Wall clock time and date at job start Tue Mar 31 2020 15:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40386 * 120.22439 * 2 1 4 4 C 1.35030 * 120.44529 * 180.02562 * 3 2 1 5 5 N 1.36529 * 120.59271 * 0.02562 * 4 3 2 6 6 C 1.36253 * 132.77526 * 180.02562 * 5 4 3 7 7 N 1.30180 * 109.81778 * 179.69987 * 6 5 4 8 8 C 1.34889 * 109.73533 * 0.44927 * 7 6 5 9 9 C 1.46288 * 126.49901 * 179.81862 * 8 7 6 10 10 O 1.21773 * 120.00126 * 179.68836 * 9 8 7 11 11 N 1.34774 * 119.99800 * 359.69261 * 9 8 7 12 12 C 1.46504 * 119.99811 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.63797 * 323.31096 * 12 11 9 14 14 C 1.55155 * 110.71889 * 86.45186 * 12 11 9 15 15 C 1.54912 * 101.57968 * 154.04276 * 14 12 11 16 16 N 1.47426 * 104.83261 * 322.99067 * 15 14 12 17 17 C 1.36941 * 125.64875 * 203.86480 * 16 15 14 18 18 H 1.08001 * 120.00063 * 180.02562 * 17 16 15 19 19 C 1.38810 * 119.99930 * 0.02562 * 17 16 15 20 20 N 1.31617 * 120.00219 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00125 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46763 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47257 * 119.99870 * 21 19 17 24 24 H 1.48497 * 109.47230 * 239.99856 * 21 19 17 25 25 C 1.47024 * 108.70449 * 24.12870 * 16 15 14 26 26 H 1.09002 * 109.88101 * 239.52444 * 25 16 15 27 27 C 1.53001 * 109.88112 * 118.35785 * 25 16 15 28 28 C 1.37269 * 120.03711 * 359.97438 * 5 4 3 29 29 C 1.36336 * 120.21926 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.46845 * 269.97331 * 1 2 3 31 31 H 1.08998 * 109.47215 * 29.97118 * 1 2 3 32 32 H 1.08998 * 109.47407 * 149.97468 * 1 2 3 33 33 H 1.08003 * 119.77956 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.70070 * 180.02562 * 4 3 2 35 35 H 1.07998 * 125.09282 * 359.96980 * 6 5 4 36 36 H 0.96999 * 120.00347 * 359.97438 * 11 9 8 37 37 H 1.08997 * 111.00368 * 35.97468 * 14 12 11 38 38 H 1.08992 * 111.03872 * 272.12933 * 14 12 11 39 39 H 1.09002 * 110.36496 * 204.15483 * 15 14 12 40 40 H 1.08997 * 110.36790 * 81.83118 * 15 14 12 41 41 H 0.97004 * 120.00482 * 180.02562 * 20 19 17 42 42 H 1.08993 * 109.46793 * 61.45719 * 27 25 16 43 43 H 1.09005 * 109.46593 * 181.45282 * 27 25 16 44 44 H 1.08995 * 109.46984 * 301.45265 * 27 25 16 45 45 H 1.07997 * 120.40224 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2130 0.0000 4 6 3.5640 1.2182 -0.0005 5 7 4.2633 0.0457 -0.0016 6 6 5.5963 -0.2367 -0.0018 7 7 5.7742 -1.5263 0.0034 8 6 4.5788 -2.1511 -0.0026 9 6 4.3523 -3.5963 -0.0033 10 8 3.2162 -4.0346 -0.0033 11 7 5.4011 -4.4427 -0.0038 12 6 5.1743 -5.8901 -0.0039 13 1 4.3069 -6.1431 0.6058 14 6 5.0000 -6.4183 -1.4523 15 6 5.4522 -7.8924 -1.3023 16 7 6.5676 -7.8488 -0.3393 17 6 7.5656 -8.7802 -0.2313 18 1 8.3409 -8.6575 0.5105 19 6 7.5808 -9.8822 -1.0753 20 7 6.6363 -10.0315 -1.9797 21 14 8.9418 -11.1531 -0.9276 22 1 9.8733 -10.7568 0.1589 23 1 8.3498 -12.4781 -0.6126 24 1 9.6839 -11.2352 -2.2113 25 6 6.4275 -6.6430 0.4903 26 1 7.3083 -6.0110 0.3773 27 6 6.2520 -7.0386 1.9578 28 6 3.5947 -1.1532 -0.0016 29 6 2.1932 -1.1781 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6737 2.1484 0.0004 34 1 4.0954 2.1584 -0.0001 35 1 6.3868 0.4991 -0.0016 36 1 6.3061 -4.0937 -0.0041 37 1 5.6469 -5.8799 -2.1450 38 1 3.9584 -6.3594 -1.7677 39 1 5.7935 -8.2839 -2.2606 40 1 4.6371 -8.5013 -0.9114 41 1 6.6467 -10.8018 -2.5693 42 1 7.1349 -7.5810 2.2959 43 1 6.1230 -6.1412 2.5630 44 1 5.3732 -7.6752 2.0599 45 1 1.6634 -2.1192 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088683045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:13 Heat of formation + Delta-G solvation = 75.927709 kcal Electronic energy + Delta-G solvation = -27423.271980 eV Core-core repulsion = 23635.596911 eV Total energy + Delta-G solvation = -3787.675069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.06958 -39.35186 -38.10295 -37.32321 -34.29439 -33.85474 -31.92862 -31.46092 -30.30257 -29.95749 -28.57943 -27.11877 -24.92890 -23.96098 -23.87762 -22.81632 -22.18957 -20.37077 -19.94150 -19.53465 -18.26945 -16.94154 -16.65101 -16.47075 -16.27669 -15.92085 -15.35765 -14.79352 -14.68149 -14.45121 -14.29149 -13.85779 -13.78575 -13.67233 -13.21952 -12.89944 -12.67107 -12.41349 -12.05379 -12.05126 -11.91933 -11.80473 -11.46607 -11.05247 -10.81155 -10.76894 -10.69432 -10.66258 -10.39907 -10.32167 -10.00822 -9.72328 -9.67615 -9.63614 -9.47901 -8.60674 -8.48511 -7.71604 -6.79702 -5.59005 -3.01287 0.34405 0.79586 2.19978 2.26306 2.94705 3.43709 3.47920 3.51321 3.53975 3.71918 4.01264 4.21157 4.30576 4.35823 4.52197 4.56613 4.73241 5.06544 5.13492 5.21572 5.25197 5.38453 5.42623 5.50102 5.62358 5.65365 5.66455 5.74540 5.92964 6.01923 6.12386 6.23029 6.24045 6.36731 6.43085 6.47628 6.65605 6.73399 6.79190 6.83526 6.97236 7.22182 7.42838 7.60856 7.70177 7.92469 7.98336 8.41740 8.58445 9.27480 9.88415 10.53004 11.44542 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027568 B = 0.002457 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.416678 B =11393.162903 C =11857.838950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.085 4.085 3 C -0.129 4.129 4 C 0.052 3.948 5 N -0.369 5.369 6 C 0.142 3.858 7 N -0.417 5.417 8 C -0.057 4.057 9 C 0.604 3.396 10 O -0.549 6.549 11 N -0.699 5.699 12 C 0.137 3.863 13 H 0.092 0.908 14 C -0.153 4.153 15 C 0.154 3.846 16 N -0.595 5.595 17 C -0.217 4.217 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.921 5.921 21 Si 0.913 3.087 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.155 3.845 26 H 0.037 0.963 27 C -0.155 4.155 28 C 0.079 3.921 29 C -0.071 4.071 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.150 0.850 34 H 0.169 0.831 35 H 0.217 0.783 36 H 0.405 0.595 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.014 0.986 41 H 0.251 0.749 42 H 0.054 0.946 43 H 0.038 0.962 44 H 0.051 0.949 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 26.947 4.132 28.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.088 4.088 3 C -0.150 4.150 4 C -0.070 4.070 5 N -0.040 5.040 6 C -0.134 4.134 7 N -0.131 5.131 8 C -0.192 4.192 9 C 0.390 3.610 10 O -0.428 6.428 11 N -0.349 5.349 12 C 0.032 3.968 13 H 0.110 0.890 14 C -0.192 4.192 15 C 0.029 3.971 16 N -0.321 5.321 17 C -0.345 4.345 18 H 0.096 0.904 19 C -0.208 4.208 20 N -0.570 5.570 21 Si 0.744 3.256 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C 0.047 3.953 26 H 0.055 0.945 27 C -0.214 4.214 28 C -0.033 4.033 29 C -0.090 4.090 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.168 0.832 34 H 0.187 0.813 35 H 0.233 0.767 36 H 0.240 0.760 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.032 0.968 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -9.116 26.042 4.041 27.886 hybrid contribution 0.551 0.109 0.128 0.576 sum -8.565 26.151 4.169 27.832 Atomic orbital electron populations 1.20776 0.89677 1.03474 1.02916 1.19954 0.97247 0.92129 0.99494 1.20817 0.92315 0.99362 1.02505 1.21652 0.93054 0.88579 1.03674 1.43024 1.08599 1.06338 1.46039 1.25033 0.82396 0.94145 1.11858 1.70068 1.25753 1.04167 1.13104 1.20593 0.87454 0.93814 1.17299 1.16438 0.84998 0.83096 0.76490 1.90789 1.22250 1.77754 1.51977 1.45822 1.09137 1.06593 1.73310 1.22147 0.98923 0.77429 0.98289 0.89046 1.23398 1.00496 1.00304 0.95031 1.21935 0.88819 0.89061 0.97307 1.44507 1.27873 1.22699 1.36980 1.19079 1.01451 0.99409 1.14548 0.90411 1.24784 0.98700 0.98610 0.98663 1.69819 1.33873 1.29997 1.23305 0.86012 0.81005 0.81357 0.77206 1.20570 1.21843 1.21822 1.20988 0.93757 0.89727 0.90830 0.94496 1.22232 1.01936 0.99795 0.97452 1.19268 0.93229 0.85104 1.05712 1.20692 0.89735 1.00062 0.98535 0.90565 0.91125 0.90696 0.83212 0.81334 0.76661 0.75979 0.92009 0.91937 0.87438 0.96777 0.93820 0.92720 0.94305 0.92957 0.82245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.03 36.00 0.36 -0.26 16 2 C -0.08 -0.68 5.89 -104.50 -0.62 -1.30 16 3 C -0.13 -0.76 9.67 -39.91 -0.39 -1.15 16 4 C 0.05 0.33 10.95 -16.60 -0.18 0.14 16 5 N -0.37 -3.67 2.94 -62.19 -0.18 -3.86 16 6 C 0.14 1.42 12.73 -89.52 -1.14 0.28 16 7 N -0.42 -5.76 10.90 -10.53 -0.11 -5.87 16 8 C -0.06 -0.88 7.05 -82.57 -0.58 -1.47 16 9 C 0.60 10.75 7.77 -13.03 -0.10 10.65 16 10 O -0.55 -10.88 15.48 5.12 0.08 -10.80 16 11 N -0.70 -12.30 5.20 -53.45 -0.28 -12.58 16 12 C 0.14 2.71 2.75 -66.09 -0.18 2.53 16 13 H 0.09 1.89 7.40 -51.93 -0.38 1.51 16 14 C -0.15 -3.24 6.77 -24.58 -0.17 -3.41 16 15 C 0.15 3.89 5.88 -2.53 -0.01 3.88 16 16 N -0.60 -15.39 3.13 -162.56 -0.51 -15.90 16 17 C -0.22 -6.04 9.86 -15.06 -0.15 -6.19 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -27.23 10.09 55.49 0.56 -26.67 16 21 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.16 3.32 3.48 -66.95 -0.23 3.08 16 26 H 0.04 0.79 7.70 -51.93 -0.40 0.39 16 27 C -0.15 -3.04 9.14 37.16 0.34 -2.70 16 28 C 0.08 1.04 6.72 -83.99 -0.56 0.48 16 29 C -0.07 -0.81 9.38 -39.54 -0.37 -1.18 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 32 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 33 H 0.15 0.39 8.06 -52.48 -0.42 -0.03 16 34 H 0.17 0.37 8.06 -52.49 -0.42 -0.05 16 35 H 0.22 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.40 6.65 8.03 -40.82 -0.33 6.33 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.11 3.03 5.89 -51.93 -0.31 2.72 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.05 1.10 8.02 -51.93 -0.42 0.68 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.16 1.97 7.17 -52.49 -0.38 1.59 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -34.49 371.72 -10.35 -44.84 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -6.40 Total: 4.97 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -4.08 Total: 2.93 kcal Atomic # 7 Polarization: -64.36 SS G_CDS: -0.52 Total: -64.88 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.49 -10.35 -44.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088683045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.771 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds