Wall clock time and date at job start Tue Mar 31 2020 15:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47207 * 2 1 4 4 H 1.09002 * 109.47051 * 54.99650 * 3 2 1 5 5 C 1.52999 * 109.47067 * 295.00107 * 3 2 1 6 6 N 1.46496 * 109.46991 * 175.00146 * 3 2 1 7 7 N 1.28463 * 124.88593 * 59.69966 * 6 3 2 8 8 C 1.31829 * 110.07333 * 179.81998 * 7 6 3 9 9 C 1.47669 * 126.52089 * 180.13931 * 8 7 6 10 10 O 1.21574 * 120.00025 * 180.34436 * 9 8 7 11 11 N 1.34777 * 120.00172 * 0.34114 * 9 8 7 12 12 C 1.39387 * 120.00163 * 175.14603 * 11 9 8 13 13 C 1.38622 * 119.58249 * 184.96568 * 12 11 9 14 14 C 1.40800 * 118.79148 * 179.76112 * 13 12 11 15 15 C 1.41542 * 120.99386 * 180.28014 * 14 13 12 16 16 H 1.08003 * 119.99870 * 203.83699 * 15 14 13 17 17 C 1.40033 * 120.00077 * 23.83706 * 15 14 13 18 18 N 1.30737 * 119.99918 * 16.91128 * 17 15 14 19 19 Si 1.86799 * 119.99858 * 196.91175 * 17 15 14 20 20 H 1.48496 * 109.47358 * 59.99907 * 19 17 15 21 21 H 1.48498 * 109.47224 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47362 * 300.00114 * 19 17 15 23 23 C 1.41178 * 118.00744 * 0.49832 * 14 13 12 24 24 C 1.37585 * 119.02366 * 359.76120 * 23 14 13 25 25 N 1.32081 * 121.11171 * 359.97420 * 24 23 14 26 26 C 1.41516 * 106.95698 * 0.42693 * 8 7 6 27 27 C 1.35041 * 124.88103 * 239.99519 * 6 3 2 28 28 C 1.50697 * 126.38395 * 359.97438 * 27 6 3 29 29 H 1.09000 * 109.46968 * 300.00450 * 1 2 3 30 30 H 1.09006 * 109.47046 * 59.99522 * 1 2 3 31 31 H 1.08991 * 109.46859 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47146 * 240.00444 * 2 1 3 33 33 H 1.08997 * 109.47299 * 119.99722 * 2 1 3 34 34 H 1.08999 * 109.47258 * 300.00301 * 5 3 2 35 35 H 1.09003 * 109.47166 * 60.00112 * 5 3 2 36 36 H 1.08999 * 109.47363 * 180.02562 * 5 3 2 37 37 H 0.96999 * 119.99912 * 355.14942 * 11 9 8 38 38 H 1.07999 * 120.60337 * 359.97438 * 13 12 11 39 39 H 0.97000 * 119.99702 * 179.97438 * 18 17 15 40 40 H 1.08005 * 120.48578 * 179.78317 * 23 14 13 41 41 H 1.07999 * 119.44509 * 180.02562 * 24 23 14 42 42 H 1.08000 * 127.25068 * 179.78149 * 26 8 7 43 43 H 1.09004 * 109.46860 * 89.99758 * 28 27 6 44 44 H 1.09003 * 109.47358 * 209.99839 * 28 27 6 45 45 H 1.08999 * 109.47431 * 329.99733 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1266 -1.3073 6 7 3.5001 1.4442 0.1203 7 7 4.3064 0.8872 -0.7102 8 6 5.5530 1.0704 -0.3226 9 6 6.7672 0.5869 -1.0102 10 8 7.8646 0.8198 -0.5417 11 7 6.6588 -0.1127 -2.1570 12 6 7.8048 -0.4819 -2.8592 13 6 7.6815 -1.1101 -4.0887 14 6 8.8501 -1.4712 -4.7861 15 6 8.7784 -2.1093 -6.0474 16 1 9.6032 -2.7142 -6.3942 17 6 7.6382 -1.9563 -6.8457 18 7 6.7947 -0.9877 -6.6019 19 14 7.3222 -3.1363 -8.2589 20 1 7.2085 -4.5202 -7.7324 21 1 6.0585 -2.7622 -8.9431 22 1 8.4483 -3.0652 -9.2245 23 6 10.0955 -1.1819 -4.1873 24 6 10.1178 -0.5601 -2.9602 25 7 8.9982 -0.2326 -2.3406 26 6 5.5061 1.8129 0.8812 27 6 4.1916 2.0268 1.1234 28 6 3.6086 2.7759 2.2938 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.0698 1.5875 -2.1492 35 1 0.5489 2.1253 -1.3969 36 1 1.9990 3.1541 -1.3076 37 1 5.7832 -0.3593 -2.4938 38 1 6.7067 -1.3158 -4.5057 39 1 6.0050 -0.8815 -7.1551 40 1 11.0171 -1.4445 -4.6854 41 1 11.0667 -0.3352 -2.4961 42 1 6.3429 2.1404 1.4803 43 1 3.4243 2.0820 3.1139 44 1 4.3097 3.5447 2.6188 45 1 2.6701 3.2430 1.9952 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537567834.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:02 Heat of formation + Delta-G solvation = 48.644033 kcal Electronic energy + Delta-G solvation = -27197.523521 eV Core-core repulsion = 23408.665343 eV Total energy + Delta-G solvation = -3788.858178 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.78342 -41.14878 -39.46797 -37.43570 -36.17241 -35.54646 -33.74445 -32.74997 -32.45457 -30.64739 -29.87158 -27.97284 -27.87973 -26.41485 -24.84229 -23.86635 -22.90784 -22.10176 -21.61049 -20.32019 -19.48278 -18.48921 -17.77507 -17.32116 -17.15046 -16.95915 -16.13142 -16.09531 -15.99586 -15.83532 -15.33717 -15.05471 -14.72304 -14.60027 -14.36336 -14.17671 -14.04226 -13.86802 -13.57330 -13.28635 -13.20994 -13.09836 -12.93535 -12.75124 -12.65794 -12.56587 -12.12289 -12.02182 -11.96353 -11.83941 -11.64009 -11.55596 -11.30563 -11.16393 -10.12658 -9.98147 -9.90087 -9.66302 -8.90280 -8.66478 -6.58252 0.34795 0.91301 0.99093 1.17378 1.39766 1.44258 1.51833 1.59435 2.08967 2.19010 2.39048 2.80935 3.19622 3.60026 3.69886 3.72900 3.74774 3.92963 3.97969 4.18700 4.34721 4.39733 4.47228 4.57978 4.61217 4.70614 4.76138 4.78331 4.79578 4.87308 4.90787 5.00510 5.03953 5.05027 5.08886 5.09475 5.19764 5.24991 5.34137 5.40895 5.46126 5.59821 5.87130 5.92623 6.09314 6.39557 6.52812 6.76722 6.80386 6.89392 7.20426 7.79019 8.24725 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012382 B = 0.003171 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.853942 B = 8829.209631 C =10746.768598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.137 3.863 4 H 0.146 0.854 5 C -0.163 4.163 6 N -0.267 5.267 7 N -0.270 5.270 8 C -0.041 4.041 9 C 0.586 3.414 10 O -0.514 6.514 11 N -0.642 5.642 12 C 0.333 3.667 13 C -0.260 4.260 14 C 0.115 3.885 15 C -0.483 4.483 16 H 0.088 0.912 17 C 0.038 3.962 18 N -0.812 5.812 19 Si 0.990 3.010 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.257 1.257 23 C -0.297 4.297 24 C 0.115 3.885 25 N -0.581 5.581 26 C -0.203 4.203 27 C 0.023 3.977 28 C -0.081 4.081 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.420 0.580 38 H 0.121 0.879 39 H 0.292 0.708 40 H 0.120 0.880 41 H 0.154 0.846 42 H 0.161 0.839 43 H 0.096 0.904 44 H 0.096 0.904 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.176 5.657 12.678 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.169 4.169 3 C 0.039 3.961 4 H 0.164 0.836 5 C -0.220 4.220 6 N -0.057 5.057 7 N -0.107 5.107 8 C -0.199 4.199 9 C 0.372 3.628 10 O -0.385 6.385 11 N -0.288 5.288 12 C 0.108 3.892 13 C -0.285 4.285 14 C 0.107 3.893 15 C -0.513 4.513 16 H 0.106 0.894 17 C -0.179 4.179 18 N -0.437 5.437 19 Si 0.810 3.190 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.181 1.181 23 C -0.321 4.321 24 C -0.039 4.039 25 N -0.302 5.302 26 C -0.231 4.231 27 C -0.101 4.101 28 C -0.139 4.139 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.257 0.743 38 H 0.139 0.861 39 H 0.103 0.897 40 H 0.138 0.862 41 H 0.171 0.829 42 H 0.178 0.822 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.364 5.931 12.960 24.044 hybrid contribution 0.490 -0.699 -1.300 1.555 sum -18.875 5.232 11.661 22.795 Atomic orbital electron populations 1.21776 0.91785 1.03135 1.03558 1.21847 0.98654 0.93840 1.02587 1.22178 0.71529 0.99721 1.02700 0.83633 1.22212 1.04260 1.00317 0.95258 1.46134 1.08190 1.36077 1.15275 1.73418 1.00058 1.18338 1.18878 1.21663 0.90560 1.08100 0.99625 1.17537 0.87489 0.77786 0.79982 1.90812 1.27516 1.55710 1.64475 1.43276 1.08210 1.53950 1.23374 1.18403 0.86433 0.94944 0.89458 1.21494 1.00456 1.11997 0.94585 1.17990 0.90785 0.87794 0.92708 1.19871 1.03156 1.27609 1.00698 0.89404 1.26900 0.93945 0.95666 1.01431 1.69830 1.10755 1.25763 1.37314 0.85134 0.78802 0.78469 0.76615 1.18349 1.19004 1.18119 1.22090 0.97957 1.11970 1.00094 1.22267 0.95351 0.94228 0.92050 1.67346 0.97235 1.28485 1.37096 1.21679 0.97552 1.05857 0.98048 1.22008 0.90848 1.02051 0.95229 1.20560 1.02239 0.99469 0.91583 0.90378 0.91173 0.91923 0.92568 0.91882 0.93243 0.87035 0.92098 0.74266 0.86138 0.89661 0.86185 0.82888 0.82169 0.88582 0.88550 0.88661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.67 71.98 0.70 -0.47 16 2 C -0.13 -1.88 5.57 30.60 0.17 -1.71 16 3 C 0.14 1.93 3.02 44.99 0.14 2.07 16 4 H 0.15 0.94 6.55 -2.39 -0.02 0.92 16 5 C -0.16 -2.28 9.13 71.98 0.66 -1.62 16 6 N -0.27 -6.21 3.04 -314.19 -0.96 -7.16 16 7 N -0.27 -8.68 11.33 -48.19 -0.55 -9.23 16 8 C -0.04 -1.54 7.13 42.45 0.30 -1.24 16 9 C 0.59 27.21 7.78 86.73 0.68 27.89 16 10 O -0.51 -27.20 15.18 -3.95 -0.06 -27.26 16 11 N -0.64 -30.40 5.38 -311.41 -1.68 -32.08 16 12 C 0.33 18.06 7.41 132.78 0.98 19.05 16 13 C -0.26 -14.41 8.62 22.99 0.20 -14.21 16 14 C 0.12 6.46 5.60 -21.12 -0.12 6.34 16 15 C -0.48 -25.77 9.12 23.52 0.21 -25.56 16 16 H 0.09 4.43 7.90 -2.91 -0.02 4.40 16 17 C 0.04 1.87 5.20 85.29 0.44 2.32 16 18 N -0.81 -41.57 10.93 21.84 0.24 -41.33 16 19 Si 0.99 36.84 29.59 68.60 2.03 38.87 16 20 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 21 H -0.27 -9.30 7.11 99.48 0.71 -8.59 16 22 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 23 C -0.30 -15.40 9.90 22.84 0.23 -15.18 16 24 C 0.11 5.85 11.15 84.50 0.94 6.79 16 25 N -0.58 -32.39 7.85 -193.57 -1.52 -33.91 16 26 C -0.20 -6.18 10.73 22.41 0.24 -5.94 16 27 C 0.02 0.51 6.92 41.40 0.29 0.80 16 28 C -0.08 -0.81 9.92 71.23 0.71 -0.10 16 29 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.48 6.57 -2.38 -0.02 0.46 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.11 0.86 6.57 -2.39 -0.02 0.84 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.42 17.88 8.43 -92.71 -0.78 17.10 16 38 H 0.12 6.69 6.20 -2.91 -0.02 6.67 16 39 H 0.29 13.43 8.29 -92.71 -0.77 12.66 16 40 H 0.12 5.60 8.06 -2.91 -0.02 5.57 16 41 H 0.15 6.66 8.06 -2.91 -0.02 6.64 16 42 H 0.16 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.09 0.47 7.03 -2.39 -0.02 0.45 16 Total: -1.00 -76.70 378.33 4.51 -72.18 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: 0.24 Total: 40.69 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 6.76 Total: -0.79 kcal Atomic # 7 Polarization: -119.25 SS G_CDS: -4.46 Total: -123.71 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.06 Total: -27.26 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Total: -76.70 4.51 -72.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537567834.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.829 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds