Wall clock time and date at job start Tue Mar 31 2020 15:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46978 * 2 1 4 4 H 1.09005 * 109.47082 * 304.99465 * 3 2 1 5 5 C 1.50701 * 109.46883 * 184.99902 * 3 2 1 6 6 H 1.08002 * 119.99871 * 239.99780 * 5 3 2 7 7 C 1.37882 * 120.00436 * 59.99852 * 5 3 2 8 8 N 1.31516 * 119.99564 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00228 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47091 * 89.99557 * 9 7 5 11 11 H 1.48494 * 109.47205 * 210.00068 * 9 7 5 12 12 H 1.48507 * 109.47035 * 329.99574 * 9 7 5 13 13 N 1.46494 * 109.47454 * 64.99837 * 3 2 1 14 14 C 1.34775 * 120.00115 * 274.99971 * 13 3 2 15 15 O 1.21286 * 119.99982 * 0.02562 * 14 13 3 16 16 C 1.50695 * 120.00336 * 179.97438 * 14 13 3 17 17 C 1.50706 * 109.47134 * 179.97438 * 16 14 13 18 18 N 1.30612 * 126.27777 * 89.98173 * 17 16 14 19 19 N 1.28540 * 110.05991 * 179.97438 * 18 17 16 20 20 C 1.31443 * 109.71832 * 359.97438 * 19 18 17 21 21 C 1.47939 * 126.50703 * 180.02562 * 20 19 18 22 22 C 1.39526 * 120.13936 * 159.94829 * 21 20 19 23 23 C 1.37965 * 119.86063 * 179.97438 * 22 21 20 24 24 C 1.38353 * 120.13869 * 0.02562 * 23 22 21 25 25 C 1.38349 * 120.28307 * 359.97438 * 24 23 22 26 26 C 1.37974 * 120.13641 * 0.02562 * 25 24 23 27 27 N 1.36079 * 126.28089 * 270.28867 * 17 16 14 28 28 C 1.46499 * 127.10167 * 0.02562 * 27 17 16 29 29 H 1.09005 * 109.47221 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47542 * 300.00603 * 1 2 3 31 31 H 1.09002 * 109.47018 * 60.00481 * 1 2 3 32 32 H 1.09000 * 109.47542 * 239.99397 * 2 1 3 33 33 H 1.09002 * 109.47018 * 119.99519 * 2 1 3 34 34 H 0.96994 * 119.99670 * 180.02562 * 8 7 5 35 35 H 0.96996 * 120.00270 * 94.99946 * 13 3 2 36 36 H 1.09005 * 109.47194 * 60.00221 * 16 14 13 37 37 H 1.08996 * 109.47632 * 300.00235 * 16 14 13 38 38 H 1.08006 * 120.06641 * 359.70402 * 22 21 20 39 39 H 1.08001 * 119.93235 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.85804 * 179.97438 * 24 23 22 41 41 H 1.07990 * 119.92624 * 180.02562 * 25 24 23 42 42 H 1.08002 * 120.06927 * 180.02562 * 26 25 24 43 43 H 1.08994 * 109.47443 * 263.79791 * 28 27 17 44 44 H 1.09005 * 109.46911 * 23.79996 * 28 27 17 45 45 H 1.09004 * 109.47282 * 143.79719 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1434 0.8783 -1.2279 8 7 3.4063 0.3365 -2.1728 9 14 6.0051 0.8799 -1.3810 10 1 6.5539 -0.3520 -0.7595 11 1 6.3837 0.9213 -2.8162 12 1 6.5576 2.0720 -0.6888 13 7 1.6524 2.0975 1.2517 14 6 0.4351 2.6645 1.3668 15 8 -0.3397 2.6319 0.4343 16 6 0.0362 3.3378 2.6546 17 6 -1.3613 3.8864 2.5227 18 7 -2.4690 3.2567 2.8099 19 7 -3.4801 4.0168 2.5814 20 6 -3.0672 5.1814 2.1332 21 6 -3.9182 6.3307 1.7544 22 6 -3.3760 7.6150 1.6969 23 6 -4.1748 8.6826 1.3424 24 6 -5.5109 8.4818 1.0448 25 6 -6.0546 7.2108 1.1000 26 6 -5.2663 6.1349 1.4531 27 7 -1.7008 5.1265 2.0771 28 6 -0.7913 6.1857 1.6333 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8294 -0.0620 -2.9493 35 1 2.2718 2.1233 1.9977 36 1 0.7275 4.1531 2.8677 37 1 0.0672 2.6132 3.4683 38 1 -2.3342 7.7736 1.9337 39 1 -3.7564 9.6773 1.2980 40 1 -6.1321 9.3208 0.7683 41 1 -7.0981 7.0606 0.8661 42 1 -5.6918 5.1431 1.4954 43 1 -0.6021 6.8718 2.4588 44 1 0.1495 5.7432 1.3058 45 1 -1.2445 6.7303 0.8049 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520835990.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:54 Heat of formation + Delta-G solvation = 40.864519 kcal Electronic energy + Delta-G solvation = -27411.407473 eV Core-core repulsion = 23622.211950 eV Total energy + Delta-G solvation = -3789.195523 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.07203 -40.68850 -39.94034 -37.01664 -36.18649 -34.38993 -34.13285 -32.93403 -31.96525 -31.65390 -29.39395 -28.76494 -28.19223 -25.04697 -24.60151 -23.65364 -22.72535 -21.89027 -21.57304 -21.06472 -19.03411 -18.35482 -17.82266 -17.60376 -17.22138 -16.91942 -16.79003 -16.28353 -16.17464 -15.75617 -15.18004 -14.85606 -14.66763 -14.60219 -14.38147 -14.34631 -14.14765 -13.86804 -13.60615 -13.54836 -13.17540 -13.03386 -12.88349 -12.68716 -12.65517 -12.28991 -12.17697 -12.06713 -12.03741 -11.60706 -11.43432 -11.21300 -11.07264 -11.00627 -10.64122 -10.50543 -9.94497 -9.65042 -9.38469 -8.14872 -6.32343 -0.19304 0.41280 0.89453 1.41170 1.46664 1.46920 1.57110 1.76131 1.79246 2.37466 2.66042 2.84553 3.05735 3.15129 3.25812 3.59934 3.77491 3.99408 4.00662 4.06507 4.21624 4.22848 4.25868 4.42408 4.46624 4.49441 4.51506 4.54532 4.67915 4.74905 4.77048 4.90310 5.00610 5.05694 5.08054 5.24023 5.41867 5.43620 5.47998 5.53448 5.55151 5.62639 5.78345 5.80733 5.92628 5.97208 6.16689 6.76525 6.96318 7.34983 7.57764 7.60067 8.90528 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.002556 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.395427 B =10952.538124 C =11371.208461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.121 4.121 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.543 4.543 6 H 0.078 0.922 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.970 3.030 10 H -0.274 1.274 11 H -0.291 1.291 12 H -0.260 1.260 13 N -0.698 5.698 14 C 0.503 3.497 15 O -0.585 6.585 16 C -0.049 4.049 17 C 0.207 3.793 18 N -0.326 5.326 19 N -0.324 5.324 20 C 0.213 3.787 21 C -0.041 4.041 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.103 4.103 25 C -0.120 4.120 26 C -0.098 4.098 27 N -0.465 5.465 28 C 0.055 3.945 29 H 0.040 0.960 30 H 0.042 0.958 31 H 0.019 0.981 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.409 0.591 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.116 0.884 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 20.000 10.686 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C 0.178 3.822 4 H 0.015 0.985 5 C -0.581 4.581 6 H 0.096 0.904 7 C -0.187 4.187 8 N -0.556 5.556 9 Si 0.795 3.205 10 H -0.199 1.199 11 H -0.217 1.217 12 H -0.184 1.184 13 N -0.348 5.348 14 C 0.288 3.712 15 O -0.465 6.465 16 C -0.090 4.090 17 C -0.061 4.061 18 N -0.166 5.166 19 N -0.164 5.164 20 C -0.052 4.052 21 C -0.044 4.044 22 C -0.133 4.133 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.138 4.138 26 C -0.118 4.118 27 N -0.154 5.154 28 C -0.086 4.086 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.173 0.827 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.179 0.821 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.134 0.866 43 H 0.142 0.858 44 H 0.116 0.884 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.750 18.762 10.302 23.952 hybrid contribution 1.771 0.088 -0.740 1.921 sum -8.979 18.849 9.562 22.964 Atomic orbital electron populations 1.21655 0.97475 0.98812 0.99915 1.21805 0.93123 0.99700 1.01373 1.18324 0.93691 0.88820 0.81373 0.98477 1.21583 0.91200 1.38739 1.06601 0.90415 1.25795 1.03249 0.94484 0.95128 1.70066 1.37105 1.38469 1.09990 0.85373 0.79185 0.78955 0.76990 1.19939 1.21659 1.18425 1.46142 1.15171 1.55716 1.17765 1.20698 0.81965 0.79136 0.89369 1.90732 1.52254 1.61016 1.42538 1.20225 0.87665 1.03629 0.97520 1.24396 0.98176 0.83415 1.00140 1.74037 0.95443 1.25134 1.21952 1.74351 1.23034 1.00513 1.18524 1.23273 0.81731 0.96833 1.03405 1.17695 0.92788 0.89414 1.04501 1.21647 1.01566 0.90653 0.99443 1.21476 0.93950 0.99549 0.98287 1.21763 0.95821 0.97547 0.97011 1.21413 1.00943 0.92242 0.99201 1.21285 0.92303 1.00382 0.97866 1.46383 1.07060 1.14044 1.47933 1.22718 0.93436 0.89177 1.03233 0.94058 0.93941 0.96144 0.91138 0.93784 0.92739 0.75546 0.82665 0.83342 0.83641 0.82100 0.82417 0.83259 0.86590 0.85806 0.88413 0.87902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.75 8.51 71.98 0.61 -5.14 16 2 C -0.12 -5.98 5.45 30.59 0.17 -5.81 16 3 C 0.28 13.89 2.24 44.25 0.10 13.99 16 4 H 0.00 -0.16 7.58 -2.38 -0.02 -0.18 16 5 C -0.54 -27.33 8.73 25.60 0.22 -27.11 16 6 H 0.08 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.01 0.70 5.29 84.66 0.45 1.15 16 8 N -0.92 -51.99 11.29 21.45 0.24 -51.75 16 9 Si 0.97 40.75 29.54 68.60 2.03 42.78 16 10 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 11 H -0.29 -12.36 7.11 99.48 0.71 -11.66 16 12 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 13 N -0.70 -26.25 5.02 -446.10 -2.24 -28.49 16 14 C 0.50 18.45 6.39 87.66 0.56 19.01 16 15 O -0.58 -27.72 13.17 -3.05 -0.04 -27.76 16 16 C -0.05 -1.22 5.84 29.10 0.17 -1.05 16 17 C 0.21 6.62 6.54 137.76 0.90 7.52 16 18 N -0.33 -12.79 12.19 -49.77 -0.61 -13.40 16 19 N -0.32 -12.45 12.06 -51.06 -0.62 -13.06 16 20 C 0.21 6.64 7.67 136.42 1.05 7.68 16 21 C -0.04 -1.01 5.86 -20.09 -0.12 -1.12 16 22 C -0.11 -1.85 8.69 22.52 0.20 -1.66 16 23 C -0.11 -1.33 10.03 22.23 0.22 -1.11 16 24 C -0.10 -1.19 10.04 22.32 0.22 -0.96 16 25 C -0.12 -1.89 10.03 22.23 0.22 -1.66 16 26 C -0.10 -2.26 9.70 22.52 0.22 -2.05 16 27 N -0.46 -12.73 3.20 -528.03 -1.69 -14.42 16 28 C 0.06 0.90 9.18 127.77 1.17 2.07 16 29 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 30 H 0.04 1.97 5.64 -2.39 -0.01 1.96 16 31 H 0.02 1.03 7.85 -2.39 -0.02 1.01 16 32 H 0.07 3.92 5.95 -2.39 -0.01 3.90 16 33 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 35 H 0.41 12.18 8.54 -92.71 -0.79 11.38 16 36 H 0.16 2.36 7.74 -2.38 -0.02 2.34 16 37 H 0.15 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.15 1.68 5.10 -2.91 -0.01 1.66 16 39 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 40 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.15 1.62 8.06 -2.92 -0.02 1.60 16 42 H 0.12 3.01 7.99 -2.91 -0.02 2.98 16 43 H 0.12 1.01 7.69 -2.39 -0.02 0.99 16 44 H 0.10 1.61 7.55 -2.38 -0.02 1.59 16 45 H 0.10 1.50 6.69 -2.38 -0.02 1.49 16 Total: -1.00 -81.64 370.97 3.68 -77.96 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.23 Total: 24.40 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 6.37 Total: 3.74 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -4.91 Total: -121.12 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.04 Total: -27.76 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -81.64 3.68 -77.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520835990.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.827 kcal (2) G-P(sol) polarization free energy of solvation -81.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds