Wall clock time and date at job start Tue Mar 31 2020 15:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 N 1.46503 * 109.47042 * 179.97438 * 3 2 1 5 5 C 1.36949 * 119.99981 * 269.99586 * 4 3 2 6 6 H 1.08000 * 119.99521 * 140.93279 * 5 4 3 7 7 C 1.38986 * 120.00151 * 320.93358 * 5 4 3 8 8 N 1.31400 * 119.99909 * 340.14924 * 7 5 4 9 9 Si 1.86800 * 119.99638 * 160.14835 * 7 5 4 10 10 H 1.48499 * 109.47296 * 90.00222 * 9 7 5 11 11 H 1.48501 * 109.46893 * 209.99881 * 9 7 5 12 12 H 1.48491 * 109.47505 * 330.00107 * 9 7 5 13 13 C 1.34783 * 119.99771 * 90.00057 * 4 3 2 14 14 O 1.21626 * 120.00001 * 354.71614 * 13 4 3 15 15 C 1.47417 * 119.99819 * 174.44096 * 13 4 3 16 16 N 1.34439 * 125.77505 * 355.08904 * 15 13 4 17 17 N 1.28751 * 109.58376 * 179.97438 * 16 15 13 18 18 N 1.40206 * 108.40540 * 0.02562 * 17 16 15 19 19 C 1.40223 * 126.61104 * 180.02562 * 18 17 16 20 20 C 1.38850 * 120.06496 * 220.67336 * 19 18 17 21 21 C 1.38103 * 119.93504 * 180.02562 * 20 19 18 22 22 C 1.38295 * 120.06530 * 359.97438 * 21 20 19 23 23 C 1.38261 * 120.12919 * 0.02562 * 22 21 20 24 24 C 1.50709 * 119.96417 * 180.02562 * 23 22 21 25 25 C 1.38135 * 120.07059 * 359.72736 * 23 22 21 26 26 C 1.35105 * 106.77852 * 359.73100 * 18 17 16 27 27 C 1.50705 * 126.60866 * 180.27559 * 26 18 17 28 28 H 1.08997 * 109.47619 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47151 * 300.00044 * 1 2 3 30 30 H 1.09001 * 109.47541 * 59.99961 * 1 2 3 31 31 H 1.08995 * 109.47048 * 239.99641 * 2 1 3 32 32 H 1.09002 * 109.46800 * 120.00092 * 2 1 3 33 33 H 1.08995 * 109.47350 * 59.99827 * 3 2 1 34 34 H 1.09002 * 109.47257 * 299.99812 * 3 2 1 35 35 H 0.97008 * 119.99597 * 185.05555 * 8 7 5 36 36 H 1.08007 * 120.03375 * 0.02562 * 20 19 18 37 37 H 1.08002 * 119.96925 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.93801 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.46785 * 89.99850 * 24 23 22 40 40 H 1.08997 * 109.46770 * 210.00246 * 24 23 22 41 41 H 1.09003 * 109.46943 * 329.99802 * 24 23 22 42 42 H 1.08000 * 120.04146 * 180.29549 * 25 23 22 43 43 H 1.08995 * 109.46739 * 266.43601 * 27 26 18 44 44 H 1.09001 * 109.47004 * 26.43950 * 27 26 18 45 45 H 1.08999 * 109.46570 * 146.44094 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.4426 1.1869 6 1 5.0881 0.8531 1.2919 7 6 3.7270 2.2014 2.2557 8 7 2.8964 3.1973 2.0437 9 14 4.2866 1.8054 3.9933 10 1 5.5194 2.5730 4.3035 11 1 3.2172 2.1770 4.9544 12 1 4.5679 0.3516 4.1036 13 6 4.1794 1.4422 -1.1664 14 8 3.5755 1.3450 -2.2177 15 6 5.6484 1.5658 -1.1688 16 7 6.4210 1.7774 -0.0892 17 7 7.6566 1.8325 -0.4469 18 7 7.7240 1.6501 -1.8354 19 6 8.8847 1.6404 -2.6222 20 6 8.8901 2.2660 -3.8618 21 6 10.0345 2.2543 -4.6347 22 6 11.1746 1.6208 -4.1749 23 6 11.1722 0.9970 -2.9410 24 6 12.4169 0.3082 -2.4434 25 6 10.0321 1.0097 -2.1612 26 6 6.4557 1.4790 -2.2683 27 6 6.0157 1.2412 -3.6900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 2.6312 3.7724 2.7786 36 1 8.0001 2.7613 -4.2212 37 1 10.0392 2.7404 -5.5991 38 1 12.0686 1.6132 -4.7808 39 1 13.0241 1.0171 -1.8805 40 1 12.1379 -0.5243 -1.7976 41 1 12.9889 -0.0664 -3.2923 42 1 10.0323 0.5264 -1.1954 43 1 5.7607 2.1932 -4.1554 44 1 6.8255 0.7697 -4.2469 45 1 5.1427 0.5886 -3.6957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056485591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:54 Heat of formation + Delta-G solvation = 90.527115 kcal Electronic energy + Delta-G solvation = -27869.958549 eV Core-core repulsion = 24082.916558 eV Total energy + Delta-G solvation = -3787.041992 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.80454 -39.51583 -38.24503 -35.14375 -34.73537 -32.79823 -32.57273 -31.97764 -31.20312 -29.61550 -27.53702 -27.18546 -25.76118 -24.56800 -23.78909 -22.46630 -21.78371 -20.70643 -19.93878 -19.18690 -17.88613 -16.83724 -16.34999 -16.04827 -15.36949 -15.03596 -14.62190 -14.40585 -14.28610 -14.05412 -13.81262 -13.61256 -13.46842 -13.41309 -12.97178 -12.78118 -12.70804 -12.56156 -12.31231 -12.19278 -11.71038 -11.62582 -11.48847 -11.32484 -11.23210 -11.18204 -10.89691 -10.77230 -10.55452 -10.25807 -10.20457 -9.95840 -9.67581 -9.06037 -9.04719 -8.76127 -8.57733 -8.31940 -7.38360 -6.28128 -3.90655 0.70743 1.05722 1.87927 2.43794 2.66608 3.25552 3.31226 3.35574 3.42077 4.19499 4.40641 4.46810 4.55897 4.67371 4.70641 4.84926 4.98138 5.04154 5.08657 5.14580 5.28129 5.34283 5.45485 5.52914 5.64712 5.72068 5.77261 5.82762 5.84441 5.88686 6.01874 6.07438 6.16120 6.22621 6.26990 6.32782 6.46390 6.53070 6.56832 6.69666 6.75866 6.85222 7.13728 7.14852 7.43279 7.67906 7.98620 8.53270 8.69481 9.18402 9.52738 9.94511 10.74814 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.003511 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.133076 B = 7974.141360 C = 9241.519763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.133 4.133 3 C 0.115 3.885 4 N -0.412 5.412 5 C -0.316 4.316 6 H 0.103 0.897 7 C 0.048 3.952 8 N -0.863 5.863 9 Si 0.915 3.085 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.533 3.467 14 O -0.605 6.605 15 C -0.048 4.048 16 N -0.153 5.153 17 N -0.094 5.094 18 N -0.334 5.334 19 C 0.153 3.847 20 C -0.126 4.126 21 C -0.098 4.098 22 C -0.121 4.121 23 C -0.071 4.071 24 C -0.114 4.114 25 C -0.105 4.105 26 C 0.093 3.907 27 C -0.083 4.083 28 H 0.045 0.955 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.106 0.894 34 H 0.055 0.945 35 H 0.269 0.731 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.128 0.872 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.529 -4.124 -10.937 17.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.126 5.126 5 C -0.445 4.445 6 H 0.121 0.879 7 C -0.158 4.158 8 N -0.500 5.500 9 Si 0.741 3.259 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.321 3.679 14 O -0.492 6.492 15 C -0.186 4.186 16 N -0.025 5.025 17 N -0.071 5.071 18 N -0.116 5.116 19 C 0.061 3.939 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.139 4.139 23 C -0.072 4.072 24 C -0.171 4.171 25 C -0.125 4.125 26 C -0.041 4.041 27 C -0.141 4.141 28 H 0.064 0.936 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.124 0.876 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.153 0.847 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 12.789 -3.815 -9.940 16.641 hybrid contribution -0.084 -0.021 0.207 0.224 sum 12.704 -3.837 -9.734 16.458 Atomic orbital electron populations 1.21656 0.96563 1.00438 1.01401 1.21816 0.94651 0.99235 1.01496 1.21503 0.80799 0.94854 1.03621 1.43371 1.04947 1.59881 1.04432 1.19702 1.10072 1.27596 0.87160 0.87918 1.25372 0.96103 0.93939 1.00340 1.69855 1.33328 1.13989 1.32878 0.86110 0.78363 0.79340 0.82051 1.20055 1.20953 1.19309 1.16975 0.83470 0.82923 0.84548 1.90588 1.68391 1.58658 1.31588 1.21475 0.96794 1.12664 0.87619 1.75161 0.96026 1.07209 1.24105 1.82147 1.14794 1.24158 0.85993 1.47578 1.04172 1.51067 1.08769 1.17496 0.85294 0.99954 0.91141 1.21164 1.00009 0.99840 0.93694 1.20989 0.92005 0.98956 0.99700 1.21137 0.98540 0.98394 0.95856 1.19805 0.95140 0.98041 0.94217 1.20812 0.94446 1.00174 1.01674 1.20945 0.91391 0.99405 1.00759 1.21886 0.83423 1.00142 0.98669 1.20590 1.02603 1.03952 0.86992 0.93637 0.92970 0.93138 0.92825 0.92164 0.87607 0.92610 0.92057 0.84866 0.84892 0.85413 0.90736 0.91201 0.91209 0.84735 0.89694 0.91617 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.91 37.16 0.37 -2.03 16 2 C -0.13 -2.75 6.26 -26.74 -0.17 -2.91 16 3 C 0.12 2.78 4.96 -4.04 -0.02 2.76 16 4 N -0.41 -10.78 2.51 -116.03 -0.29 -11.07 16 5 C -0.32 -8.48 7.68 -14.99 -0.12 -8.60 16 6 H 0.10 2.80 6.31 -52.49 -0.33 2.47 16 7 C 0.05 1.27 4.98 -17.46 -0.09 1.19 16 8 N -0.86 -23.48 11.47 55.50 0.64 -22.85 16 9 Si 0.91 20.77 29.60 -169.99 -5.03 15.74 16 10 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 13 C 0.53 13.65 7.61 -12.52 -0.10 13.56 16 14 O -0.61 -15.49 14.52 5.25 0.08 -15.42 16 15 C -0.05 -1.13 6.70 -83.55 -0.56 -1.69 16 16 N -0.15 -3.73 9.26 32.84 0.30 -3.42 16 17 N -0.09 -2.04 13.62 60.35 0.82 -1.22 16 18 N -0.33 -6.18 3.72 -6.69 -0.02 -6.21 16 19 C 0.15 2.24 6.17 -83.58 -0.52 1.72 16 20 C -0.13 -1.50 8.39 -39.40 -0.33 -1.83 16 21 C -0.10 -0.89 10.04 -39.61 -0.40 -1.29 16 22 C -0.12 -1.04 9.70 -39.55 -0.38 -1.42 16 23 C -0.07 -0.71 5.88 -104.65 -0.62 -1.32 16 24 C -0.11 -0.82 10.01 36.01 0.36 -0.46 16 25 C -0.10 -1.35 9.50 -39.41 -0.37 -1.72 16 26 C 0.09 1.80 6.84 -81.71 -0.56 1.24 16 27 C -0.08 -1.26 8.11 36.01 0.29 -0.97 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.11 2.70 5.57 -51.93 -0.29 2.41 16 34 H 0.06 1.37 7.50 -51.93 -0.39 0.98 16 35 H 0.27 6.92 8.32 -40.82 -0.34 6.58 16 36 H 0.13 1.50 6.89 -52.48 -0.36 1.14 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 41 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 42 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.08 1.19 8.05 -51.93 -0.42 0.77 16 44 H 0.07 0.81 7.04 -51.93 -0.37 0.44 16 45 H 0.11 1.81 6.77 -51.93 -0.35 1.45 16 LS Contribution 374.41 15.07 5.64 5.64 Total: -1.00 -31.60 374.41 -7.35 -38.95 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.29 Total: 3.63 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.20 Total: -3.78 kcal Atomic # 7 Polarization: -46.22 SS G_CDS: 1.45 Total: -44.77 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.08 Total: -15.42 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.60 -7.35 -38.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.478 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds