Wall clock time and date at job start Tue Mar 31 2020 15:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47106 * 2 1 4 4 H 1.09001 * 109.47193 * 304.99798 * 3 2 1 5 5 C 1.50701 * 109.47068 * 185.00404 * 3 2 1 6 6 H 1.08003 * 119.99407 * 240.00426 * 5 3 2 7 7 C 1.37878 * 120.00191 * 59.99563 * 5 3 2 8 8 N 1.31505 * 119.99943 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99704 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47330 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46982 * 120.00579 * 9 7 5 12 12 H 1.48497 * 109.47133 * 239.99999 * 9 7 5 13 13 N 1.46494 * 109.46875 * 65.00203 * 3 2 1 14 14 C 1.34781 * 119.99838 * 274.99744 * 13 3 2 15 15 O 1.21590 * 120.00162 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99738 * 180.02562 * 14 13 3 17 17 C 1.40124 * 119.99790 * 179.97438 * 16 14 13 18 18 N 1.31230 * 125.89673 * 0.29391 * 17 16 14 19 19 N 1.40085 * 108.21399 * 180.12709 * 18 17 16 20 20 C 1.40111 * 126.03942 * 179.87757 * 19 18 17 21 21 C 1.38868 * 120.06630 * 359.69305 * 20 19 18 22 22 C 1.38115 * 119.92822 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.06989 * 0.02562 * 22 21 20 24 24 C 1.38283 * 120.14224 * 359.97438 * 23 22 21 25 25 C 1.38118 * 120.06567 * 0.02562 * 24 23 22 26 26 C 1.35788 * 107.92550 * 359.61694 * 19 18 17 27 27 C 1.35244 * 107.73919 * 0.22752 * 26 19 18 28 28 C 1.50697 * 126.04522 * 179.97438 * 27 26 19 29 29 H 1.08993 * 109.47302 * 299.99841 * 1 2 3 30 30 H 1.09004 * 109.47045 * 59.99896 * 1 2 3 31 31 H 1.09005 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46839 * 240.00373 * 2 1 3 33 33 H 1.08996 * 109.47621 * 120.00238 * 2 1 3 34 34 H 0.97003 * 120.00189 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99870 * 94.99988 * 13 3 2 36 36 H 0.97002 * 119.99964 * 0.02562 * 16 14 13 37 37 H 1.07998 * 120.03346 * 0.24955 * 21 20 19 38 38 H 1.08000 * 119.96136 * 179.97438 * 22 21 20 39 39 H 1.08008 * 119.93168 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.97209 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.03483 * 179.97438 * 25 24 23 42 42 H 1.07998 * 126.13488 * 180.24393 * 26 19 18 43 43 H 1.08999 * 109.47596 * 90.01693 * 28 27 26 44 44 H 1.09000 * 109.47103 * 210.02441 * 28 27 26 45 45 H 1.09008 * 109.47030 * 330.01667 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5463 -0.1944 11 1 6.4971 -0.5174 -1.4631 12 1 6.3989 1.6167 -2.6103 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6643 1.3669 15 8 -0.3413 2.6326 0.4317 16 7 0.0788 3.2673 2.5185 17 6 -1.1866 3.8572 2.6380 18 7 -2.1132 3.8856 1.7091 19 7 -3.2246 4.5682 2.2200 20 6 -4.4241 4.8162 1.5396 21 6 -4.5866 4.3753 0.2329 22 6 -5.7704 4.6208 -0.4349 23 6 -6.7928 5.3053 0.1961 24 6 -6.6340 5.7456 1.4973 25 6 -5.4526 5.5032 2.1705 26 6 -2.9364 4.9422 3.4932 27 6 -1.6844 4.5151 3.7747 28 6 -0.9527 4.7109 5.0775 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8292 -0.0604 -2.9503 35 1 2.2720 2.1230 1.9978 36 1 0.6986 3.2935 3.2642 37 1 -3.7899 3.8372 -0.2591 38 1 -5.8973 4.2785 -1.4514 39 1 -7.7174 5.4964 -0.3284 40 1 -7.4345 6.2796 1.9876 41 1 -5.3290 5.8477 3.1866 42 1 -3.5898 5.4834 4.1614 43 1 -1.1573 3.8694 5.7393 44 1 0.1188 4.7711 4.8868 45 1 -1.2902 5.6342 5.5486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157402113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:51 Heat of formation + Delta-G solvation = 83.471909 kcal Electronic energy + Delta-G solvation = -27372.834692 eV Core-core repulsion = 23585.486763 eV Total energy + Delta-G solvation = -3787.347928 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.58892 -39.53214 -38.86427 -35.60221 -34.45960 -32.99445 -32.30796 -31.76331 -31.08307 -30.68364 -28.85111 -26.90718 -26.50202 -23.66739 -22.89980 -22.74869 -21.54047 -20.37347 -19.72650 -19.37728 -18.19171 -17.86514 -16.68459 -16.08404 -15.89263 -15.61778 -15.05018 -14.81706 -14.63912 -14.47136 -14.05142 -13.79440 -13.53905 -13.39759 -13.25082 -13.09176 -12.66624 -12.62524 -12.24674 -12.13946 -11.77442 -11.56873 -11.30831 -11.23392 -10.97120 -10.93088 -10.76239 -10.40990 -10.26605 -10.14322 -9.58787 -9.28891 -9.26981 -9.19172 -9.00010 -8.70225 -8.48495 -7.86036 -7.59858 -6.10730 -4.19822 0.76467 1.16303 2.16505 2.22991 2.74277 3.21644 3.24830 3.33063 3.35931 3.65748 4.07340 4.31770 4.36213 4.58117 4.71362 4.78493 4.93446 5.08761 5.13461 5.18946 5.21353 5.30129 5.41504 5.52840 5.56434 5.67081 5.84668 5.95296 6.09199 6.18255 6.23267 6.35832 6.45684 6.53761 6.61460 6.71384 6.87870 7.04106 7.14760 7.22880 7.32791 7.42897 7.50150 7.65952 7.74524 7.92395 8.10162 8.21578 8.76712 8.89194 9.31514 9.49339 10.94732 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.002787 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.701499 B =10045.265735 C =11167.544581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.050 0.950 5 C -0.533 4.533 6 H 0.062 0.938 7 C 0.066 3.934 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.719 5.719 14 C 0.685 3.315 15 O -0.546 6.546 16 N -0.657 5.657 17 C 0.336 3.664 18 N -0.260 5.260 19 N -0.332 5.332 20 C 0.176 3.824 21 C -0.119 4.119 22 C -0.094 4.094 23 C -0.139 4.139 24 C -0.095 4.095 25 C -0.150 4.150 26 C 0.061 3.939 27 C -0.245 4.245 28 C -0.071 4.071 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.020 0.980 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.385 0.615 36 H 0.410 0.590 37 H 0.144 0.856 38 H 0.131 0.869 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.176 0.824 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.068 10.318 13.355 23.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.371 5.371 14 C 0.385 3.615 15 O -0.419 6.419 16 N -0.311 5.311 17 C 0.075 3.925 18 N -0.086 5.086 19 N -0.108 5.108 20 C 0.083 3.917 21 C -0.139 4.139 22 C -0.112 4.112 23 C -0.158 4.158 24 C -0.114 4.114 25 C -0.171 4.171 26 C -0.080 4.080 27 C -0.257 4.257 28 C -0.129 4.129 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.246 0.754 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.193 0.807 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.001 9.785 11.006 22.493 hybrid contribution 1.849 0.182 1.463 2.365 sum -15.152 9.967 12.469 22.009 Atomic orbital electron populations 1.21809 0.98219 0.97834 1.01367 1.21956 0.92701 0.99855 1.02171 1.18720 0.93977 0.88856 0.79872 0.93235 1.21257 0.90639 1.38926 1.06295 0.92028 1.24878 0.98586 0.94850 0.95388 1.69907 1.35008 1.37640 1.09305 0.86396 0.84872 0.77735 0.78093 1.19774 1.20897 1.20910 1.45782 1.13055 1.58943 1.19336 1.16182 0.83939 0.79222 0.82188 1.90997 1.51259 1.62561 1.37044 1.42351 1.12903 1.58692 1.17151 1.18991 0.86925 0.94680 0.91892 1.78311 0.93121 1.18727 1.18447 1.45761 1.11528 1.43587 1.09924 1.17529 0.83047 0.98633 0.92470 1.21105 0.99158 1.00798 0.92836 1.21110 0.92460 0.97550 1.00105 1.21184 0.99421 0.99842 0.95317 1.20897 0.96427 0.99354 0.94739 1.20746 0.93261 1.02387 1.00738 1.22303 0.96777 1.01527 0.87401 1.19817 0.96311 1.11566 0.98052 1.20046 0.99095 1.01699 0.92104 0.94290 0.93143 0.96077 0.88294 0.95104 0.92612 0.78313 0.75383 0.83857 0.85152 0.85705 0.85327 0.85488 0.80689 0.91777 0.91875 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.51 37.16 0.32 -2.85 16 2 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 3 C 0.29 7.29 2.24 -69.08 -0.15 7.14 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.53 -14.03 8.73 -34.44 -0.30 -14.33 16 6 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.79 11.29 55.43 0.63 -24.17 16 9 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 13 N -0.72 -15.03 5.03 -59.81 -0.30 -15.33 16 14 C 0.69 14.37 7.10 -86.91 -0.62 13.75 16 15 O -0.55 -13.63 12.19 5.29 0.06 -13.57 16 16 N -0.66 -10.78 5.45 -15.50 -0.08 -10.86 16 17 C 0.34 5.65 7.77 -154.39 -1.20 4.45 16 18 N -0.26 -4.96 10.08 31.44 0.32 -4.64 16 19 N -0.33 -5.03 3.81 -10.59 -0.04 -5.08 16 20 C 0.18 2.38 6.69 -83.61 -0.56 1.82 16 21 C -0.12 -1.66 9.66 -39.39 -0.38 -2.04 16 22 C -0.09 -1.01 10.04 -39.61 -0.40 -1.41 16 23 C -0.14 -1.23 10.04 -39.55 -0.40 -1.63 16 24 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 25 C -0.15 -1.49 9.46 -39.40 -0.37 -1.86 16 26 C 0.06 0.73 10.72 -16.87 -0.18 0.55 16 27 C -0.24 -3.09 6.12 -104.85 -0.64 -3.73 16 28 C -0.07 -0.61 10.21 36.00 0.37 -0.24 16 29 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 30 H 0.05 1.26 7.84 -51.93 -0.41 0.86 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.10 2.70 5.95 -51.93 -0.31 2.39 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 35 H 0.38 6.81 8.55 -40.82 -0.35 6.46 16 36 H 0.41 5.02 8.22 -40.82 -0.34 4.69 16 37 H 0.14 2.37 7.70 -52.49 -0.40 1.96 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 41 H 0.13 0.93 6.74 -52.48 -0.35 0.57 16 42 H 0.18 1.29 7.05 -52.49 -0.37 0.92 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.50 7.69 -51.93 -0.40 0.10 16 45 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -34.12 372.54 -10.10 -44.21 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.12 Total: 11.41 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -5.16 Total: -3.20 kcal Atomic # 7 Polarization: -60.59 SS G_CDS: 0.52 Total: -60.08 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.06 Total: -13.57 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.12 -10.10 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157402113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.687 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds