Wall clock time and date at job start Tue Mar 31 2020 15:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 N 1.46503 * 109.47042 * 179.97438 * 3 2 1 5 5 C 1.36949 * 119.99981 * 269.99586 * 4 3 2 6 6 H 1.08000 * 119.99521 * 140.93279 * 5 4 3 7 7 C 1.38986 * 120.00151 * 320.93358 * 5 4 3 8 8 N 1.31400 * 119.99909 * 340.14924 * 7 5 4 9 9 Si 1.86800 * 119.99638 * 160.14835 * 7 5 4 10 10 H 1.48499 * 109.47296 * 90.00222 * 9 7 5 11 11 H 1.48501 * 109.46893 * 209.99881 * 9 7 5 12 12 H 1.48491 * 109.47505 * 330.00107 * 9 7 5 13 13 C 1.34783 * 119.99771 * 90.00057 * 4 3 2 14 14 O 1.21626 * 120.00001 * 354.71614 * 13 4 3 15 15 C 1.47417 * 119.99819 * 174.44096 * 13 4 3 16 16 N 1.34439 * 125.77505 * 355.08904 * 15 13 4 17 17 N 1.28751 * 109.58376 * 179.97438 * 16 15 13 18 18 N 1.40206 * 108.40540 * 0.02562 * 17 16 15 19 19 C 1.40223 * 126.61104 * 180.02562 * 18 17 16 20 20 C 1.38850 * 120.06496 * 220.67336 * 19 18 17 21 21 C 1.38103 * 119.93504 * 180.02562 * 20 19 18 22 22 C 1.38295 * 120.06530 * 359.97438 * 21 20 19 23 23 C 1.38261 * 120.12919 * 0.02562 * 22 21 20 24 24 C 1.50709 * 119.96417 * 180.02562 * 23 22 21 25 25 C 1.38135 * 120.07059 * 359.72736 * 23 22 21 26 26 C 1.35105 * 106.77852 * 359.73100 * 18 17 16 27 27 C 1.50705 * 126.60866 * 180.27559 * 26 18 17 28 28 H 1.08997 * 109.47619 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47151 * 300.00044 * 1 2 3 30 30 H 1.09001 * 109.47541 * 59.99961 * 1 2 3 31 31 H 1.08995 * 109.47048 * 239.99641 * 2 1 3 32 32 H 1.09002 * 109.46800 * 120.00092 * 2 1 3 33 33 H 1.08995 * 109.47350 * 59.99827 * 3 2 1 34 34 H 1.09002 * 109.47257 * 299.99812 * 3 2 1 35 35 H 0.97008 * 119.99597 * 185.05555 * 8 7 5 36 36 H 1.08007 * 120.03375 * 0.02562 * 20 19 18 37 37 H 1.08002 * 119.96925 * 179.97438 * 21 20 19 38 38 H 1.07999 * 119.93801 * 180.02562 * 22 21 20 39 39 H 1.08998 * 109.46785 * 89.99850 * 24 23 22 40 40 H 1.08997 * 109.46770 * 210.00246 * 24 23 22 41 41 H 1.09003 * 109.46943 * 329.99802 * 24 23 22 42 42 H 1.08000 * 120.04146 * 180.29549 * 25 23 22 43 43 H 1.08995 * 109.46739 * 266.43601 * 27 26 18 44 44 H 1.09001 * 109.47004 * 26.43950 * 27 26 18 45 45 H 1.08999 * 109.46570 * 146.44094 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.4426 1.1869 6 1 5.0881 0.8531 1.2919 7 6 3.7270 2.2014 2.2557 8 7 2.8964 3.1973 2.0437 9 14 4.2866 1.8054 3.9933 10 1 5.5194 2.5730 4.3035 11 1 3.2172 2.1770 4.9544 12 1 4.5679 0.3516 4.1036 13 6 4.1794 1.4422 -1.1664 14 8 3.5755 1.3450 -2.2177 15 6 5.6484 1.5658 -1.1688 16 7 6.4210 1.7774 -0.0892 17 7 7.6566 1.8325 -0.4469 18 7 7.7240 1.6501 -1.8354 19 6 8.8847 1.6404 -2.6222 20 6 8.8901 2.2660 -3.8618 21 6 10.0345 2.2543 -4.6347 22 6 11.1746 1.6208 -4.1749 23 6 11.1722 0.9970 -2.9410 24 6 12.4169 0.3082 -2.4434 25 6 10.0321 1.0097 -2.1612 26 6 6.4557 1.4790 -2.2683 27 6 6.0157 1.2412 -3.6900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 2.6312 3.7724 2.7786 36 1 8.0001 2.7613 -4.2212 37 1 10.0392 2.7404 -5.5991 38 1 12.0686 1.6132 -4.7808 39 1 13.0241 1.0171 -1.8805 40 1 12.1379 -0.5243 -1.7976 41 1 12.9889 -0.0664 -3.2923 42 1 10.0323 0.5264 -1.1954 43 1 5.7607 2.1932 -4.1554 44 1 6.8255 0.7697 -4.2469 45 1 5.1427 0.5886 -3.6957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056485591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:53 Heat of formation + Delta-G solvation = 72.942794 kcal Electronic energy + Delta-G solvation = -27870.721063 eV Core-core repulsion = 24082.916558 eV Total energy + Delta-G solvation = -3787.804505 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.36165 -40.56087 -40.05859 -37.06125 -36.02657 -34.52459 -33.47685 -33.38842 -33.09976 -30.81037 -28.99414 -27.93831 -27.55294 -26.45505 -25.00949 -23.92719 -22.87134 -22.30827 -21.24947 -21.05443 -19.53581 -18.30805 -17.47311 -17.34991 -17.05237 -16.57591 -16.33602 -16.03014 -15.48496 -15.38390 -15.31018 -14.91869 -14.79442 -14.68257 -14.31322 -14.03492 -13.94527 -13.88484 -13.40250 -13.23493 -13.20263 -13.08746 -12.93571 -12.91093 -12.61376 -12.51896 -12.45746 -12.25492 -12.16145 -12.01726 -11.70955 -11.55069 -11.48374 -11.00955 -10.53905 -10.18053 -9.90074 -9.58498 -9.37362 -8.28587 -5.97280 -0.41207 0.23286 0.56861 0.86816 1.08511 1.42976 1.44219 1.55094 2.31212 2.48493 2.55450 2.86060 3.08274 3.36577 3.58718 3.73892 3.79937 3.99005 4.03097 4.08538 4.21748 4.24706 4.29229 4.35316 4.49347 4.56122 4.58034 4.70155 4.72718 4.78839 4.82981 4.85272 4.88738 4.99246 5.09378 5.12116 5.22756 5.25301 5.28728 5.31733 5.39894 5.47394 5.54444 5.64185 5.65498 5.96690 6.02185 6.49900 6.99466 7.18637 7.54850 7.95008 8.74971 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015338 B = 0.003511 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1825.133076 B = 7974.141360 C = 9241.519763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.123 4.123 3 C 0.117 3.883 4 N -0.429 5.429 5 C -0.325 4.325 6 H 0.092 0.908 7 C 0.011 3.989 8 N -0.893 5.893 9 Si 0.974 3.026 10 H -0.279 1.279 11 H -0.272 1.272 12 H -0.264 1.264 13 C 0.526 3.474 14 O -0.614 6.614 15 C -0.093 4.093 16 N -0.190 5.190 17 N -0.114 5.114 18 N -0.315 5.315 19 C 0.104 3.896 20 C -0.129 4.129 21 C -0.088 4.088 22 C -0.104 4.104 23 C -0.071 4.071 24 C -0.114 4.114 25 C -0.120 4.120 26 C 0.111 3.889 27 C -0.076 4.076 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.043 0.957 35 H 0.272 0.728 36 H 0.138 0.862 37 H 0.171 0.829 38 H 0.168 0.832 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.866 -4.606 -13.286 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C -0.006 4.006 4 N -0.144 5.144 5 C -0.454 4.454 6 H 0.109 0.891 7 C -0.192 4.192 8 N -0.531 5.531 9 Si 0.798 3.202 10 H -0.205 1.205 11 H -0.197 1.197 12 H -0.188 1.188 13 C 0.315 3.685 14 O -0.502 6.502 15 C -0.232 4.232 16 N -0.061 5.061 17 N -0.091 5.091 18 N -0.096 5.096 19 C 0.014 3.986 20 C -0.150 4.150 21 C -0.106 4.106 22 C -0.122 4.122 23 C -0.072 4.072 24 C -0.171 4.171 25 C -0.140 4.140 26 C -0.026 4.026 27 C -0.135 4.135 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.189 0.811 38 H 0.185 0.815 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.135 0.865 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.159 -4.304 -12.291 19.985 hybrid contribution -0.548 0.143 0.684 0.888 sum 14.612 -4.161 -11.607 19.119 Atomic orbital electron populations 1.21603 0.93329 1.02401 1.01875 1.21710 0.97392 0.96502 1.00599 1.21496 0.80165 0.96837 1.02060 1.43596 1.05694 1.60531 1.04564 1.19696 1.10110 1.27836 0.87773 0.89069 1.26069 0.96224 0.93538 1.03394 1.69942 1.34464 1.14792 1.33881 0.85229 0.77866 0.79159 0.77965 1.20545 1.19674 1.18780 1.17331 0.84607 0.82208 0.84375 1.90541 1.69057 1.59010 1.31631 1.21448 0.96347 1.16127 0.89237 1.75086 0.96938 1.08668 1.25438 1.81988 1.13781 1.25143 0.88238 1.47720 1.05219 1.48722 1.07911 1.17995 0.84551 1.03623 0.92416 1.21359 1.01528 0.99460 0.92629 1.21445 0.90722 0.97931 1.00494 1.21658 0.99681 0.95790 0.95036 1.20153 0.94807 0.97792 0.94445 1.20890 0.93464 1.00019 1.02713 1.21004 0.92206 1.00024 1.00813 1.22379 0.83249 0.97518 0.99405 1.20709 1.03145 1.04829 0.84777 0.90892 0.92653 0.92521 0.93699 0.92938 0.89133 0.93893 0.91823 0.84429 0.81140 0.81452 0.89962 0.91696 0.88663 0.86461 0.87903 0.88052 0.88897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.41 9.91 71.98 0.71 -3.69 16 2 C -0.12 -5.20 6.26 30.59 0.19 -5.01 16 3 C 0.12 5.90 4.96 86.38 0.43 6.33 16 4 N -0.43 -23.59 2.51 -639.26 -1.60 -25.19 16 5 C -0.33 -18.30 7.68 84.07 0.65 -17.66 16 6 H 0.09 5.28 6.31 -2.91 -0.02 5.26 16 7 C 0.01 0.58 4.98 84.94 0.42 1.00 16 8 N -0.89 -50.25 11.47 21.67 0.25 -50.00 16 9 Si 0.97 43.83 29.60 68.60 2.03 45.86 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 13 C 0.53 28.28 7.61 86.66 0.66 28.94 16 14 O -0.61 -32.60 14.52 -4.11 -0.06 -32.66 16 15 C -0.09 -4.59 6.70 40.80 0.27 -4.32 16 16 N -0.19 -9.81 9.26 -50.00 -0.46 -10.27 16 17 N -0.11 -5.22 13.62 37.02 0.50 -4.72 16 18 N -0.32 -11.90 3.72 -175.09 -0.65 -12.55 16 19 C 0.10 2.97 6.17 38.08 0.23 3.21 16 20 C -0.13 -2.73 8.39 22.38 0.19 -2.54 16 21 C -0.09 -1.18 10.04 22.25 0.22 -0.96 16 22 C -0.10 -1.27 9.70 22.29 0.22 -1.05 16 23 C -0.07 -1.21 5.88 -19.88 -0.12 -1.32 16 24 C -0.11 -1.29 10.01 71.24 0.71 -0.58 16 25 C -0.12 -3.03 9.50 22.38 0.21 -2.82 16 26 C 0.11 4.39 6.84 41.69 0.29 4.68 16 27 C -0.08 -2.26 8.11 71.24 0.58 -1.68 16 28 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.09 4.82 5.57 -2.39 -0.01 4.81 16 34 H 0.04 2.20 7.50 -2.39 -0.02 2.18 16 35 H 0.27 14.37 8.32 -92.70 -0.77 13.60 16 36 H 0.14 2.74 6.89 -2.91 -0.02 2.72 16 37 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.17 0.82 8.06 -2.91 -0.02 0.80 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 0.81 8.09 -2.39 -0.02 0.79 16 41 H 0.09 0.62 8.09 -2.39 -0.02 0.60 16 42 H 0.12 3.26 8.06 -2.91 -0.02 3.23 16 43 H 0.10 2.72 8.05 -2.39 -0.02 2.70 16 44 H 0.10 2.26 7.04 -2.39 -0.02 2.24 16 45 H 0.09 3.10 6.77 -2.39 -0.02 3.09 16 Total: -1.00 -74.06 374.41 6.88 -67.18 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 1.00 Total: 19.83 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.87 Total: 2.52 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -1.96 Total: -102.73 kcal Atomic # 8 Polarization: -32.60 SS G_CDS: -0.06 Total: -32.66 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -74.06 6.88 -67.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056485591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.123 kcal (2) G-P(sol) polarization free energy of solvation -74.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds