Wall clock time and date at job start Tue Mar 31 2020 15:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50696 * 109.46917 * 185.40158 * 3 2 1 6 6 H 1.08001 * 119.99977 * 244.73067 * 5 3 2 7 7 C 1.37876 * 119.99956 * 64.73620 * 5 3 2 8 8 N 1.31513 * 119.99963 * 187.25454 * 7 5 3 9 9 Si 1.86799 * 119.99994 * 7.25989 * 7 5 3 10 10 H 1.48495 * 109.46971 * 269.99666 * 9 7 5 11 11 H 1.48501 * 109.47411 * 29.99983 * 9 7 5 12 12 H 1.48504 * 109.47244 * 150.00104 * 9 7 5 13 13 N 1.46504 * 109.47187 * 65.40277 * 3 2 1 14 14 C 1.34778 * 119.99680 * 275.00165 * 13 3 2 15 15 O 1.21832 * 120.00305 * 359.97438 * 14 13 3 16 16 N 1.33828 * 119.99459 * 180.02562 * 14 13 3 17 17 C 1.32945 * 120.00119 * 180.02562 * 16 14 13 18 18 C 1.41213 * 126.36319 * 359.67999 * 17 16 14 19 19 C 1.34986 * 108.24268 * 179.82629 * 18 17 16 20 20 N 1.36552 * 108.92994 * 0.44713 * 19 18 17 21 21 C 1.39747 * 125.85780 * 179.69113 * 20 19 18 22 22 C 1.38921 * 120.07292 * 179.76040 * 21 20 19 23 23 C 1.38099 * 119.91648 * 179.71693 * 22 21 20 24 24 C 1.38289 * 120.07886 * 0.57971 * 23 22 21 25 25 C 1.50706 * 119.92477 * 179.72003 * 24 23 22 26 26 C 1.38292 * 120.15207 * 359.69107 * 24 23 22 27 27 C 1.38092 * 120.07238 * 0.02562 * 26 24 23 28 28 N 1.37433 * 126.37370 * 179.97438 * 17 16 14 29 29 H 0.97000 * 126.35627 * 359.97438 * 28 17 16 30 30 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 31 31 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 33 33 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 34 34 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 35 35 H 0.97003 * 120.00333 * 354.94855 * 8 7 5 36 36 H 0.96998 * 119.99835 * 94.99759 * 13 3 2 37 37 H 1.07994 * 125.87906 * 359.97438 * 18 17 16 38 38 H 1.07994 * 125.53272 * 180.19386 * 19 18 17 39 39 H 1.08000 * 120.04214 * 0.02562 * 22 21 20 40 40 H 1.08005 * 119.95900 * 180.31324 * 23 22 21 41 41 H 1.09003 * 109.46734 * 269.97312 * 25 24 23 42 42 H 1.09000 * 109.46837 * 29.97337 * 25 24 23 43 43 H 1.08999 * 109.47183 * 149.97698 * 25 24 23 44 44 H 1.07995 * 119.96503 * 180.02562 * 26 24 23 45 45 H 1.08002 * 120.04124 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1337 6 1 4.1545 1.8178 0.6729 7 6 4.1311 0.9700 -1.2860 8 7 5.4381 0.8380 -1.3491 9 14 3.0742 0.5147 -2.7574 10 1 2.6852 -0.9154 -2.6638 11 1 1.8533 1.3599 -2.7704 12 1 3.8439 0.7374 -4.0077 13 7 1.6608 2.0945 1.2559 14 6 0.4442 2.6611 1.3804 15 8 -0.3399 2.6315 0.4484 16 7 0.0980 3.2572 2.5275 17 6 -1.1021 3.8157 2.6506 18 6 -2.1087 3.8639 1.6613 19 6 -3.1757 4.5115 2.1752 20 7 -2.8893 4.8907 3.4554 21 6 -3.7434 5.5899 4.3125 22 6 -3.3286 5.9110 5.5989 23 6 -4.1730 6.6071 6.4412 24 6 -5.4345 6.9740 6.0096 25 6 -6.3555 7.7282 6.9339 26 6 -5.8527 6.6511 4.7316 27 6 -5.0113 5.9602 3.8821 28 7 -1.5919 4.4584 3.7623 29 1 -1.1261 4.5885 4.6031 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9925 1.1426 -0.6137 36 1 2.2852 2.1184 1.9978 37 1 -2.0379 3.4513 0.6658 38 1 -4.1035 4.7026 1.6566 39 1 -2.3452 5.6209 5.9381 40 1 -3.8493 6.8615 7.4397 41 1 -6.9560 7.0204 7.5054 42 1 -5.7647 8.3382 7.6172 43 1 -7.0119 8.3712 6.3476 44 1 -6.8384 6.9395 4.3976 45 1 -5.3382 5.7086 2.8840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594153093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:18 Heat of formation + Delta-G solvation = 108.996619 kcal Electronic energy + Delta-G solvation = -26783.677287 eV Core-core repulsion = 22997.436193 eV Total energy + Delta-G solvation = -3786.241094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.91797 -39.75201 -38.88752 -35.69667 -34.52079 -32.84800 -32.26773 -32.18080 -31.22663 -31.17338 -29.91460 -27.13484 -26.25473 -23.76317 -23.09785 -22.16647 -21.76064 -21.54415 -20.36283 -19.44839 -18.83294 -17.58154 -16.47987 -16.21059 -16.00446 -15.90838 -15.51232 -15.30659 -14.86021 -14.67957 -14.30455 -14.11238 -14.01897 -13.70259 -13.35143 -13.08386 -12.88811 -12.75106 -12.46330 -12.31865 -12.14911 -12.05322 -11.68758 -11.61238 -11.05823 -10.78636 -10.54363 -10.32770 -9.89509 -9.88436 -9.65973 -9.61741 -9.51432 -9.07636 -8.75786 -8.52254 -8.36917 -7.85525 -7.25688 -6.42782 -4.08548 0.35406 0.74650 1.05074 1.40914 2.65055 3.17191 3.28064 3.45396 3.54676 3.69929 4.11266 4.17357 4.30875 4.39178 4.45581 4.52614 4.62149 4.63424 4.75054 4.93924 5.04074 5.09980 5.20929 5.31327 5.32857 5.42077 5.47569 5.67333 5.70719 5.84283 6.02564 6.08945 6.20970 6.22780 6.32409 6.39837 6.65674 6.85349 6.90183 6.94406 7.10771 7.21117 7.28682 7.54888 7.75881 7.86118 8.03851 8.37997 8.88873 8.90939 9.58402 9.72423 10.97575 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.002137 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.304294 B =13097.764057 C =13464.125376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 C 0.253 3.747 4 H 0.047 0.953 5 C -0.604 4.604 6 H 0.061 0.939 7 C 0.033 3.967 8 N -0.909 5.909 9 Si 1.050 2.950 10 H -0.281 1.281 11 H -0.272 1.272 12 H -0.289 1.289 13 N -0.687 5.687 14 C 0.674 3.326 15 O -0.619 6.619 16 N -0.659 5.659 17 C 0.491 3.509 18 C -0.256 4.256 19 C 0.115 3.885 20 N -0.335 5.335 21 C 0.179 3.821 22 C -0.158 4.158 23 C -0.078 4.078 24 C -0.114 4.114 25 C -0.112 4.112 26 C -0.077 4.077 27 C -0.149 4.149 28 N -0.493 5.493 29 H 0.447 0.553 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.267 0.733 36 H 0.394 0.606 37 H 0.201 0.799 38 H 0.193 0.807 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.133 0.867 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.864 13.711 16.603 34.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C 0.149 3.851 4 H 0.065 0.935 5 C -0.643 4.643 6 H 0.080 0.920 7 C -0.172 4.172 8 N -0.543 5.543 9 Si 0.879 3.121 10 H -0.208 1.208 11 H -0.198 1.198 12 H -0.216 1.216 13 N -0.335 5.335 14 C 0.373 3.627 15 O -0.502 6.502 16 N -0.413 5.413 17 C 0.228 3.772 18 C -0.286 4.286 19 C -0.014 4.014 20 N -0.118 5.118 21 C 0.084 3.916 22 C -0.180 4.180 23 C -0.097 4.097 24 C -0.115 4.115 25 C -0.169 4.169 26 C -0.096 4.096 27 C -0.171 4.171 28 N -0.224 5.224 29 H 0.295 0.705 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.226 0.774 37 H 0.217 0.783 38 H 0.210 0.790 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.151 0.849 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -26.588 12.958 14.976 33.153 hybrid contribution 0.280 0.615 1.944 2.058 sum -26.308 13.573 16.919 34.097 Atomic orbital electron populations 1.21857 0.97165 0.98500 1.02269 1.22252 0.94104 1.00107 1.01037 1.19135 0.95478 0.88209 0.82279 0.93507 1.22219 0.89948 1.47472 1.04623 0.92043 1.25702 0.97524 0.93736 1.00217 1.70830 1.04397 1.43002 1.36063 0.83933 0.75352 0.77134 0.75663 1.20785 1.19799 1.21567 1.45214 1.13553 1.56837 1.17893 1.16648 0.83498 0.79191 0.83327 1.90691 1.51225 1.64811 1.43431 1.68239 1.15370 1.27727 1.29989 1.18781 0.90124 0.84904 0.83372 1.23053 0.92598 1.08700 1.04211 1.22740 1.00923 0.95802 0.81947 1.43255 1.04307 1.52025 1.12256 1.17600 0.89325 0.94953 0.89724 1.20648 1.01270 1.03620 0.92419 1.20859 0.92972 0.96505 0.99330 1.19943 0.95438 1.00741 0.95406 1.20766 0.98394 0.99371 0.98378 1.20866 0.99242 0.96717 0.92785 1.20671 0.91812 1.03088 1.01493 1.43989 1.04545 1.57603 1.16291 0.70476 0.92921 0.95404 0.93028 0.92461 0.92911 0.92264 0.77356 0.78282 0.78999 0.85787 0.85147 0.91100 0.91463 0.91401 0.84890 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.52 37.16 0.32 -2.75 16 2 C -0.14 -3.29 5.20 -26.73 -0.14 -3.43 16 3 C 0.25 6.62 1.81 -69.08 -0.13 6.50 16 4 H 0.05 1.33 6.07 -51.93 -0.32 1.01 16 5 C -0.60 -17.53 9.09 -34.44 -0.31 -17.84 16 6 H 0.06 1.87 7.95 -52.49 -0.42 1.46 16 7 C 0.03 0.99 5.42 -17.82 -0.10 0.89 16 8 N -0.91 -28.37 13.70 55.43 0.76 -27.61 16 9 Si 1.05 26.67 25.39 -169.99 -4.32 22.35 16 10 H -0.28 -6.75 6.73 56.52 0.38 -6.37 16 11 H -0.27 -6.71 6.38 56.52 0.36 -6.35 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 N -0.69 -16.37 5.03 -60.01 -0.30 -16.67 16 14 C 0.67 15.33 7.05 -87.76 -0.62 14.71 16 15 O -0.62 -14.61 10.40 5.07 0.05 -14.56 16 16 N -0.66 -12.92 10.59 -15.78 -0.17 -13.08 16 17 C 0.49 7.82 8.07 -155.27 -1.25 6.57 16 18 C -0.26 -3.66 9.52 -39.61 -0.38 -4.04 16 19 C 0.12 1.11 10.75 -16.61 -0.18 0.93 16 20 N -0.33 -3.25 3.82 -10.53 -0.04 -3.29 16 21 C 0.18 1.41 6.68 -83.74 -0.56 0.85 16 22 C -0.16 -1.11 9.66 -39.38 -0.38 -1.49 16 23 C -0.08 -0.45 9.69 -39.61 -0.38 -0.83 16 24 C -0.11 -0.60 5.88 -104.58 -0.62 -1.22 16 25 C -0.11 -0.36 10.01 36.01 0.36 0.00 16 26 C -0.08 -0.40 9.69 -39.62 -0.38 -0.78 16 27 C -0.15 -0.90 9.45 -39.38 -0.37 -1.28 16 28 N -0.49 -5.67 7.02 31.34 0.22 -5.45 16 29 H 0.45 4.10 7.91 -182.55 -1.44 2.65 16 30 H 0.05 1.17 7.87 -51.93 -0.41 0.76 16 31 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 1.15 5.63 -51.93 -0.29 0.86 16 33 H 0.06 1.41 4.43 -51.93 -0.23 1.18 16 34 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.27 8.28 8.72 -40.82 -0.36 7.92 16 36 H 0.39 8.96 8.63 -40.82 -0.35 8.60 16 37 H 0.20 3.31 5.77 -52.49 -0.30 3.01 16 38 H 0.19 0.98 6.99 -52.49 -0.37 0.61 16 39 H 0.12 0.74 6.97 -52.49 -0.37 0.38 16 40 H 0.13 0.50 8.06 -52.48 -0.42 0.08 16 41 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 42 H 0.07 0.18 8.08 -51.93 -0.42 -0.24 16 43 H 0.07 0.17 8.08 -51.93 -0.42 -0.25 16 44 H 0.13 0.39 8.06 -52.49 -0.42 -0.03 16 45 H 0.13 0.54 6.70 -52.49 -0.35 0.19 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -36.26 363.02 -10.46 -46.72 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -7.01 Total: 9.33 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -5.12 Total: -3.21 kcal Atomic # 7 Polarization: -66.58 SS G_CDS: 0.47 Total: -66.11 kcal Atomic # 8 Polarization: -14.61 SS G_CDS: 0.05 Total: -14.56 kcal Atomic # 14 Polarization: 26.67 SS G_CDS: -4.32 Total: 22.35 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -36.26 -10.46 -46.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594153093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.715 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds