Wall clock time and date at job start Tue Mar 31 2020 15:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47143 * 2 1 4 4 H 1.09002 * 109.47088 * 305.40541 * 3 2 1 5 5 C 1.50696 * 109.46917 * 185.40158 * 3 2 1 6 6 H 1.08001 * 119.99977 * 244.73067 * 5 3 2 7 7 C 1.37876 * 119.99956 * 64.73620 * 5 3 2 8 8 N 1.31513 * 119.99963 * 187.25454 * 7 5 3 9 9 Si 1.86799 * 119.99994 * 7.25989 * 7 5 3 10 10 H 1.48495 * 109.46971 * 269.99666 * 9 7 5 11 11 H 1.48501 * 109.47411 * 29.99983 * 9 7 5 12 12 H 1.48504 * 109.47244 * 150.00104 * 9 7 5 13 13 N 1.46504 * 109.47187 * 65.40277 * 3 2 1 14 14 C 1.34778 * 119.99680 * 275.00165 * 13 3 2 15 15 O 1.21832 * 120.00305 * 359.97438 * 14 13 3 16 16 N 1.33828 * 119.99459 * 180.02562 * 14 13 3 17 17 C 1.32945 * 120.00119 * 180.02562 * 16 14 13 18 18 C 1.41213 * 126.36319 * 359.67999 * 17 16 14 19 19 C 1.34986 * 108.24268 * 179.82629 * 18 17 16 20 20 N 1.36552 * 108.92994 * 0.44713 * 19 18 17 21 21 C 1.39747 * 125.85780 * 179.69113 * 20 19 18 22 22 C 1.38921 * 120.07292 * 179.76040 * 21 20 19 23 23 C 1.38099 * 119.91648 * 179.71693 * 22 21 20 24 24 C 1.38289 * 120.07886 * 0.57971 * 23 22 21 25 25 C 1.50706 * 119.92477 * 179.72003 * 24 23 22 26 26 C 1.38292 * 120.15207 * 359.69107 * 24 23 22 27 27 C 1.38092 * 120.07238 * 0.02562 * 26 24 23 28 28 N 1.37433 * 126.37370 * 179.97438 * 17 16 14 29 29 H 0.97000 * 126.35627 * 359.97438 * 28 17 16 30 30 H 1.09005 * 109.47250 * 60.00012 * 1 2 3 31 31 H 1.08995 * 109.47287 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47492 * 300.00450 * 1 2 3 33 33 H 1.08996 * 109.46998 * 239.99585 * 2 1 3 34 34 H 1.09001 * 109.46765 * 119.99971 * 2 1 3 35 35 H 0.97003 * 120.00333 * 354.94855 * 8 7 5 36 36 H 0.96998 * 119.99835 * 94.99759 * 13 3 2 37 37 H 1.07994 * 125.87906 * 359.97438 * 18 17 16 38 38 H 1.07994 * 125.53272 * 180.19386 * 19 18 17 39 39 H 1.08000 * 120.04214 * 0.02562 * 22 21 20 40 40 H 1.08005 * 119.95900 * 180.31324 * 23 22 21 41 41 H 1.09003 * 109.46734 * 269.97312 * 25 24 23 42 42 H 1.09000 * 109.46837 * 29.97337 * 25 24 23 43 43 H 1.08999 * 109.47183 * 149.97698 * 25 24 23 44 44 H 1.07995 * 119.96503 * 180.02562 * 26 24 23 45 45 H 1.08002 * 120.04124 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1337 6 1 4.1545 1.8178 0.6729 7 6 4.1311 0.9700 -1.2860 8 7 5.4381 0.8380 -1.3491 9 14 3.0742 0.5147 -2.7574 10 1 2.6852 -0.9154 -2.6638 11 1 1.8533 1.3599 -2.7704 12 1 3.8439 0.7374 -4.0077 13 7 1.6608 2.0945 1.2559 14 6 0.4442 2.6611 1.3804 15 8 -0.3399 2.6315 0.4484 16 7 0.0980 3.2572 2.5275 17 6 -1.1021 3.8157 2.6506 18 6 -2.1087 3.8639 1.6613 19 6 -3.1757 4.5115 2.1752 20 7 -2.8893 4.8907 3.4554 21 6 -3.7434 5.5899 4.3125 22 6 -3.3286 5.9110 5.5989 23 6 -4.1730 6.6071 6.4412 24 6 -5.4345 6.9740 6.0096 25 6 -6.3555 7.7282 6.9339 26 6 -5.8527 6.6511 4.7316 27 6 -5.0113 5.9602 3.8821 28 7 -1.5919 4.4584 3.7623 29 1 -1.1261 4.5885 4.6031 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 5.9925 1.1426 -0.6137 36 1 2.2852 2.1184 1.9978 37 1 -2.0379 3.4513 0.6658 38 1 -4.1035 4.7026 1.6566 39 1 -2.3452 5.6209 5.9381 40 1 -3.8493 6.8615 7.4397 41 1 -6.9560 7.0204 7.5054 42 1 -5.7647 8.3382 7.6172 43 1 -7.0119 8.3712 6.3476 44 1 -6.8384 6.9395 4.3976 45 1 -5.3382 5.7086 2.8840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594153093.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:17 Heat of formation + Delta-G solvation = 83.234897 kcal Electronic energy + Delta-G solvation = -26784.794399 eV Core-core repulsion = 22997.436193 eV Total energy + Delta-G solvation = -3787.358206 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.87615 -40.75944 -40.03384 -37.37089 -35.62036 -34.36827 -33.86292 -33.14290 -32.83564 -31.80054 -30.80865 -29.05317 -26.94071 -24.59915 -24.28854 -23.83322 -22.69048 -22.40627 -21.70719 -21.09801 -20.16251 -19.38090 -17.77830 -17.46361 -16.98853 -16.89012 -16.48482 -16.35447 -15.98143 -15.77805 -15.39954 -15.15543 -14.74731 -14.66724 -14.49326 -14.40093 -14.34648 -14.24999 -14.01600 -13.69618 -13.24399 -13.02171 -12.69868 -12.52945 -12.45057 -12.28033 -12.01881 -12.01175 -11.65851 -11.46173 -11.28581 -10.93394 -10.82989 -10.64480 -10.06865 -10.02691 -9.92388 -9.58958 -8.79267 -8.32977 -6.45522 -0.40677 0.13617 0.29869 0.60202 1.41840 1.52050 1.52690 1.72537 2.23615 2.41969 2.68634 2.86068 3.01205 3.11346 3.52560 3.66460 3.86156 4.01795 4.02582 4.16576 4.32839 4.35688 4.39019 4.41613 4.51170 4.59163 4.67769 4.77949 4.89285 4.91034 5.01111 5.05103 5.08425 5.12156 5.21871 5.26388 5.30896 5.37455 5.56089 5.61562 5.63272 5.73357 5.84514 5.86048 5.91995 6.03610 6.30304 6.53637 6.71978 7.14942 7.31174 8.10749 8.60146 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.036246 B = 0.002137 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.304294 B =13097.764057 C =13464.125376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.133 4.133 3 C 0.262 3.738 4 H 0.024 0.976 5 C -0.606 4.606 6 H 0.032 0.968 7 C -0.012 4.012 8 N -0.934 5.934 9 Si 1.085 2.915 10 H -0.254 1.254 11 H -0.265 1.265 12 H -0.283 1.283 13 N -0.701 5.701 14 C 0.673 3.327 15 O -0.640 6.640 16 N -0.702 5.702 17 C 0.479 3.521 18 C -0.315 4.315 19 C 0.172 3.828 20 N -0.318 5.318 21 C 0.139 3.861 22 C -0.163 4.163 23 C -0.091 4.091 24 C -0.107 4.107 25 C -0.115 4.115 26 C -0.084 4.084 27 C -0.138 4.138 28 N -0.477 5.477 29 H 0.456 0.544 30 H 0.044 0.956 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.255 0.745 36 H 0.393 0.607 37 H 0.174 0.826 38 H 0.248 0.752 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.161 0.839 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.863 15.127 17.738 39.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.172 4.172 3 C 0.157 3.843 4 H 0.042 0.958 5 C -0.644 4.644 6 H 0.050 0.950 7 C -0.211 4.211 8 N -0.570 5.570 9 Si 0.907 3.093 10 H -0.179 1.179 11 H -0.190 1.190 12 H -0.209 1.209 13 N -0.350 5.350 14 C 0.372 3.628 15 O -0.524 6.524 16 N -0.461 5.461 17 C 0.220 3.780 18 C -0.345 4.345 19 C 0.038 3.962 20 N -0.100 5.100 21 C 0.047 3.953 22 C -0.183 4.183 23 C -0.109 4.109 24 C -0.108 4.108 25 C -0.171 4.171 26 C -0.102 4.102 27 C -0.159 4.159 28 N -0.206 5.206 29 H 0.307 0.693 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.226 0.774 37 H 0.191 0.809 38 H 0.264 0.736 39 H 0.144 0.856 40 H 0.164 0.836 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.178 0.822 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -31.680 14.465 16.271 38.439 hybrid contribution 1.425 0.549 1.975 2.496 sum -30.255 15.014 18.246 38.389 Atomic orbital electron populations 1.21693 0.95111 1.00130 1.01443 1.22145 0.95871 0.98316 1.00821 1.18797 0.93116 0.89522 0.82880 0.95771 1.22393 0.91703 1.46535 1.03755 0.94976 1.27007 0.97812 0.93464 1.02852 1.70936 1.05259 1.44934 1.35834 0.83509 0.74288 0.78642 0.72893 1.17908 1.19015 1.20893 1.45028 1.14614 1.58333 1.17058 1.16809 0.82747 0.79027 0.84185 1.90667 1.51507 1.65842 1.44367 1.68125 1.17817 1.31518 1.28683 1.18952 0.89764 0.84398 0.84840 1.22613 0.94509 1.13656 1.03768 1.23448 1.00844 0.90940 0.80957 1.43676 1.03193 1.50544 1.12632 1.17930 0.90078 0.97167 0.90100 1.20872 1.01730 1.03278 0.92466 1.21128 0.93249 0.96527 1.00040 1.20353 0.95285 0.99247 0.95879 1.20847 0.98332 0.99582 0.98349 1.21257 1.00294 0.96182 0.92498 1.21065 0.90577 1.01523 1.02744 1.44030 1.05414 1.55527 1.15610 0.69334 0.93658 0.92339 0.93990 0.92682 0.92973 0.93614 0.77441 0.80909 0.73586 0.85568 0.83593 0.90317 0.90934 0.90225 0.82178 0.82215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 8.52 71.98 0.61 -4.87 16 2 C -0.13 -6.47 5.20 30.59 0.16 -6.31 16 3 C 0.26 14.23 1.81 44.24 0.08 14.31 16 4 H 0.02 1.43 6.07 -2.39 -0.01 1.42 16 5 C -0.61 -36.77 9.09 25.60 0.23 -36.54 16 6 H 0.03 2.08 7.95 -2.91 -0.02 2.06 16 7 C -0.01 -0.76 5.42 84.65 0.46 -0.30 16 8 N -0.93 -60.20 13.70 21.45 0.29 -59.90 16 9 Si 1.08 54.21 25.39 68.60 1.74 55.95 16 10 H -0.25 -11.57 6.73 99.48 0.67 -10.90 16 11 H -0.27 -12.88 6.38 99.48 0.63 -12.25 16 12 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 13 N -0.70 -35.37 5.03 -461.94 -2.32 -37.69 16 14 C 0.67 32.26 7.05 179.35 1.27 33.52 16 15 O -0.64 -31.64 10.40 -4.77 -0.05 -31.69 16 16 N -0.70 -29.00 10.59 -322.54 -3.42 -32.41 16 17 C 0.48 15.59 8.07 133.94 1.08 16.67 16 18 C -0.31 -8.97 9.52 22.25 0.21 -8.76 16 19 C 0.17 2.79 10.75 83.21 0.89 3.68 16 20 N -0.32 -5.30 3.82 -187.24 -0.71 -6.02 16 21 C 0.14 1.71 6.68 38.21 0.26 1.96 16 22 C -0.16 -1.85 9.66 22.40 0.22 -1.64 16 23 C -0.09 -0.76 9.69 22.25 0.22 -0.55 16 24 C -0.11 -0.70 5.88 -19.84 -0.12 -0.82 16 25 C -0.11 -0.28 10.01 71.24 0.71 0.43 16 26 C -0.08 -0.45 9.69 22.25 0.22 -0.24 16 27 C -0.14 -1.01 9.45 22.40 0.21 -0.79 16 28 N -0.48 -10.58 7.02 -54.77 -0.38 -10.97 16 29 H 0.46 8.12 7.91 -213.28 -1.69 6.43 16 30 H 0.04 2.00 7.87 -2.38 -0.02 1.98 16 31 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 32 H 0.04 1.90 5.63 -2.39 -0.01 1.88 16 33 H 0.05 2.68 4.43 -2.39 -0.01 2.66 16 34 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.25 16.55 8.72 -92.71 -0.81 15.75 16 36 H 0.39 19.23 8.63 -92.71 -0.80 18.43 16 37 H 0.17 6.00 5.77 -2.91 -0.02 5.98 16 38 H 0.25 1.11 6.99 -2.91 -0.02 1.09 16 39 H 0.13 1.29 6.97 -2.91 -0.02 1.27 16 40 H 0.15 0.70 8.06 -2.91 -0.02 0.68 16 41 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.07 0.14 8.08 -2.39 -0.02 0.12 16 43 H 0.08 0.05 8.08 -2.39 -0.02 0.03 16 44 H 0.16 0.03 8.06 -2.91 -0.02 0.01 16 45 H 0.16 0.28 6.70 -2.91 -0.02 0.26 16 Total: -1.00 -84.65 363.02 0.27 -84.38 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -1.59 Total: 28.58 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 6.71 Total: 9.77 kcal Atomic # 7 Polarization: -140.45 SS G_CDS: -6.55 Total: -146.99 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -0.05 Total: -31.69 kcal Atomic # 14 Polarization: 54.21 SS G_CDS: 1.74 Total: 55.95 kcal Total: -84.65 0.27 -84.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594153093.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.618 kcal (2) G-P(sol) polarization free energy of solvation -84.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds