Wall clock time and date at job start Tue Mar 31 2020 15:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47107 * 2 1 4 4 N 1.46504 * 109.47001 * 119.99960 * 2 1 3 5 5 N 1.39795 * 125.34160 * 299.99629 * 4 2 1 6 6 C 1.30199 * 110.13229 * 179.97438 * 5 4 2 7 7 C 1.45970 * 107.58656 * 0.02562 * 6 5 4 8 8 C 1.39665 * 134.12215 * 180.27714 * 7 6 5 9 9 C 1.39500 * 117.95023 * 180.17720 * 8 7 6 10 10 C 1.47691 * 120.40811 * 179.78982 * 9 8 7 11 11 O 1.21571 * 119.99708 * 4.86956 * 10 9 8 12 12 N 1.34771 * 119.99780 * 184.86902 * 10 9 8 13 13 C 1.46502 * 119.99747 * 185.07094 * 12 10 9 14 14 C 1.52999 * 109.47108 * 184.99988 * 13 12 10 15 15 C 1.50698 * 115.55501 * 54.23984 * 14 13 12 16 16 H 1.07999 * 120.00493 * 215.59895 * 15 14 13 17 17 C 1.37879 * 119.99412 * 35.31360 * 15 14 13 18 18 N 1.31509 * 120.00476 * 355.79190 * 17 15 14 19 19 Si 1.86804 * 119.99554 * 175.78156 * 17 15 14 20 20 H 1.48499 * 109.46982 * 90.00738 * 19 17 15 21 21 H 1.48497 * 109.46976 * 210.00317 * 19 17 15 22 22 H 1.48497 * 109.47259 * 330.00618 * 19 17 15 23 23 C 1.53005 * 117.49878 * 199.91418 * 14 13 12 24 24 C 1.53006 * 117.49676 * 268.57306 * 14 13 12 25 25 C 1.40183 * 119.18085 * 359.51038 * 9 8 7 26 26 N 1.31185 * 121.37787 * 0.25305 * 25 9 8 27 27 C 1.32934 * 121.84399 * 0.02562 * 26 25 9 28 28 H 1.09002 * 109.46761 * 300.00029 * 1 2 3 29 29 H 1.08996 * 109.46728 * 59.99842 * 1 2 3 30 30 H 1.09000 * 109.46943 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46761 * 239.99971 * 2 1 3 32 32 H 1.08993 * 109.47072 * 300.00055 * 3 2 1 33 33 H 1.09004 * 109.46847 * 60.00167 * 3 2 1 34 34 H 1.09002 * 109.46929 * 179.97438 * 3 2 1 35 35 H 1.08001 * 126.20686 * 179.97438 * 6 5 4 36 36 H 1.08003 * 121.02250 * 359.96556 * 8 7 6 37 37 H 0.97003 * 120.00564 * 5.07872 * 12 10 9 38 38 H 1.08997 * 109.46806 * 65.00011 * 13 12 10 39 39 H 1.08996 * 109.47149 * 304.99991 * 13 12 10 40 40 H 0.97001 * 120.00469 * 184.99705 * 18 17 15 41 41 H 1.09004 * 117.49720 * 215.00228 * 23 14 13 42 42 H 1.08998 * 117.49658 * 0.02562 * 23 14 13 43 43 H 1.08995 * 117.50148 * 359.97387 * 24 14 13 44 44 H 1.08999 * 117.49875 * 144.97882 * 24 14 13 45 45 H 1.08008 * 119.30930 * 180.27127 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7504 -0.3115 2.5148 6 6 2.3297 -1.1319 3.3435 7 6 3.0375 -2.1326 2.5509 8 6 3.8189 -3.2468 2.8649 9 6 4.3516 -3.9898 1.8112 10 6 5.1896 -5.1756 2.0812 11 8 5.3463 -5.5618 3.2232 12 7 5.7804 -5.8295 1.0615 13 6 6.5194 -7.0685 1.3162 14 6 7.1908 -7.5369 0.0236 15 6 8.0725 -6.5211 -0.6559 16 1 8.1187 -6.4813 -1.7342 17 6 8.8158 -5.6387 0.0990 18 7 8.6931 -5.6279 1.4083 19 14 9.9977 -4.4588 -0.7381 20 1 9.2882 -3.1956 -1.0637 21 1 11.1341 -4.1676 0.1723 22 1 10.5101 -5.0752 -1.9881 23 6 7.6091 -9.0060 -0.0631 24 6 6.4087 -8.5029 -0.8687 25 6 4.0769 -3.6003 0.4928 26 7 3.3346 -2.5508 0.2312 27 6 2.8077 -1.8058 1.1980 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 2.2939 -1.0806 4.4217 36 1 4.0078 -3.5227 3.8918 37 1 5.7164 -5.4798 0.1590 38 1 5.8305 -7.8369 1.6669 39 1 7.2800 -6.8883 2.0759 40 1 9.1604 -4.9598 1.9338 41 1 8.5222 -9.2378 -0.6115 42 1 7.4057 -9.6390 0.8007 43 1 5.4162 -8.8051 -0.5347 44 1 6.5317 -8.4035 -1.9472 45 1 4.4846 -4.1766 -0.3246 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431179015.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:47 Heat of formation + Delta-G solvation = 73.775669 kcal Electronic energy + Delta-G solvation = -27550.596235 eV Core-core repulsion = 23762.827847 eV Total energy + Delta-G solvation = -3787.768389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70553 -40.65823 -39.00944 -38.27225 -36.57350 -34.80481 -34.09804 -33.70750 -31.51124 -30.78737 -28.23735 -27.87890 -27.22258 -24.97077 -24.66108 -23.90821 -22.92326 -21.44415 -21.07506 -20.81635 -19.06174 -18.84482 -18.09816 -17.44169 -16.77227 -16.74708 -16.66295 -16.09823 -15.82674 -15.56782 -15.49399 -15.01720 -14.74899 -14.51104 -14.32757 -14.17800 -14.08513 -13.63257 -13.47558 -13.30162 -13.15600 -13.08115 -12.89391 -12.56804 -12.52074 -12.44357 -12.26928 -11.99261 -11.85772 -11.55685 -11.54359 -11.08238 -10.85336 -10.63381 -10.48893 -10.16394 -10.11358 -9.69099 -9.31883 -7.90497 -6.16290 -0.33936 -0.24520 1.03163 1.38101 1.41952 1.47712 1.54154 1.97411 2.41965 2.46985 2.82418 2.99881 3.10290 3.17913 3.53522 3.66779 3.74404 3.77308 3.92590 3.93180 4.08534 4.19587 4.28226 4.33903 4.42138 4.59120 4.64632 4.69892 4.77162 4.79265 4.82813 4.86601 4.97754 5.01670 5.06058 5.17689 5.19628 5.22656 5.36281 5.40729 5.58047 5.65322 5.73852 5.90541 6.05024 6.31874 6.41351 6.71433 6.81091 6.98715 7.48927 7.52637 8.94456 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014687 B = 0.003199 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.938240 B = 8750.132637 C = 9285.501495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.151 3.849 3 C -0.153 4.153 4 N -0.387 5.387 5 N -0.250 5.250 6 C 0.105 3.895 7 C -0.247 4.247 8 C 0.071 3.929 9 C -0.235 4.235 10 C 0.559 3.441 11 O -0.594 6.594 12 N -0.672 5.672 13 C 0.175 3.825 14 C 0.008 3.992 15 C -0.503 4.503 16 H 0.059 0.941 17 C 0.039 3.961 18 N -0.887 5.887 19 Si 0.942 3.058 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.270 1.270 23 C -0.201 4.201 24 C -0.185 4.185 25 C 0.207 3.793 26 N -0.517 5.517 27 C 0.308 3.692 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.048 0.952 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.243 0.757 36 H 0.160 0.840 37 H 0.402 0.598 38 H 0.022 0.978 39 H 0.082 0.918 40 H 0.255 0.745 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.522 11.565 -1.313 19.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.051 3.949 3 C -0.211 4.211 4 N -0.178 5.178 5 N -0.061 5.061 6 C -0.093 4.093 7 C -0.258 4.258 8 C 0.042 3.958 9 C -0.243 4.243 10 C 0.346 3.654 11 O -0.477 6.477 12 N -0.318 5.318 13 C 0.052 3.948 14 C 0.007 3.993 15 C -0.541 4.541 16 H 0.077 0.923 17 C -0.163 4.163 18 N -0.523 5.523 19 Si 0.769 3.231 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.194 1.194 23 C -0.239 4.239 24 C -0.222 4.222 25 C 0.036 3.964 26 N -0.231 5.231 27 C 0.068 3.932 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.067 0.933 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.085 0.915 34 H 0.063 0.937 35 H 0.259 0.741 36 H 0.178 0.822 37 H 0.238 0.762 38 H 0.040 0.960 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.105 0.895 44 H 0.102 0.898 45 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -16.319 12.787 -1.504 20.787 hybrid contribution 1.783 -0.522 0.156 1.865 sum -14.536 12.266 -1.347 19.067 Atomic orbital electron populations 1.22087 0.92001 1.02455 1.04350 1.21627 0.96398 0.94145 0.82732 1.22100 1.00819 0.93772 1.04375 1.48778 1.42167 1.21324 1.05502 1.76611 1.20519 1.22043 0.86932 1.25752 0.92809 0.89290 1.01493 1.20677 1.08884 1.01931 0.94258 1.21267 0.86315 0.87833 1.00401 1.20684 1.07051 1.00767 0.95765 1.18057 0.79788 0.82728 0.84817 1.90671 1.65201 1.69272 1.22547 1.45436 1.50727 1.25661 1.09972 1.20782 0.92966 0.82731 0.98354 1.19267 0.97487 0.88788 0.93764 1.20698 1.24406 1.16477 0.92482 0.92302 1.25516 0.97296 0.98414 0.95066 1.70035 1.42686 1.34300 1.05324 0.85798 0.79243 0.79614 0.78440 1.20318 1.21991 1.19432 1.22965 0.98324 1.00494 1.02150 1.22962 0.94832 1.06831 0.97609 1.23094 0.88520 0.89439 0.95303 1.66709 1.13990 1.07475 1.34975 1.19501 0.92677 0.89979 0.91055 0.91565 0.88041 0.93313 0.87807 0.88005 0.91532 0.93670 0.74063 0.82224 0.76211 0.96024 0.89972 0.93465 0.90601 0.90540 0.89507 0.89759 0.80050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.43 71.98 0.68 -1.53 16 2 C 0.15 2.84 3.67 44.99 0.16 3.00 16 3 C -0.15 -2.36 9.43 71.98 0.68 -1.68 16 4 N -0.39 -9.54 3.31 -324.41 -1.07 -10.61 16 5 N -0.25 -5.70 12.20 -53.08 -0.65 -6.35 16 6 C 0.10 2.12 12.30 86.94 1.07 3.19 16 7 C -0.25 -6.64 6.36 -20.24 -0.13 -6.77 16 8 C 0.07 2.09 9.76 22.92 0.22 2.31 16 9 C -0.24 -7.94 5.89 -20.00 -0.12 -8.06 16 10 C 0.56 23.11 7.76 86.74 0.67 23.78 16 11 O -0.59 -28.43 16.39 -3.94 -0.06 -28.50 16 12 N -0.67 -27.94 4.97 -466.13 -2.32 -30.25 16 13 C 0.18 8.10 4.62 86.38 0.40 8.50 16 14 C 0.01 0.34 2.04 -52.92 -0.11 0.23 16 15 C -0.50 -24.64 8.44 25.60 0.22 -24.42 16 16 H 0.06 2.86 7.82 -2.91 -0.02 2.83 16 17 C 0.04 1.96 5.31 84.66 0.45 2.41 16 18 N -0.89 -47.34 10.11 21.45 0.22 -47.12 16 19 Si 0.94 41.04 29.54 68.60 2.03 43.06 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C -0.20 -8.30 9.96 30.62 0.30 -8.00 16 24 C -0.19 -7.03 9.92 30.62 0.30 -6.73 16 25 C 0.21 6.34 10.66 85.26 0.91 7.25 16 26 N -0.52 -15.75 10.35 -191.96 -1.99 -17.74 16 27 C 0.31 8.92 7.91 134.17 1.06 9.98 16 28 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 2.03 8.04 -2.39 -0.02 2.01 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.24 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.16 4.38 7.73 -2.91 -0.02 4.36 16 37 H 0.40 15.43 6.22 -92.71 -0.58 14.85 16 38 H 0.02 0.97 8.09 -2.39 -0.02 0.95 16 39 H 0.08 4.47 5.89 -2.39 -0.01 4.45 16 40 H 0.26 13.60 8.32 -92.71 -0.77 12.82 16 41 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 42 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 44 H 0.08 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.18 4.95 6.46 -2.91 -0.02 4.93 16 Total: -1.00 -64.31 379.68 3.37 -60.93 By element: Atomic # 1 Polarization: 32.66 SS G_CDS: 0.44 Total: 33.09 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 6.78 Total: 3.48 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -5.81 Total: -112.07 kcal Atomic # 8 Polarization: -28.43 SS G_CDS: -0.06 Total: -28.50 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.06 kcal Total: -64.31 3.37 -60.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431179015.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.709 kcal (2) G-P(sol) polarization free energy of solvation -64.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds