 * 109.46511 * 329.99424 * 19 18 2 45 45 H 0.96995 * 120.00095 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8860 2.5202 -0.0008 5 8 0.6995 2.7877 -0.0021 6 7 2.8001 3.5106 -0.0012 7 6 2.3871 4.8452 -0.1080 8 6 1.2867 5.1709 -0.8899 9 6 0.8762 6.4852 -0.9905 10 6 1.5706 7.4831 -0.3187 11 7 1.1585 8.8156 -0.4257 12 6 1.8939 9.8687 0.2791 13 6 -0.0085 9.1583 -1.2424 14 6 2.6746 7.1577 0.4586 15 6 3.0813 5.8426 0.5640 16 6 3.6592 0.6498 0.0006 17 7 3.6341 -0.6543 0.0015 18 7 2.3017 -1.0822 0.0060 19 6 1.8502 -2.4759 0.0143 20 6 1.6947 -2.9620 -1.4036 21 1 1.9103 -2.2990 -2.2284 22 6 1.2763 -4.2529 -1.6478 23 7 1.0133 -5.0600 -0.6433 24 14 1.0830 -4.8553 -3.4053 25 1 1.4381 -3.7618 -4.3453 26 1 1.9816 -6.0155 -3.6326 27 1 -0.3251 -5.2673 -3.6353 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3634 0.8903 0.5133 31 1 3.7439 3.2994 0.0723 32 1 0.7497 4.3957 -1.4159 33 1 0.0179 6.7381 -1.5954 34 1 2.6852 10.2524 -0.3649 35 1 1.2112 10.6781 0.5374 36 1 2.3325 9.4589 1.1889 37 1 -0.4762 8.2445 -1.6092 38 1 -0.7243 9.7152 -0.6378 39 1 0.3065 9.7698 -2.0879 40 1 3.2145 7.9334 0.9814 41 1 3.9400 5.5896 1.1682 42 1 4.5450 1.2676 0.0004 43 1 2.5851 -3.0928 0.5315 44 1 0.8918 -2.5441 0.5290 45 1 0.7193 -5.9683 -0.8151 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887587607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:27 Heat of formation + Delta-G solvation = 76.556266 kcal Electronic energy + Delta-G solvation = -26610.444966 eV Core-core repulsion = 22822.797153 eV Total energy + Delta-G solvation = -3787.647813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.90020 -40.03981 -38.65696 -36.35153 -34.11429 -33.74066 -32.08216 -31.29425 -31.14884 -29.22488 -28.39290 -27.29618 -26.64714 -24.74808 -23.43102 -22.73885 -22.12828 -20.87842 -19.70484 -19.08555 -17.86763 -17.16721 -16.80165 -16.51473 -15.85177 -15.31349 -15.12519 -14.92912 -14.64044 -14.50502 -14.15005 -14.02927 -13.78353 -13.41555 -13.21929 -12.85219 -12.71864 -12.64433 -12.46457 -12.40594 -12.20598 -12.19319 -12.09461 -11.78883 -11.48496 -11.12714 -11.03664 -10.91414 -10.49133 -10.37537 -10.18286 -9.92239 -9.43730 -9.07146 -8.88348 -8.72294 -8.60790 -7.98007 -7.08163 -6.34512 -4.42244 1.40370 1.49729 2.20705 2.77793 2.93237 3.15865 3.16599 3.24778 3.31315 3.56388 3.73885 4.03712 4.23798 4.64497 4.71258 4.93888 4.98105 5.02005 5.05646 5.10458 5.22337 5.29102 5.29895 5.37065 5.46040 5.48909 5.53009 5.61652 5.73627 5.88403 6.01476 6.06923 6.11868 6.17834 6.40343 6.48245 6.56132 6.62638 6.77945 6.89460 6.98153 7.08378 7.14037 7.38187 7.55215 7.69327 7.75908 7.77426 8.35372 8.55795 8.63674 9.24765 10.73748 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026051 B = 0.002177 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.572902 B =12859.015588 C =13367.743348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.168 3.832 3 C -0.334 4.334 4 C 0.603 3.397 5 O -0.541 6.541 6 N -0.675 5.675 7 C 0.105 3.895 8 C -0.070 4.070 9 C -0.179 4.179 10 C 0.193 3.807 11 N -0.643 5.643 12 C 0.097 3.903 13 C 0.091 3.909 14 C -0.180 4.180 15 C -0.101 4.101 16 C 0.058 3.942 17 N -0.294 5.294 18 N -0.313 5.313 19 C 0.250 3.750 20 C -0.539 4.539 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.406 0.594 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.049 0.951 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.176 0.824 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.513 26.163 1.952 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.031 3.969 3 C -0.349 4.349 4 C 0.395 3.605 5 O -0.419 6.419 6 N -0.320 5.320 7 C 0.009 3.991 8 C -0.090 4.090 9 C -0.202 4.202 10 C 0.092 3.908 11 N -0.357 5.357 12 C -0.047 4.047 13 C -0.052 4.052 14 C -0.202 4.202 15 C -0.122 4.122 16 C -0.129 4.129 17 N -0.114 5.114 18 N -0.090 5.090 19 C 0.133 3.867 20 C -0.578 4.578 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.206 1.206 27 H -0.205 1.205 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.241 0.759 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.140 0.860 41 H 0.141 0.859 42 H 0.193 0.807 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.240 24.997 1.983 25.106 hybrid contribution 0.059 0.172 -0.862 0.881 sum 1.300 25.168 1.121 25.227 Atomic orbital electron populations 1.20585 0.86738 1.03871 1.03974 1.21480 0.94982 0.86488 0.93970 1.19586 0.93244 0.92156 1.29935 1.17382 0.84980 0.83853 0.74278 1.90702 1.16546 1.84150 1.50459 1.43268 1.10400 1.03752 1.74546 1.17523 0.98422 0.83508 0.99613 1.20953 0.96014 0.95827 0.96232 1.20599 1.02566 0.91844 1.05163 1.17808 0.93716 0.83815 0.95422 1.46244 1.32056 1.03559 1.53798 1.21555 0.96276 0.90264 0.96585 1.21659 0.87575 1.01502 0.94478 1.20386 0.99118 0.96280 1.04464 1.20642 1.00817 0.91922 0.98835 1.23737 0.96301 0.92661 1.00175 1.77144 0.98622 1.12228 1.23407 1.49385 1.02473 1.08321 1.48793 1.19876 0.96452 0.70858 0.99503 1.21282 1.47327 0.98125 0.91022 0.91591 1.24929 0.94455 0.96038 0.98295 1.69920 1.44549 1.07296 1.30914 0.86268 0.77967 0.78865 0.83416 1.19519 1.20565 1.20543 0.89765 0.90808 0.88768 0.75897 0.84728 0.85770 0.93690 0.91879 0.91412 0.90306 0.92887 0.93291 0.85959 0.85866 0.80670 0.92461 0.92501 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.57 36.01 0.34 -1.33 16 2 C 0.17 3.40 7.01 -81.60 -0.57 2.83 16 3 C -0.33 -6.04 6.13 -105.07 -0.64 -6.68 16 4 C 0.60 10.07 7.55 -12.52 -0.09 9.97 16 5 O -0.54 -10.17 12.62 5.26 0.07 -10.10 16 6 N -0.67 -8.90 5.33 -10.79 -0.06 -8.95 16 7 C 0.10 1.37 6.25 -83.61 -0.52 0.85 16 8 C -0.07 -0.96 8.64 -39.42 -0.34 -1.30 16 9 C -0.18 -2.12 9.30 -39.40 -0.37 -2.49 16 10 C 0.19 2.10 6.56 -83.69 -0.55 1.55 16 11 N -0.64 -5.65 3.41 -187.48 -0.64 -6.29 16 12 C 0.10 0.60 10.24 59.85 0.61 1.21 16 13 C 0.09 0.62 10.62 59.85 0.64 1.26 16 14 C -0.18 -1.85 9.20 -39.41 -0.36 -2.21 16 15 C -0.10 -1.10 9.96 -39.41 -0.39 -1.49 16 16 C 0.06 1.00 11.51 -16.98 -0.20 0.81 16 17 N -0.29 -6.27 12.50 30.86 0.39 -5.89 16 18 N -0.31 -7.03 3.56 -57.77 -0.21 -7.23 16 19 C 0.25 6.20 5.97 -5.19 -0.03 6.17 16 20 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 21 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 22 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -24.52 13.29 55.43 0.74 -23.79 16 24 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.29 7.04 -51.93 -0.37 0.93 16 30 H 0.09 1.61 6.50 -51.93 -0.34 1.28 16 31 H 0.41 4.15 7.79 -40.82 -0.32 3.83 16 32 H 0.13 2.05 6.52 -52.49 -0.34 1.71 16 33 H 0.12 1.26 5.73 -52.49 -0.30 0.96 16 34 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.30 8.07 -51.93 -0.42 -0.12 16 36 H 0.07 0.40 6.19 -51.93 -0.32 0.08 16 37 H 0.08 0.54 5.32 -51.93 -0.28 0.27 16 38 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.12 0.99 6.13 -52.49 -0.32 0.67 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.18 2.12 7.51 -52.49 -0.39 1.72 16 43 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.06 1.40 7.01 -51.93 -0.36 1.03 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 373.61 15.07 5.63 5.63 Total: -1.00 -31.85 373.61 -7.85 -39.70 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -5.84 Total: 5.13 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: -2.90 Total: -3.97 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: 0.22 Total: -52.15 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.85 -7.85 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887587607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.253 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds