Wall clock time and date at job start Tue Mar 31 2020 15:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47106 * 2 1 4 4 H 1.09001 * 109.47193 * 304.99798 * 3 2 1 5 5 C 1.50701 * 109.47068 * 185.00404 * 3 2 1 6 6 H 1.08003 * 119.99407 * 240.00426 * 5 3 2 7 7 C 1.37878 * 120.00191 * 59.99563 * 5 3 2 8 8 N 1.31505 * 119.99943 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99704 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47330 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46982 * 120.00579 * 9 7 5 12 12 H 1.48497 * 109.47133 * 239.99999 * 9 7 5 13 13 N 1.46494 * 109.46875 * 65.00203 * 3 2 1 14 14 C 1.34781 * 119.99838 * 274.99744 * 13 3 2 15 15 O 1.21590 * 120.00162 * 359.97438 * 14 13 3 16 16 N 1.34778 * 119.99738 * 180.02562 * 14 13 3 17 17 C 1.40124 * 119.99790 * 179.97438 * 16 14 13 18 18 N 1.31230 * 125.89673 * 0.29391 * 17 16 14 19 19 N 1.40085 * 108.21399 * 180.12709 * 18 17 16 20 20 C 1.40111 * 126.03942 * 179.87757 * 19 18 17 21 21 C 1.38868 * 120.06630 * 359.69305 * 20 19 18 22 22 C 1.38115 * 119.92822 * 179.97438 * 21 20 19 23 23 C 1.38273 * 120.06989 * 0.02562 * 22 21 20 24 24 C 1.38283 * 120.14224 * 359.97438 * 23 22 21 25 25 C 1.38118 * 120.06567 * 0.02562 * 24 23 22 26 26 C 1.35788 * 107.92550 * 359.61694 * 19 18 17 27 27 C 1.35244 * 107.73919 * 0.22752 * 26 19 18 28 28 C 1.50697 * 126.04522 * 179.97438 * 27 26 19 29 29 H 1.08993 * 109.47302 * 299.99841 * 1 2 3 30 30 H 1.09004 * 109.47045 * 59.99896 * 1 2 3 31 31 H 1.09005 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46839 * 240.00373 * 2 1 3 33 33 H 1.08996 * 109.47621 * 120.00238 * 2 1 3 34 34 H 0.97003 * 120.00189 * 179.97438 * 8 7 5 35 35 H 0.97002 * 119.99870 * 94.99988 * 13 3 2 36 36 H 0.97002 * 119.99964 * 0.02562 * 16 14 13 37 37 H 1.07998 * 120.03346 * 0.24955 * 21 20 19 38 38 H 1.08000 * 119.96136 * 179.97438 * 22 21 20 39 39 H 1.08008 * 119.93168 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.97209 * 180.02562 * 24 23 22 41 41 H 1.08004 * 120.03483 * 179.97438 * 25 24 23 42 42 H 1.07998 * 126.13488 * 180.24393 * 26 19 18 43 43 H 1.08999 * 109.47596 * 90.01693 * 28 27 26 44 44 H 1.09000 * 109.47103 * 210.02441 * 28 27 26 45 45 H 1.09008 * 109.47030 * 330.01667 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2281 8 7 3.4062 0.3374 -2.1733 9 14 6.0049 0.8813 -1.3819 10 1 6.5987 1.5463 -0.1944 11 1 6.4971 -0.5174 -1.4631 12 1 6.3989 1.6167 -2.6103 13 7 1.6525 2.0974 1.2518 14 6 0.4351 2.6643 1.3669 15 8 -0.3413 2.6326 0.4317 16 7 0.0788 3.2673 2.5185 17 6 -1.1866 3.8572 2.6380 18 7 -2.1132 3.8856 1.7091 19 7 -3.2246 4.5682 2.2200 20 6 -4.4241 4.8162 1.5396 21 6 -4.5866 4.3753 0.2329 22 6 -5.7704 4.6208 -0.4349 23 6 -6.7928 5.3053 0.1961 24 6 -6.6340 5.7456 1.4973 25 6 -5.4526 5.5032 2.1705 26 6 -2.9364 4.9422 3.4932 27 6 -1.6844 4.5151 3.7747 28 6 -0.9527 4.7109 5.0775 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.8292 -0.0604 -2.9503 35 1 2.2720 2.1230 1.9978 36 1 0.6986 3.2935 3.2642 37 1 -3.7899 3.8372 -0.2591 38 1 -5.8973 4.2785 -1.4514 39 1 -7.7174 5.4964 -0.3284 40 1 -7.4345 6.2796 1.9876 41 1 -5.3290 5.8477 3.1866 42 1 -3.5898 5.4834 4.1614 43 1 -1.1573 3.8694 5.7393 44 1 0.1188 4.7711 4.8868 45 1 -1.2902 5.6342 5.5486 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157402113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:50 Heat of formation + Delta-G solvation = 61.776483 kcal Electronic energy + Delta-G solvation = -27373.775476 eV Core-core repulsion = 23585.486763 eV Total energy + Delta-G solvation = -3788.288713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67380 -41.03612 -39.85865 -37.32194 -35.97494 -34.44564 -33.91732 -32.88099 -32.43678 -31.89422 -29.93670 -28.83795 -27.33312 -25.33425 -24.30701 -23.73266 -22.74693 -21.77668 -21.14362 -21.00218 -19.56297 -19.02661 -18.10083 -17.63643 -17.04881 -16.92372 -16.73432 -16.17158 -15.89253 -15.63053 -15.30509 -15.16847 -14.60095 -14.58061 -14.36316 -14.23851 -13.98965 -13.96125 -13.59295 -13.33044 -13.20799 -12.91075 -12.81588 -12.72206 -12.52927 -12.25497 -12.18563 -12.10983 -12.06380 -11.62879 -11.54643 -11.06423 -10.95102 -10.55375 -10.30278 -10.00827 -9.91009 -9.61078 -8.68777 -8.16376 -6.33780 -0.11416 0.34902 1.12780 1.22613 1.44620 1.45521 1.55724 1.57692 1.93054 2.41512 2.48147 2.82765 3.13257 3.31643 3.51412 3.83765 3.94989 4.08410 4.21711 4.35237 4.43391 4.45515 4.48063 4.52606 4.52907 4.66058 4.73191 4.87631 4.99068 5.02204 5.04764 5.17462 5.19319 5.27866 5.35627 5.40993 5.42421 5.50243 5.53325 5.60336 5.69179 5.76384 5.84728 5.88334 6.09790 6.15491 6.30189 6.71321 6.75704 7.28218 7.35254 7.72549 8.89709 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016917 B = 0.002787 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.701499 B =10045.265735 C =11167.544581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.119 4.119 3 C 0.298 3.702 4 H -0.006 1.006 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.974 3.026 10 H -0.259 1.259 11 H -0.278 1.278 12 H -0.286 1.286 13 N -0.712 5.712 14 C 0.685 3.315 15 O -0.592 6.592 16 N -0.640 5.640 17 C 0.306 3.694 18 N -0.328 5.328 19 N -0.338 5.338 20 C 0.142 3.858 21 C -0.156 4.156 22 C -0.103 4.103 23 C -0.131 4.131 24 C -0.085 4.085 25 C -0.141 4.141 26 C 0.070 3.930 27 C -0.245 4.245 28 C -0.068 4.068 29 H 0.036 0.964 30 H 0.020 0.980 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.403 0.597 36 H 0.430 0.570 37 H 0.096 0.904 38 H 0.138 0.862 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.161 0.839 42 H 0.228 0.772 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.313 12.190 16.867 27.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.158 4.158 3 C 0.194 3.806 4 H 0.012 0.988 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.798 3.202 10 H -0.182 1.182 11 H -0.204 1.204 12 H -0.212 1.212 13 N -0.366 5.366 14 C 0.384 3.616 15 O -0.468 6.468 16 N -0.295 5.295 17 C 0.047 3.953 18 N -0.155 5.155 19 N -0.115 5.115 20 C 0.050 3.950 21 C -0.176 4.176 22 C -0.121 4.121 23 C -0.149 4.149 24 C -0.103 4.103 25 C -0.161 4.161 26 C -0.071 4.071 27 C -0.258 4.258 28 C -0.126 4.126 29 H 0.055 0.945 30 H 0.040 0.960 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.238 0.762 36 H 0.270 0.730 37 H 0.114 0.886 38 H 0.156 0.844 39 H 0.176 0.824 40 H 0.190 0.810 41 H 0.179 0.821 42 H 0.244 0.756 43 H 0.094 0.906 44 H 0.085 0.915 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.240 11.683 14.600 26.122 hybrid contribution 2.023 -0.313 0.343 2.075 sum -16.217 11.370 14.943 24.811 Atomic orbital electron populations 1.21613 0.97444 0.98657 0.99806 1.21796 0.93200 0.99349 1.01439 1.18269 0.93647 0.88668 0.79972 0.98785 1.21582 0.91023 1.38892 1.06824 0.90704 1.25800 1.03492 0.94357 0.94956 1.70067 1.37092 1.38405 1.09883 0.85274 0.78853 0.77839 0.78207 1.18237 1.20375 1.21188 1.45371 1.13672 1.58941 1.18638 1.16288 0.83306 0.79098 0.82873 1.90980 1.52508 1.64095 1.39190 1.41907 1.13636 1.57780 1.16178 1.19426 0.86545 0.95811 0.93497 1.78166 0.95216 1.20899 1.21227 1.45881 1.11089 1.43376 1.11138 1.17970 0.83776 1.00601 0.92650 1.20959 0.99546 1.02882 0.94228 1.21286 0.92091 0.98110 1.00650 1.21608 0.99540 0.97929 0.95811 1.21454 0.96649 0.97947 0.94291 1.21162 0.92256 1.00638 1.02060 1.23167 0.97102 1.00413 0.86398 1.20276 0.96678 1.10561 0.98275 1.20164 0.98875 1.03474 0.90071 0.94518 0.96044 0.93819 0.90798 0.93743 0.92595 0.76186 0.72994 0.88599 0.84403 0.82382 0.81035 0.82116 0.75614 0.90624 0.91528 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.51 71.98 0.61 -5.21 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.30 15.87 2.24 44.25 0.10 15.96 16 4 H -0.01 -0.37 7.58 -2.39 -0.02 -0.39 16 5 C -0.54 -29.21 8.73 25.60 0.22 -28.98 16 6 H 0.07 3.72 7.74 -2.91 -0.02 3.70 16 7 C 0.01 0.76 5.29 84.66 0.45 1.21 16 8 N -0.92 -53.46 11.29 21.45 0.24 -53.22 16 9 Si 0.97 42.52 29.54 68.60 2.03 44.55 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 11 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 12 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.71 -30.84 5.03 -461.41 -2.32 -33.16 16 14 C 0.68 30.30 7.10 179.05 1.27 31.57 16 15 O -0.59 -32.08 12.19 -4.00 -0.05 -32.12 16 16 N -0.64 -21.60 5.45 -321.23 -1.75 -23.35 16 17 C 0.31 10.62 7.77 133.35 1.04 11.66 16 18 N -0.33 -13.42 10.08 -54.43 -0.55 -13.96 16 19 N -0.34 -10.46 3.81 -187.43 -0.71 -11.18 16 20 C 0.14 3.91 6.69 38.12 0.25 4.16 16 21 C -0.16 -4.80 9.66 22.39 0.22 -4.58 16 22 C -0.10 -2.30 10.04 22.25 0.22 -2.07 16 23 C -0.13 -1.97 10.04 22.29 0.22 -1.75 16 24 C -0.09 -1.08 10.04 22.25 0.22 -0.86 16 25 C -0.14 -2.37 9.46 22.39 0.21 -2.16 16 26 C 0.07 1.51 10.72 83.39 0.89 2.41 16 27 C -0.25 -5.84 6.12 -20.02 -0.12 -5.96 16 28 C -0.07 -0.94 10.21 71.23 0.73 -0.21 16 29 H 0.04 1.80 5.64 -2.39 -0.01 1.79 16 30 H 0.02 1.13 7.84 -2.38 -0.02 1.11 16 31 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.07 4.22 5.95 -2.39 -0.01 4.20 16 33 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.26 14.60 8.31 -92.71 -0.77 13.82 16 35 H 0.40 14.27 8.55 -92.71 -0.79 13.48 16 36 H 0.43 10.39 8.22 -92.71 -0.76 9.63 16 37 H 0.10 3.77 7.70 -2.91 -0.02 3.75 16 38 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 41 H 0.16 1.52 6.74 -2.91 -0.02 1.50 16 42 H 0.23 2.21 7.05 -2.91 -0.02 2.18 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 0.88 7.69 -2.39 -0.02 0.86 16 45 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 Total: -1.00 -83.16 372.54 3.08 -80.08 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.52 Total: 33.13 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 6.71 Total: 9.23 kcal Atomic # 7 Polarization: -129.78 SS G_CDS: -5.09 Total: -134.87 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.05 Total: -32.12 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -83.16 3.08 -80.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157402113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.859 kcal (2) G-P(sol) polarization free energy of solvation -83.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds