Wall clock time and date at job start Tue Mar 31 2020 14:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47545 * 2 1 4 4 H 1.09006 * 109.46778 * 305.00143 * 3 2 1 5 5 N 1.46494 * 109.47124 * 65.00051 * 3 2 1 6 6 C 1.34780 * 120.00332 * 275.00157 * 5 3 2 7 7 O 1.21596 * 119.99507 * 0.02562 * 6 5 3 8 8 N 1.34768 * 120.00292 * 180.02562 * 6 5 3 9 9 C 1.40201 * 120.00142 * 180.02562 * 8 6 5 10 10 C 1.40396 * 125.97176 * 359.97438 * 9 8 6 11 11 C 1.35243 * 107.86896 * 179.97438 * 10 9 8 12 12 N 1.34962 * 107.85356 * 0.22585 * 11 10 9 13 13 C 1.46501 * 125.97082 * 179.76577 * 12 11 10 14 14 C 1.50703 * 109.46706 * 125.00181 * 13 12 11 15 15 H 1.07992 * 120.00189 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99721 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00333 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99825 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47276 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.47061 * 120.00332 * 18 16 14 21 21 H 1.48495 * 109.47500 * 240.00143 * 18 16 14 22 22 N 1.31202 * 125.97171 * 179.97438 * 9 8 6 23 23 C 1.50702 * 109.47355 * 185.00436 * 3 2 1 24 24 C 1.38236 * 119.99695 * 279.72403 * 23 3 2 25 25 C 1.38232 * 119.99697 * 179.78746 * 24 23 3 26 26 C 1.38238 * 120.00282 * 0.44714 * 25 24 23 27 27 C 1.38235 * 119.99759 * 359.80546 * 26 25 24 28 28 C 1.38229 * 120.00202 * 99.99922 * 23 3 2 29 29 H 1.08990 * 109.47129 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46763 * 300.00235 * 1 2 3 31 31 H 1.09001 * 109.46923 * 59.99739 * 1 2 3 32 32 H 1.09002 * 109.46969 * 240.00278 * 2 1 3 33 33 H 1.09000 * 109.47826 * 120.00355 * 2 1 3 34 34 H 0.96998 * 120.00015 * 95.00182 * 5 3 2 35 35 H 0.96998 * 120.00056 * 359.97438 * 8 6 5 36 36 H 1.08003 * 126.06768 * 359.93842 * 10 9 8 37 37 H 1.08002 * 126.06857 * 179.97438 * 11 10 9 38 38 H 1.09000 * 109.47836 * 245.00121 * 13 12 11 39 39 H 1.08997 * 109.47518 * 5.00660 * 13 12 11 40 40 H 0.96995 * 120.00331 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.00138 * 0.02562 * 24 23 3 42 42 H 1.08004 * 119.99992 * 180.27113 * 25 24 23 43 43 H 1.08000 * 120.00173 * 179.83872 * 26 25 24 44 44 H 1.07998 * 120.00130 * 180.02562 * 27 26 25 45 45 H 1.08007 * 119.99998 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 7 1.6526 2.0974 1.2518 6 6 0.4353 2.6644 1.3670 7 8 -0.3415 2.6319 0.4320 8 7 0.0790 3.2674 2.5184 9 6 -1.1875 3.8568 2.6384 10 6 -2.1780 3.8926 1.6441 11 6 -3.2486 4.5474 2.1482 12 7 -2.9498 4.9182 3.4110 13 6 -3.8281 5.6570 4.3215 14 6 -3.9847 4.8841 5.6057 15 1 -3.4802 3.9376 5.7313 16 6 -4.7714 5.3860 6.6208 17 7 -5.3855 6.5389 6.4682 18 14 -4.9661 4.4277 8.2124 19 1 -4.1791 3.1709 8.1329 20 1 -4.4738 5.2485 9.3478 21 1 -6.3997 4.1021 8.4220 22 7 -1.6541 4.4712 3.6996 23 6 3.5420 1.4442 -0.1239 24 6 4.3275 1.2086 0.9888 25 6 5.7051 1.2058 0.8743 26 6 6.2973 1.4479 -0.3511 27 6 5.5118 1.6887 -1.4628 28 6 4.1341 1.6871 -1.3491 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.2721 2.1231 1.9977 35 1 0.6985 3.2931 3.2643 36 1 -2.0988 3.4723 0.6523 37 1 -4.1761 4.7427 1.6305 38 1 -3.3918 6.6327 4.5356 39 1 -4.8048 5.7900 3.8562 40 1 -5.9392 6.8918 7.1821 41 1 3.8650 1.0228 1.9469 42 1 6.3188 1.0174 1.7428 43 1 7.3736 1.4483 -0.4401 44 1 5.9744 1.8774 -2.4203 45 1 3.5204 1.8752 -2.2178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266484828.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:20 Heat of formation + Delta-G solvation = 59.574615 kcal Electronic energy + Delta-G solvation = -26752.673183 eV Core-core repulsion = 22964.288990 eV Total energy + Delta-G solvation = -3788.384193 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.24476 -41.28057 -40.02045 -37.15423 -36.00525 -35.28237 -33.53911 -32.38551 -31.89542 -31.68589 -30.88698 -28.56658 -27.07156 -25.03414 -23.72972 -23.35843 -22.90881 -22.01689 -21.29306 -21.17728 -19.31365 -18.68740 -18.30243 -17.68508 -17.16265 -16.98674 -16.55745 -16.10804 -15.96786 -15.77173 -15.42898 -15.34078 -14.68444 -14.53191 -14.43031 -14.22393 -14.15566 -13.89986 -13.77553 -13.63020 -13.22452 -12.92862 -12.79572 -12.72612 -12.47951 -12.29940 -12.06678 -11.95503 -11.77578 -11.69734 -11.56903 -11.34051 -11.02129 -10.71697 -10.18118 -9.80004 -9.70768 -9.63238 -9.02637 -8.32208 -6.46296 0.38531 0.51954 1.11102 1.18387 1.37331 1.38707 1.51965 1.74965 2.14030 2.36525 2.45553 2.88766 2.99053 3.18467 3.56521 3.96508 3.99548 4.10349 4.20719 4.24996 4.30483 4.31677 4.47083 4.60186 4.67906 4.73921 4.82507 4.91960 4.94615 4.97823 5.02443 5.03117 5.09527 5.16808 5.17868 5.22222 5.44239 5.52066 5.57931 5.58542 5.65679 5.72752 5.78046 5.90294 6.00960 6.11671 6.31606 6.65156 6.77800 7.17541 7.23587 7.47739 8.75337 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.002193 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.461232 B =12763.940897 C =13142.645421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.210 3.790 4 H 0.084 0.916 5 N -0.719 5.719 6 C 0.714 3.286 7 O -0.586 6.586 8 N -0.639 5.639 9 C 0.287 3.713 10 C -0.290 4.290 11 C 0.054 3.946 12 N -0.346 5.346 13 C 0.273 3.727 14 C -0.545 4.545 15 H 0.052 0.948 16 C 0.017 3.983 17 N -0.921 5.921 18 Si 0.972 3.028 19 H -0.275 1.275 20 H -0.273 1.273 21 H -0.270 1.270 22 N -0.350 5.350 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.124 4.124 28 C -0.118 4.118 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.409 0.591 35 H 0.418 0.582 36 H 0.169 0.831 37 H 0.199 0.801 38 H 0.021 0.979 39 H 0.058 0.942 40 H 0.272 0.728 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.479 -12.843 -15.013 29.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.159 4.159 3 C 0.105 3.895 4 H 0.102 0.898 5 N -0.376 5.376 6 C 0.414 3.586 7 O -0.464 6.464 8 N -0.291 5.291 9 C 0.031 3.969 10 C -0.321 4.321 11 C -0.094 4.094 12 N -0.128 5.128 13 C 0.154 3.846 14 C -0.583 4.583 15 H 0.070 0.930 16 C -0.183 4.183 17 N -0.560 5.560 18 Si 0.797 3.203 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.195 1.195 22 N -0.181 5.181 23 C -0.100 4.100 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.142 4.142 28 C -0.137 4.137 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.246 0.754 35 H 0.255 0.745 36 H 0.186 0.814 37 H 0.216 0.784 38 H 0.039 0.961 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.151 0.849 42 H 0.158 0.842 43 H 0.158 0.842 44 H 0.158 0.842 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 21.844 -12.326 -14.527 28.985 hybrid contribution -0.072 -0.229 0.860 0.893 sum 21.772 -12.554 -13.667 28.608 Atomic orbital electron populations 1.21735 0.95905 1.00500 1.01680 1.21916 0.95589 0.95012 1.03409 1.19721 0.90374 0.93510 0.85849 0.89763 1.45062 1.14393 1.60108 1.18061 1.15676 0.83057 0.78105 0.81801 1.90850 1.51966 1.64435 1.39106 1.41420 1.13418 1.57650 1.16577 1.19063 0.87411 0.97179 0.93241 1.21687 0.93275 1.14128 1.03014 1.23153 1.01532 0.98644 0.86097 1.48796 1.10232 1.42508 1.11248 1.19323 0.87031 0.90419 0.87850 1.21426 1.30112 1.06575 1.00199 0.93001 1.25754 0.94513 0.96009 1.02070 1.69999 1.31412 1.19473 1.35092 0.85290 0.78236 0.78386 0.78430 1.19933 1.19835 1.19516 1.77237 0.96276 1.22738 1.21834 1.19851 0.93660 1.01609 0.94871 1.21135 0.94255 1.00090 0.98404 1.21434 0.94712 0.99409 0.98617 1.21522 1.01081 0.98930 0.92838 1.21426 0.93422 0.99500 0.99848 1.21216 0.95668 0.99623 0.97179 0.92825 0.94561 0.93256 0.89601 0.90959 0.75394 0.74491 0.81388 0.78377 0.96140 0.92409 0.91860 0.84942 0.84178 0.84192 0.84191 0.85108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.51 71.98 0.61 -2.54 16 2 C -0.12 -2.01 5.59 30.59 0.17 -1.84 16 3 C 0.21 3.67 2.46 44.25 0.11 3.78 16 4 H 0.08 1.77 7.44 -2.38 -0.02 1.75 16 5 N -0.72 -13.74 4.98 -461.41 -2.30 -16.04 16 6 C 0.71 19.94 7.10 179.06 1.27 21.22 16 7 O -0.59 -19.68 10.60 -4.02 -0.04 -19.73 16 8 N -0.64 -19.51 5.45 -321.24 -1.75 -21.26 16 9 C 0.29 11.57 8.11 133.31 1.08 12.65 16 10 C -0.29 -11.48 9.61 22.10 0.21 -11.27 16 11 C 0.05 2.17 11.44 83.52 0.96 3.13 16 12 N -0.35 -16.49 3.67 -351.84 -1.29 -17.78 16 13 C 0.27 14.33 6.26 85.63 0.54 14.86 16 14 C -0.54 -31.05 9.23 25.60 0.24 -30.81 16 15 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.02 0.93 5.46 84.66 0.46 1.39 16 17 N -0.92 -52.53 13.29 21.45 0.28 -52.24 16 18 Si 0.97 43.92 29.54 68.60 2.03 45.94 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 21 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 22 N -0.35 -16.47 12.42 -54.44 -0.68 -17.15 16 23 C -0.10 -1.45 4.96 -19.87 -0.10 -1.55 16 24 C -0.12 -1.50 9.06 22.27 0.20 -1.30 16 25 C -0.12 -1.37 10.05 22.27 0.22 -1.14 16 26 C -0.13 -1.34 10.05 22.27 0.22 -1.12 16 27 C -0.12 -1.43 10.05 22.27 0.22 -1.21 16 28 C -0.12 -1.62 9.67 22.27 0.22 -1.40 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.04 1.00 5.64 -2.39 -0.01 0.99 16 31 H 0.05 1.21 7.84 -2.39 -0.02 1.19 16 32 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.41 5.65 6.87 -92.71 -0.64 5.02 16 35 H 0.42 10.32 8.84 -92.71 -0.82 9.50 16 36 H 0.17 6.44 5.91 -2.91 -0.02 6.43 16 37 H 0.20 6.33 8.06 -2.91 -0.02 6.31 16 38 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 2.97 8.07 -2.39 -0.02 2.95 16 40 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 41 H 0.13 1.24 6.90 -2.91 -0.02 1.22 16 42 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 43 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 44 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 45 H 0.13 1.54 8.04 -2.91 -0.02 1.51 16 Total: -1.00 -70.76 375.33 2.46 -68.30 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: -0.43 Total: 27.10 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 6.64 Total: 2.86 kcal Atomic # 7 Polarization: -118.74 SS G_CDS: -5.73 Total: -124.47 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.04 Total: -19.73 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -70.76 2.46 -68.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266484828.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.877 kcal (2) G-P(sol) polarization free energy of solvation -70.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds