Wall clock time and date at job start Tue Mar 31 2020 14:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47308 * 2 1 4 4 H 1.08993 * 109.46738 * 55.00333 * 3 2 1 5 5 N 1.46492 * 109.47022 * 294.99953 * 3 2 1 6 6 C 1.34773 * 120.00028 * 110.70268 * 5 3 2 7 7 O 1.21611 * 119.99934 * 359.97438 * 6 5 3 8 8 C 1.47434 * 120.00594 * 179.97438 * 6 5 3 9 9 C 1.41291 * 126.40928 * 359.68748 * 8 6 5 10 10 N 1.30451 * 108.02359 * 179.84984 * 9 8 6 11 11 N 1.39939 * 108.88967 * 0.41281 * 10 9 8 12 12 C 1.46506 * 125.74870 * 179.73670 * 11 10 9 13 13 C 1.50703 * 109.46751 * 269.99652 * 12 11 10 14 14 H 1.07998 * 120.00150 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00071 * 180.02562 * 13 12 11 16 16 N 1.31521 * 119.99637 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00286 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47008 * 59.99873 * 17 15 13 19 19 H 1.48497 * 109.47406 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47144 * 300.00405 * 17 15 13 21 21 C 1.34253 * 108.49880 * 359.73198 * 11 10 9 22 22 C 1.50693 * 126.29554 * 179.97438 * 21 11 10 23 23 C 1.50707 * 109.47030 * 175.00310 * 3 2 1 24 24 C 1.38218 * 119.61559 * 236.88545 * 23 3 2 25 25 C 1.38627 * 119.16195 * 180.27491 * 24 23 3 26 26 C 1.38675 * 118.41825 * 359.47836 * 25 24 23 27 27 C 1.38182 * 119.16133 * 0.47432 * 26 25 24 28 28 N 1.31859 * 119.61844 * 56.85513 * 23 3 2 29 29 H 1.08996 * 109.46748 * 300.00252 * 1 2 3 30 30 H 1.09001 * 109.47060 * 59.99271 * 1 2 3 31 31 H 1.08995 * 109.47396 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47086 * 239.99845 * 2 1 3 33 33 H 1.09001 * 109.47237 * 120.00204 * 2 1 3 34 34 H 0.97004 * 120.00391 * 290.70115 * 5 3 2 35 35 H 1.07995 * 125.99083 * 0.02562 * 9 8 6 36 36 H 1.08995 * 109.47361 * 29.99122 * 12 11 10 37 37 H 1.08999 * 109.47106 * 150.00277 * 12 11 10 38 38 H 0.96995 * 119.99568 * 179.97438 * 16 15 13 39 39 H 1.08998 * 109.47387 * 269.99828 * 22 21 11 40 40 H 1.08999 * 109.47239 * 29.99664 * 22 21 11 41 41 H 1.09002 * 109.47624 * 150.00120 * 22 21 11 42 42 H 1.08002 * 120.42190 * 0.02562 * 24 23 3 43 43 H 1.08005 * 120.79186 * 179.72337 * 25 24 23 44 44 H 1.08008 * 120.41574 * 180.22101 * 26 25 24 45 45 H 1.07997 * 119.61525 * 179.76578 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 7 1.6525 2.0975 -1.2517 6 6 0.7258 3.0760 -1.2415 7 8 0.2110 3.4149 -0.1932 8 6 0.3361 3.7356 -2.5012 9 6 0.8482 3.4554 -3.7879 10 7 0.2532 4.2442 -4.6396 11 7 -0.6478 5.0612 -3.9475 12 6 -1.5062 6.0870 -4.5452 13 6 -0.7772 7.4059 -4.5598 14 1 0.2250 7.4734 -4.1631 15 6 -1.3902 8.5267 -5.0786 16 7 -2.6113 8.4448 -5.5603 17 14 -0.4870 10.1616 -5.0960 18 1 0.7577 10.0310 -5.8954 19 1 -1.3574 11.2017 -5.7009 20 1 -0.1432 10.5521 -3.7051 21 6 -0.5930 4.7466 -2.6435 22 6 -1.3973 5.3809 -1.5383 23 6 3.5420 1.4442 0.1238 24 6 4.1409 2.1304 1.1634 25 6 5.5235 2.1305 1.2650 26 6 6.2548 1.4282 0.3190 27 6 5.5863 0.7645 -0.6920 28 7 4.2695 0.7906 -0.7607 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.0629 1.8269 -2.0880 35 1 1.5985 2.7158 -4.0251 36 1 -1.7584 5.8001 -5.5660 37 1 -2.4198 6.1833 -3.9585 38 1 -3.0426 9.2334 -5.9249 39 1 -0.8509 6.2330 -1.1342 40 1 -2.3554 5.7182 -1.9337 41 1 -1.5676 4.6503 -0.7474 42 1 3.5396 2.6632 1.8852 43 1 6.0191 2.6617 2.0642 44 1 7.3334 1.4036 0.3694 45 1 6.1487 0.2183 -1.4348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823441349.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:26 Heat of formation + Delta-G solvation = 54.832413 kcal Electronic energy + Delta-G solvation = -27272.930681 eV Core-core repulsion = 23484.340851 eV Total energy + Delta-G solvation = -3788.589830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86388 -40.50129 -38.81896 -35.88786 -33.89933 -32.66521 -32.45959 -31.84535 -31.48563 -30.98281 -27.70091 -26.76459 -26.15002 -23.87485 -23.45836 -22.82930 -22.17227 -20.83816 -19.83072 -18.97307 -17.48767 -16.90520 -16.69015 -16.57883 -15.87938 -15.53178 -15.16476 -14.88017 -14.49230 -14.32433 -14.12962 -14.05892 -13.66279 -13.47224 -13.36216 -13.03793 -12.55751 -12.44923 -12.40270 -12.26305 -12.07638 -11.76680 -11.56306 -11.45633 -11.31044 -11.12396 -10.96662 -10.86254 -10.36141 -10.17477 -10.11888 -9.94071 -9.79030 -9.44853 -9.20188 -8.90830 -8.69754 -8.56165 -7.88657 -6.32610 -4.40426 0.81113 1.02161 2.21489 2.82742 3.17768 3.20521 3.24438 3.29053 3.47952 3.75260 3.87357 4.07540 4.25103 4.39901 4.59058 4.81598 4.84636 5.00191 5.03089 5.04646 5.13716 5.18662 5.29239 5.41005 5.44942 5.55016 5.67886 5.72089 5.79258 5.88238 5.90103 5.92089 5.96952 6.11485 6.14697 6.30493 6.42986 6.44218 6.58627 6.67396 6.82727 6.92432 7.19045 7.57241 7.72381 7.78427 7.79386 7.83466 8.40934 8.63059 8.65933 9.26317 10.75608 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015681 B = 0.002788 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.122902 B =10040.801803 C =10835.266346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C 0.196 3.804 4 H 0.113 0.887 5 N -0.720 5.720 6 C 0.607 3.393 7 O -0.557 6.557 8 C -0.332 4.332 9 C 0.059 3.941 10 N -0.296 5.296 11 N -0.314 5.314 12 C 0.252 3.748 13 C -0.540 4.540 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.908 3.092 18 H -0.274 1.274 19 H -0.283 1.283 20 H -0.273 1.273 21 C 0.165 3.835 22 C -0.092 4.092 23 C 0.120 3.880 24 C -0.157 4.157 25 C -0.075 4.075 26 C -0.176 4.176 27 C 0.099 3.901 28 N -0.472 5.472 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.402 0.598 35 H 0.175 0.825 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.270 0.730 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.133 0.867 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.669 -15.911 13.253 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.090 3.910 4 H 0.131 0.869 5 N -0.372 5.372 6 C 0.398 3.602 7 O -0.437 6.437 8 C -0.348 4.348 9 C -0.128 4.128 10 N -0.116 5.116 11 N -0.091 5.091 12 C 0.134 3.866 13 C -0.579 4.579 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.735 3.265 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.199 1.199 21 C 0.028 3.972 22 C -0.150 4.150 23 C -0.018 4.018 24 C -0.178 4.178 25 C -0.101 4.101 26 C -0.196 4.196 27 C -0.058 4.058 28 N -0.182 5.182 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.237 0.763 35 H 0.192 0.808 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.101 0.899 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.151 0.849 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 11.501 -15.532 11.874 22.682 hybrid contribution 1.443 1.049 0.875 1.988 sum 12.945 -14.482 12.749 23.234 Atomic orbital electron populations 1.21712 0.94913 1.01223 1.02715 1.21819 0.96597 0.95074 1.02758 1.19823 0.86767 0.94623 0.89810 0.86923 1.45661 1.43195 1.38688 1.09610 1.17325 0.77602 0.77574 0.87718 1.90672 1.55191 1.65038 1.32759 1.19649 1.11569 1.09664 0.93896 1.23734 0.99645 0.98952 0.90501 1.77149 1.06368 1.06634 1.21425 1.49367 1.29038 1.26731 1.03974 1.19839 0.88111 0.83021 0.95585 1.21215 1.01915 0.92216 1.42530 0.91740 1.24919 0.94957 0.99430 0.94322 1.69906 1.12629 1.30789 1.39414 0.86380 0.79546 0.81902 0.78695 1.19905 1.20859 1.19857 1.21466 0.95255 0.93346 0.87128 1.20563 0.98519 1.01210 0.94742 1.21555 0.96570 0.92787 0.90928 1.22042 0.95578 1.00269 0.99879 1.21606 0.93929 0.96444 0.98144 1.22163 1.01435 0.99418 0.96537 1.22765 0.90151 0.96272 0.96611 1.67439 1.07404 1.17376 1.25958 0.92505 0.92277 0.92915 0.90741 0.91536 0.76280 0.80815 0.92534 0.92568 0.92059 0.89914 0.90924 0.88773 0.84553 0.84787 0.84871 0.82690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.79 37.16 0.36 -1.21 16 2 C -0.12 -1.23 5.44 -26.73 -0.15 -1.38 16 3 C 0.20 2.23 2.62 -69.08 -0.18 2.05 16 4 H 0.11 1.39 6.68 -51.93 -0.35 1.04 16 5 N -0.72 -9.38 4.38 -56.01 -0.25 -9.63 16 6 C 0.61 10.01 7.46 -12.52 -0.09 9.92 16 7 O -0.56 -10.18 14.19 5.27 0.07 -10.11 16 8 C -0.33 -6.15 6.13 -105.06 -0.64 -6.80 16 9 C 0.06 1.06 11.50 -16.98 -0.20 0.86 16 10 N -0.30 -6.48 12.50 30.86 0.39 -6.10 16 11 N -0.31 -7.19 3.56 -57.77 -0.21 -7.40 16 12 C 0.25 6.32 5.97 -5.19 -0.03 6.29 16 13 C -0.54 -14.69 9.39 -34.44 -0.32 -15.01 16 14 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 15 C 0.07 1.82 5.46 -17.82 -0.10 1.73 16 16 N -0.89 -24.73 13.29 55.43 0.74 -24.00 16 17 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.17 3.40 7.01 -81.61 -0.57 2.83 16 22 C -0.09 -1.68 9.57 36.00 0.34 -1.33 16 23 C 0.12 1.30 5.74 -82.58 -0.47 0.83 16 24 C -0.16 -1.51 9.71 -39.45 -0.38 -1.89 16 25 C -0.08 -0.60 10.18 -39.28 -0.40 -1.00 16 26 C -0.18 -1.30 10.11 -39.44 -0.40 -1.70 16 27 C 0.10 0.85 11.18 -17.55 -0.20 0.66 16 28 N -0.47 -5.04 10.03 -9.47 -0.10 -5.13 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.73 7.43 -51.93 -0.39 0.35 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.40 4.83 7.78 -40.82 -0.32 4.51 16 35 H 0.17 2.36 7.50 -52.49 -0.39 1.97 16 36 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 37 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 38 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.07 1.29 7.05 -51.93 -0.37 0.92 16 41 H 0.09 1.62 6.50 -51.93 -0.34 1.28 16 42 H 0.14 1.15 7.95 -52.49 -0.42 0.73 16 43 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 44 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 45 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -31.33 383.06 -8.30 -39.63 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -6.28 Total: 6.21 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -3.43 Total: -5.17 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.58 Total: -52.25 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.07 Total: -10.11 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.33 -8.30 -39.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823441349.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.465 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds