Wall clock time and date at job start Tue Mar 31 2020 14:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47000 * 2 1 4 4 H 1.08999 * 109.47091 * 55.00324 * 3 2 1 5 5 N 1.46499 * 109.47341 * 295.00080 * 3 2 1 6 6 C 1.34777 * 119.99665 * 85.27876 * 5 3 2 7 7 O 1.21593 * 120.00264 * 359.72086 * 6 5 3 8 8 N 1.34775 * 119.99585 * 179.72218 * 6 5 3 9 9 C 1.40194 * 119.99802 * 179.97438 * 8 6 5 10 10 C 1.40400 * 125.97293 * 359.72185 * 9 8 6 11 11 C 1.35248 * 107.86725 * 179.82137 * 10 9 8 12 12 N 1.34963 * 107.85681 * 0.43345 * 11 10 9 13 13 C 1.46504 * 125.97615 * 179.70559 * 12 11 10 14 14 C 1.50702 * 109.47233 * 124.99704 * 13 12 11 15 15 H 1.07992 * 119.99696 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99833 * 180.02562 * 14 13 12 17 17 N 1.31515 * 119.99905 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 120.00051 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47093 * 90.00618 * 18 16 14 20 20 H 1.48502 * 109.47232 * 210.00407 * 18 16 14 21 21 H 1.48501 * 109.47387 * 330.00788 * 18 16 14 22 22 N 1.31217 * 125.97300 * 180.02562 * 9 8 6 23 23 C 1.50706 * 109.46812 * 174.99913 * 3 2 1 24 24 C 1.38233 * 119.99616 * 79.73171 * 23 3 2 25 25 C 1.38241 * 119.99525 * 179.78507 * 24 23 3 26 26 C 1.38232 * 120.00243 * 0.44297 * 25 24 23 27 27 C 1.38240 * 119.99658 * 359.80571 * 26 25 24 28 28 C 1.38227 * 120.00252 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.46986 * 299.99873 * 1 2 3 30 30 H 1.09003 * 109.47322 * 59.99862 * 1 2 3 31 31 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46986 * 240.00127 * 2 1 3 33 33 H 1.08994 * 109.47111 * 120.00040 * 2 1 3 34 34 H 0.97001 * 119.99790 * 264.99588 * 5 3 2 35 35 H 0.97000 * 120.00523 * 0.02562 * 8 6 5 36 36 H 1.07998 * 126.06762 * 359.97438 * 10 9 8 37 37 H 1.08003 * 126.06916 * 180.15698 * 11 10 9 38 38 H 1.09000 * 109.47116 * 244.99960 * 13 12 11 39 39 H 1.08999 * 109.46767 * 4.99583 * 13 12 11 40 40 H 0.96998 * 120.00093 * 179.97438 * 17 16 14 41 41 H 1.07994 * 120.00497 * 359.97438 * 24 23 3 42 42 H 1.08003 * 119.99788 * 180.27457 * 25 24 23 43 43 H 1.08000 * 120.00476 * 179.83761 * 26 25 24 44 44 H 1.08005 * 119.99444 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00141 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 7 1.6524 2.0975 -1.2518 6 6 0.4371 2.6693 -1.3649 7 8 -0.3394 2.6371 -0.4298 8 7 0.0827 3.2768 -2.5146 9 6 -1.1815 3.8711 -2.6325 10 6 -2.1738 3.9027 -1.6397 11 6 -3.2396 4.5688 -2.1394 12 7 -2.9418 4.9378 -3.4030 13 6 -3.8201 5.6769 -4.3133 14 6 -3.1095 6.9116 -4.8048 15 1 -2.1042 7.1243 -4.4727 16 6 -3.7429 7.7697 -5.6786 17 7 -3.1227 8.8470 -6.1079 18 14 -5.4816 7.4014 -6.2536 19 1 -6.4541 8.0288 -5.3231 20 1 -5.6781 7.9506 -7.6193 21 1 -5.6949 5.9319 -6.2756 22 7 -1.6464 4.4903 -3.6919 23 6 3.5419 1.4442 0.1239 24 6 4.3272 1.1975 -0.9867 25 6 5.7050 1.2035 -0.8740 26 6 6.2972 1.4472 0.3511 27 6 5.5117 1.6888 1.4626 28 6 4.1341 1.6873 1.3491 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2719 2.1232 -1.9977 35 1 0.7020 3.3022 -3.2607 36 1 -2.0984 3.4736 -0.6515 37 1 -4.1663 4.7660 -1.6209 38 1 -4.0785 5.0441 -5.1624 39 1 -4.7290 5.9664 -3.7860 40 1 -3.5682 9.4505 -6.7229 41 1 3.8645 1.0031 -1.9429 42 1 6.3186 1.0151 -1.7425 43 1 7.3736 1.4493 0.4397 44 1 5.9745 1.8788 2.4198 45 1 3.5205 1.8757 2.2176 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266484827.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:16 Heat of formation + Delta-G solvation = 62.837981 kcal Electronic energy + Delta-G solvation = -26762.970389 eV Core-core repulsion = 22974.727707 eV Total energy + Delta-G solvation = -3788.242683 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.26390 -41.29393 -40.02994 -37.16596 -36.00549 -35.21560 -33.63401 -32.61081 -31.91091 -31.71216 -30.91495 -28.94949 -27.07635 -24.69515 -23.70688 -23.34497 -22.91680 -21.98185 -21.30538 -21.18096 -19.35415 -19.07045 -18.30296 -17.71666 -17.20065 -16.96744 -16.48779 -16.20086 -16.08591 -15.52210 -15.40857 -15.35801 -14.81954 -14.61908 -14.47586 -14.33731 -14.20872 -13.90354 -13.81989 -13.77755 -13.25068 -12.96430 -12.79762 -12.52809 -12.48192 -12.27890 -11.96336 -11.82375 -11.81987 -11.71898 -11.53583 -11.41115 -11.03201 -10.86153 -10.18937 -9.80686 -9.72217 -9.63874 -9.01038 -8.36752 -6.46800 0.37835 0.51266 1.07656 1.17469 1.37151 1.40580 1.50107 1.73701 2.12214 2.29688 2.44346 2.87973 2.95759 3.16982 3.55923 3.95271 3.96091 4.09983 4.20177 4.23278 4.25271 4.30977 4.47079 4.59767 4.62415 4.67431 4.72826 4.83080 4.87397 4.95168 4.96724 5.02580 5.08739 5.16218 5.17391 5.20727 5.26290 5.43955 5.52567 5.57758 5.64999 5.71941 5.83381 5.95150 6.04591 6.11004 6.43700 6.58673 6.73965 7.14087 7.16829 7.46221 8.80420 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.002221 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.319890 B =12604.637234 C =13398.779696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.210 3.790 4 H 0.083 0.917 5 N -0.719 5.719 6 C 0.714 3.286 7 O -0.586 6.586 8 N -0.641 5.641 9 C 0.287 3.713 10 C -0.291 4.291 11 C 0.058 3.942 12 N -0.346 5.346 13 C 0.240 3.760 14 C -0.546 4.546 15 H 0.026 0.974 16 C 0.013 3.987 17 N -0.943 5.943 18 Si 0.956 3.044 19 H -0.253 1.253 20 H -0.281 1.281 21 H -0.239 1.239 22 N -0.352 5.352 23 C -0.100 4.100 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.119 4.119 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.408 0.592 35 H 0.418 0.582 36 H 0.170 0.830 37 H 0.209 0.791 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.272 0.728 41 H 0.133 0.867 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.636 -20.537 14.190 28.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.105 3.895 4 H 0.101 0.899 5 N -0.376 5.376 6 C 0.414 3.586 7 O -0.463 6.463 8 N -0.292 5.292 9 C 0.031 3.969 10 C -0.322 4.322 11 C -0.089 4.089 12 N -0.128 5.128 13 C 0.120 3.880 14 C -0.584 4.584 15 H 0.044 0.956 16 C -0.186 4.186 17 N -0.582 5.582 18 Si 0.777 3.223 19 H -0.177 1.177 20 H -0.206 1.206 21 H -0.162 1.162 22 N -0.183 5.183 23 C -0.101 4.101 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.137 4.137 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.104 0.896 34 H 0.246 0.754 35 H 0.254 0.746 36 H 0.187 0.813 37 H 0.226 0.774 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.081 0.919 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.113 -20.009 13.682 28.049 hybrid contribution 0.029 0.406 -0.517 0.658 sum 14.142 -19.603 13.165 27.524 Atomic orbital electron populations 1.21732 0.95760 1.00571 1.01699 1.21911 0.95742 0.94799 1.03429 1.19732 0.90316 0.93652 0.85794 0.89866 1.45074 1.14551 1.59942 1.18077 1.15668 0.83087 0.78081 0.81755 1.90843 1.51926 1.64581 1.38938 1.41453 1.13673 1.57362 1.16727 1.19112 0.87523 0.96617 0.93683 1.21733 0.93400 1.14042 1.02991 1.23242 1.02002 0.97885 0.85805 1.48468 1.10220 1.42318 1.11796 1.19867 0.88571 0.90107 0.89453 1.21235 1.01590 1.06685 1.28862 0.95607 1.25936 1.03653 0.93940 0.95037 1.70053 1.40401 1.14120 1.33603 0.85608 0.77777 0.80568 0.78370 1.17735 1.20645 1.16237 1.77301 0.96235 1.21998 1.22752 1.19869 0.93756 1.01570 0.94878 1.21140 0.94239 1.00047 0.98440 1.21440 0.94743 0.99421 0.98599 1.21523 1.01083 0.98943 0.92847 1.21427 0.93442 0.99498 0.99862 1.21217 0.95668 0.99656 0.97194 0.93330 0.94433 0.92662 0.90871 0.89640 0.75426 0.74582 0.81288 0.77414 0.93730 0.90109 0.91907 0.84874 0.84166 0.84200 0.84208 0.85126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.52 71.98 0.61 -2.37 16 2 C -0.12 -1.94 5.59 30.59 0.17 -1.77 16 3 C 0.21 3.70 2.46 44.25 0.11 3.81 16 4 H 0.08 1.78 7.43 -2.39 -0.02 1.77 16 5 N -0.72 -13.99 4.98 -461.40 -2.30 -16.29 16 6 C 0.71 20.08 7.11 179.05 1.27 21.36 16 7 O -0.59 -19.54 10.62 -4.01 -0.04 -19.58 16 8 N -0.64 -19.83 5.46 -321.23 -1.75 -21.58 16 9 C 0.29 11.52 8.11 133.31 1.08 12.60 16 10 C -0.29 -11.16 9.61 22.11 0.21 -10.94 16 11 C 0.06 2.19 11.44 83.52 0.96 3.14 16 12 N -0.35 -15.70 3.67 -351.83 -1.29 -16.99 16 13 C 0.24 11.22 5.33 85.63 0.46 11.67 16 14 C -0.55 -31.79 9.79 25.60 0.25 -31.54 16 15 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 16 C 0.01 0.74 5.47 84.65 0.46 1.20 16 17 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 18 Si 0.96 40.97 27.47 68.60 1.88 42.86 16 19 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 21 H -0.24 -9.25 6.54 99.48 0.65 -8.60 16 22 N -0.35 -16.55 12.42 -54.43 -0.68 -17.22 16 23 C -0.10 -1.51 4.95 -19.86 -0.10 -1.61 16 24 C -0.12 -1.56 9.05 22.27 0.20 -1.36 16 25 C -0.12 -1.45 10.05 22.27 0.22 -1.23 16 26 C -0.13 -1.43 10.05 22.27 0.22 -1.21 16 27 C -0.12 -1.52 10.05 22.27 0.22 -1.30 16 28 C -0.12 -1.70 9.67 22.27 0.22 -1.49 16 29 H 0.05 1.15 7.85 -2.39 -0.02 1.13 16 30 H 0.04 0.98 5.66 -2.39 -0.01 0.97 16 31 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.41 5.87 6.90 -92.71 -0.64 5.23 16 35 H 0.42 10.68 8.84 -92.71 -0.82 9.86 16 36 H 0.17 6.28 5.91 -2.91 -0.02 6.26 16 37 H 0.21 5.74 8.06 -2.91 -0.02 5.71 16 38 H 0.04 2.04 7.20 -2.39 -0.02 2.03 16 39 H 0.08 3.25 7.50 -2.39 -0.02 3.23 16 40 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 41 H 0.13 1.30 6.93 -2.91 -0.02 1.28 16 42 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 43 H 0.14 1.00 8.06 -2.91 -0.02 0.98 16 44 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 45 H 0.13 1.62 8.04 -2.91 -0.02 1.60 16 Total: -1.00 -77.59 371.82 2.21 -75.38 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -0.49 Total: 32.64 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 6.57 Total: -1.02 kcal Atomic # 7 Polarization: -124.56 SS G_CDS: -5.72 Total: -130.27 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.04 Total: -19.58 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 1.88 Total: 42.86 kcal Total: -77.59 2.21 -75.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266484827.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.219 kcal (2) G-P(sol) polarization free energy of solvation -77.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds