Wall clock time and date at job start Tue Mar 31 2020 15:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52999 * 109.47214 * 2 1 4 4 H 1.08995 * 109.47223 * 55.00187 * 3 2 1 5 5 C 1.50704 * 109.47146 * 174.99922 * 3 2 1 6 6 H 1.08000 * 119.99992 * 119.99869 * 5 3 2 7 7 C 1.37876 * 119.99860 * 299.99728 * 5 3 2 8 8 N 1.31515 * 119.99852 * 179.97438 * 7 5 3 9 9 Si 1.86795 * 120.00223 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47233 * 89.99607 * 9 7 5 11 11 H 1.48502 * 109.47147 * 209.99566 * 9 7 5 12 12 H 1.48498 * 109.46993 * 329.99778 * 9 7 5 13 13 N 1.46500 * 109.47316 * 295.00004 * 3 2 1 14 14 C 1.34770 * 119.99994 * 84.99619 * 13 3 2 15 15 O 1.21581 * 120.00319 * 0.02562 * 14 13 3 16 16 C 1.47675 * 119.99998 * 180.02562 * 14 13 3 17 17 C 1.40224 * 120.49285 * 179.97438 * 16 14 13 18 18 C 1.38034 * 118.35405 * 179.77061 * 17 16 14 19 19 C 1.39163 * 119.25164 * 0.49159 * 18 17 16 20 20 N 1.39490 * 119.53131 * 179.77091 * 19 18 17 21 21 N 1.40103 * 126.10245 * 334.90694 * 20 19 18 22 22 C 1.30795 * 108.25519 * 180.26548 * 21 20 19 23 23 C 1.50697 * 125.81325 * 179.72280 * 22 21 20 24 24 C 1.40000 * 108.37768 * 359.74881 * 22 21 20 25 25 C 1.35244 * 107.97095 * 359.97438 * 24 22 21 26 26 C 1.50703 * 126.19652 * 180.02562 * 25 24 22 27 27 N 1.32439 * 120.94202 * 359.49479 * 19 18 17 28 28 C 1.31636 * 121.80249 * 0.25241 * 27 19 18 29 29 H 1.09007 * 109.47339 * 59.99918 * 1 2 3 30 30 H 1.08996 * 109.47403 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47528 * 299.99789 * 1 2 3 32 32 H 1.08999 * 109.47528 * 240.00211 * 2 1 3 33 33 H 1.08999 * 109.47045 * 119.99959 * 2 1 3 34 34 H 0.97004 * 120.00291 * 180.02562 * 8 7 5 35 35 H 0.97005 * 120.00055 * 265.00423 * 13 3 2 36 36 H 1.07996 * 120.82747 * 0.03623 * 17 16 14 37 37 H 1.07991 * 120.37792 * 180.24031 * 18 17 16 38 38 H 1.09004 * 109.47096 * 270.03296 * 23 22 21 39 39 H 1.09005 * 109.47149 * 30.02373 * 23 22 21 40 40 H 1.08991 * 109.47369 * 150.02803 * 23 22 21 41 41 H 1.08001 * 126.01474 * 180.02562 * 24 22 21 42 42 H 1.09002 * 109.47152 * 90.02669 * 26 25 24 43 43 H 1.09001 * 109.46980 * 330.02770 * 26 25 24 44 44 H 1.09004 * 109.47113 * 210.02751 * 26 25 24 45 45 H 1.07996 * 119.68090 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 5.4539 0.8795 1.3359 9 14 3.0963 0.1089 2.5701 10 1 2.8754 -1.3271 2.2634 11 1 3.7936 0.2348 3.8752 12 1 1.7876 0.8074 2.6387 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3412 2.6326 -0.4319 16 6 0.0443 3.3242 -2.6290 17 6 -1.2198 3.9167 -2.7603 18 6 -1.5372 4.5255 -3.9578 19 6 -0.6044 4.5224 -4.9905 20 7 -0.9209 5.1317 -6.2047 21 7 -2.2096 5.3338 -6.7157 22 6 -2.1018 5.9286 -7.8756 23 6 -3.2458 6.3267 -8.7722 24 6 -0.7427 6.1320 -8.1427 25 6 -0.0344 5.6387 -7.1015 26 6 1.4663 5.6442 -6.9637 27 7 0.5816 3.9538 -4.8351 28 6 0.9273 3.3668 -3.7087 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 5.8770 0.4811 2.1125 35 1 2.2719 2.1231 -1.9978 36 1 -1.9259 3.9011 -1.9433 37 1 -2.5001 4.9954 -4.0932 38 1 -3.4760 5.5072 -9.4531 39 1 -4.1225 6.5513 -8.1646 40 1 -2.9665 7.2094 -9.3473 41 1 -0.3321 6.6011 -9.0246 42 1 1.7820 6.5607 -6.4651 43 1 1.9221 5.5930 -7.9525 44 1 1.7802 4.7830 -6.3738 45 1 1.9035 2.9135 -3.6196 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183912735.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:40 Heat of formation + Delta-G solvation = 65.643159 kcal Electronic energy + Delta-G solvation = -27136.816119 eV Core-core repulsion = 23348.695078 eV Total energy + Delta-G solvation = -3788.121041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.79693 -41.60121 -40.24164 -37.17977 -35.40580 -34.47364 -33.91936 -33.55632 -33.05193 -31.47757 -29.61955 -28.78155 -28.04067 -25.41975 -25.05752 -24.39150 -22.66809 -21.51960 -21.42854 -20.84393 -19.67551 -18.80118 -18.09396 -17.94154 -17.26229 -16.72210 -16.37178 -16.21308 -16.03367 -15.39292 -15.23081 -14.96993 -14.81886 -14.64708 -14.41397 -14.30378 -14.08884 -14.02983 -13.80094 -13.74737 -13.60319 -13.29150 -13.20512 -12.96324 -12.79949 -12.76202 -12.40533 -11.85318 -11.75679 -11.45900 -11.25979 -11.23749 -11.19299 -11.05794 -10.85393 -10.64094 -10.00462 -9.84737 -9.40817 -8.36763 -6.42298 -0.82702 -0.05121 0.72092 0.98799 1.28545 1.37045 1.45951 1.66529 1.83037 2.26167 2.27862 2.63133 2.99373 3.04994 3.29880 3.55002 3.63569 3.71271 3.82625 3.94074 4.14204 4.24092 4.32826 4.41850 4.45313 4.46862 4.61911 4.68243 4.70614 4.78878 4.83122 4.87067 4.91024 5.01588 5.02469 5.10116 5.12456 5.16802 5.22627 5.29284 5.39125 5.52040 5.59851 5.61289 5.97985 6.13054 6.24848 6.59319 6.68052 6.78290 7.17815 7.34474 8.78029 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026124 B = 0.002507 C = 0.002343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.548979 B =11167.407566 C =11945.284880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.139 4.139 3 C 0.250 3.750 4 H 0.027 0.973 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.031 3.969 8 N -0.932 5.932 9 Si 0.933 3.067 10 H -0.261 1.261 11 H -0.296 1.296 12 H -0.258 1.258 13 N -0.691 5.691 14 C 0.557 3.443 15 O -0.570 6.570 16 C -0.197 4.197 17 C 0.009 3.991 18 C -0.168 4.168 19 C 0.377 3.623 20 N -0.345 5.345 21 N -0.321 5.321 22 C 0.089 3.911 23 C -0.072 4.072 24 C -0.265 4.265 25 C 0.095 3.905 26 C -0.105 4.105 27 N -0.506 5.506 28 C 0.174 3.826 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.039 0.961 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.270 0.730 35 H 0.406 0.594 36 H 0.163 0.837 37 H 0.159 0.841 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.184 0.816 42 H 0.083 0.917 43 H 0.106 0.894 44 H 0.091 0.909 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.985 9.841 -20.583 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.145 3.855 4 H 0.045 0.955 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.761 3.239 10 H -0.187 1.187 11 H -0.223 1.223 12 H -0.183 1.183 13 N -0.340 5.340 14 C 0.344 3.656 15 O -0.452 6.452 16 C -0.203 4.203 17 C -0.018 4.018 18 C -0.190 4.190 19 C 0.150 3.850 20 N -0.124 5.124 21 N -0.141 5.141 22 C -0.080 4.080 23 C -0.130 4.130 24 C -0.293 4.293 25 C -0.026 4.026 26 C -0.163 4.163 27 N -0.219 5.219 28 C 0.014 3.986 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.243 0.757 36 H 0.181 0.819 37 H 0.177 0.823 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.202 0.798 42 H 0.101 0.899 43 H 0.125 0.875 44 H 0.109 0.891 45 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -14.527 9.272 -19.586 26.089 hybrid contribution 0.371 -0.199 0.861 0.958 sum -14.156 9.073 -18.725 25.166 Atomic orbital electron populations 1.21774 0.95252 1.00608 1.01625 1.22221 0.95808 0.98418 1.01241 1.18852 0.93422 0.89688 0.83499 0.95476 1.21264 0.90165 1.38570 1.07027 0.92137 1.25518 0.95682 0.95918 0.99820 1.69970 1.10229 1.46075 1.30826 0.86079 0.79439 0.79984 0.78398 1.18650 1.22314 1.18268 1.45914 1.15205 1.55496 1.17363 1.18141 0.82044 0.78368 0.87076 1.90748 1.52246 1.61102 1.41065 1.20974 0.97677 1.05721 0.95971 1.21729 0.94493 0.88810 0.96745 1.21664 1.01850 1.03774 0.91749 1.18122 0.91089 0.91809 0.83983 1.45723 1.05448 1.46430 1.14785 1.77421 0.97646 1.25097 1.13938 1.23325 0.97465 0.94543 0.92649 1.20415 0.92589 1.03387 0.96609 1.21684 0.91962 1.13038 1.02574 1.22116 0.95373 0.95480 0.89674 1.20813 0.85291 1.04687 1.05473 1.67049 1.17294 1.11701 1.25891 1.23110 0.99274 0.90965 0.85211 0.92815 0.92361 0.94205 0.91109 0.93709 0.92123 0.75715 0.81913 0.82317 0.88884 0.90524 0.87613 0.79847 0.89869 0.87502 0.89082 0.79133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.51 71.98 0.61 -4.41 16 2 C -0.14 -5.73 5.11 30.59 0.16 -5.57 16 3 C 0.25 11.24 1.83 44.25 0.08 11.32 16 4 H 0.03 1.37 6.63 -2.39 -0.02 1.36 16 5 C -0.53 -27.85 9.31 25.60 0.24 -27.61 16 6 H 0.06 3.34 7.98 -2.91 -0.02 3.32 16 7 C 0.03 1.68 5.45 84.65 0.46 2.14 16 8 N -0.93 -54.77 13.96 21.45 0.30 -54.47 16 9 Si 0.93 43.72 24.41 68.60 1.67 45.40 16 10 H -0.26 -11.52 6.83 99.48 0.68 -10.84 16 11 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 12 H -0.26 -11.93 6.53 99.48 0.65 -11.28 16 13 N -0.69 -25.23 4.97 -449.14 -2.23 -27.46 16 14 C 0.56 19.41 6.34 86.74 0.55 19.96 16 15 O -0.57 -23.29 13.55 -3.97 -0.05 -23.34 16 16 C -0.20 -5.47 5.89 -19.99 -0.12 -5.58 16 17 C 0.01 0.22 9.70 22.70 0.22 0.44 16 18 C -0.17 -4.06 9.71 22.44 0.22 -3.84 16 19 C 0.38 9.85 7.35 132.89 0.98 10.83 16 20 N -0.35 -8.83 3.77 -180.41 -0.68 -9.51 16 21 N -0.32 -7.99 12.08 -47.33 -0.57 -8.56 16 22 C 0.09 1.66 7.21 43.14 0.31 1.97 16 23 C -0.07 -0.69 10.44 71.24 0.74 0.05 16 24 C -0.27 -4.58 10.65 22.01 0.23 -4.35 16 25 C 0.09 2.01 6.89 41.24 0.28 2.30 16 26 C -0.10 -1.73 9.98 71.24 0.71 -1.02 16 27 N -0.51 -12.75 7.61 -191.84 -1.46 -14.21 16 28 C 0.17 4.23 10.71 85.04 0.91 5.14 16 29 H 0.05 1.96 5.65 -2.38 -0.01 1.94 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.04 1.58 7.84 -2.39 -0.02 1.56 16 32 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.04 1.95 3.21 -2.39 -0.01 1.95 16 34 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.41 12.67 6.59 -92.70 -0.61 12.06 16 36 H 0.16 3.83 7.73 -2.91 -0.02 3.81 16 37 H 0.16 3.47 7.89 -2.92 -0.02 3.44 16 38 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 40 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 1.79 5.84 -2.38 -0.01 1.78 16 45 H 0.19 3.79 6.41 -2.91 -0.02 3.78 16 Total: -1.00 -69.60 365.04 3.90 -65.70 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.34 Total: 24.72 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 6.59 Total: 1.75 kcal Atomic # 7 Polarization: -109.58 SS G_CDS: -4.65 Total: -114.22 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.34 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.67 Total: 45.40 kcal Total: -69.60 3.90 -65.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183912735.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.340 kcal (2) G-P(sol) polarization free energy of solvation -69.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds