Wall clock time and date at job start Tue Mar 31 2020 15:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47083 * 2 1 4 4 N 1.46500 * 109.47300 * 180.02562 * 3 2 1 5 5 C 1.38627 * 120.00487 * 180.02562 * 4 3 2 6 6 C 1.39171 * 120.48187 * 359.97438 * 5 4 3 7 7 C 1.39132 * 118.26719 * 180.02562 * 6 5 4 8 8 N 1.38634 * 120.48606 * 179.97438 * 7 6 5 9 9 C 1.46508 * 119.99815 * 0.02562 * 8 7 6 10 10 C 1.50698 * 109.46930 * 179.97438 * 9 8 7 11 11 C 1.38297 * 119.93202 * 89.99834 * 10 9 8 12 12 C 1.38101 * 120.07230 * 180.02562 * 11 10 9 13 13 C 1.38886 * 119.92536 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38106 * 119.92542 * 359.44577 * 23 13 12 25 25 N 1.33195 * 119.03105 * 0.25419 * 7 6 5 26 26 C 1.31732 * 120.87679 * 359.48165 * 25 7 6 27 27 N 1.31757 * 121.91482 * 0.53598 * 26 25 7 28 28 H 1.08998 * 109.47086 * 59.99832 * 1 2 3 29 29 H 1.08990 * 109.46954 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47016 * 299.99955 * 1 2 3 31 31 H 1.09001 * 109.47016 * 240.00045 * 2 1 3 32 32 H 1.08998 * 109.47086 * 120.00168 * 2 1 3 33 33 H 1.09001 * 109.47158 * 60.00131 * 3 2 1 34 34 H 1.08998 * 109.47297 * 300.00039 * 3 2 1 35 35 H 0.97001 * 119.99628 * 359.97438 * 4 3 2 36 36 H 1.07996 * 120.86922 * 0.02562 * 6 5 4 37 37 H 0.96994 * 120.00100 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46889 * 59.99536 * 9 8 7 39 39 H 1.09004 * 109.46798 * 299.99693 * 9 8 7 40 40 H 1.07999 * 119.96698 * 0.02562 * 11 10 9 41 41 H 1.07992 * 120.03608 * 179.97438 * 12 11 10 42 42 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 44 44 H 1.07997 * 119.96326 * 180.27708 * 24 23 13 45 45 H 1.08007 * 119.04296 * 180.24265 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1982 2.6430 -0.0002 6 6 3.5126 3.8541 0.0003 7 6 4.2544 5.0312 0.0001 8 7 3.6186 6.2632 0.0001 9 6 2.1551 6.3322 0.0007 10 6 1.7204 7.7751 0.0011 11 6 1.5208 8.4360 -1.1972 12 6 1.1229 9.7585 -1.2002 13 6 0.9227 10.4245 0.0020 14 8 0.5310 11.7243 0.0023 15 6 0.2430 12.2771 -1.1932 16 1 0.4064 11.7158 -2.1012 17 6 -0.2630 13.5665 -1.2569 18 7 -0.4625 14.2503 -0.1508 19 14 -0.6628 14.3322 -2.9132 20 1 -1.6881 13.5098 -3.6042 21 1 -1.1863 15.7069 -2.7096 22 1 0.5678 14.3884 -3.7424 23 6 1.1290 9.7596 1.2036 24 6 1.5213 8.4355 1.1999 25 7 5.5842 4.9572 -0.0056 26 6 6.1964 3.7907 -0.0009 27 7 5.5298 2.6542 -0.0008 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 3.9900 0.6024 -0.0006 36 1 2.4329 3.8796 0.0007 37 1 4.1426 7.0794 0.0004 38 1 1.7684 5.8362 0.8910 39 1 1.7676 5.8358 -0.8890 40 1 1.6763 7.9175 -2.1317 41 1 0.9677 10.2741 -2.1363 42 1 -0.8162 15.1524 -0.1954 43 1 0.9784 10.2762 2.1400 44 1 1.6776 7.9166 2.1340 45 1 7.2762 3.7653 -0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865502836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:39 Heat of formation + Delta-G solvation = 24.923771 kcal Electronic energy + Delta-G solvation = -25910.622281 eV Core-core repulsion = 22120.735515 eV Total energy + Delta-G solvation = -3789.886766 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.70477 -40.84166 -38.83273 -38.00219 -36.82333 -34.57099 -34.29900 -32.86612 -31.84223 -31.36633 -30.24441 -27.68368 -27.13116 -26.34163 -24.32748 -23.66287 -23.29135 -22.44525 -22.02326 -19.89120 -19.13997 -18.92484 -18.69706 -16.74317 -16.62508 -16.47863 -16.37770 -16.25863 -16.14201 -15.76678 -15.71012 -15.52304 -15.24366 -14.99219 -14.89485 -14.46672 -14.37577 -13.95765 -13.80471 -13.70635 -13.48489 -13.01398 -12.78852 -12.51707 -12.46004 -12.27181 -12.24785 -12.14505 -12.00486 -11.72117 -11.40617 -11.25027 -11.14620 -10.81682 -10.08808 -9.82475 -9.19696 -9.03802 -8.92059 -8.49226 -6.17664 0.39956 0.52424 0.56868 0.72856 1.34941 1.44719 1.50900 2.09329 2.16441 2.26170 2.85046 3.16038 3.16465 3.47648 3.58573 3.80800 3.90656 4.00711 4.01865 4.09907 4.13639 4.17555 4.37687 4.44473 4.55000 4.55496 4.63423 4.69456 4.70493 4.74851 4.79131 4.86201 5.02546 5.12882 5.17674 5.25168 5.26655 5.29131 5.43494 5.51211 5.67999 5.73081 5.83720 5.90199 6.00217 6.15696 6.47067 6.59580 6.84824 6.95281 7.56601 7.74430 8.73293 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016752 B = 0.002034 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.044005 B =13759.577643 C =14600.370231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.123 3.877 4 N -0.709 5.709 5 C 0.448 3.552 6 C -0.368 4.368 7 C 0.449 3.551 8 N -0.705 5.705 9 C 0.192 3.808 10 C -0.184 4.184 11 C -0.044 4.044 12 C -0.246 4.246 13 C 0.122 3.878 14 O -0.229 6.229 15 C -0.415 4.415 16 H 0.103 0.897 17 C -0.022 4.022 18 N -0.918 5.918 19 Si 1.018 2.982 20 H -0.256 1.256 21 H -0.272 1.272 22 H -0.258 1.258 23 C -0.207 4.207 24 C -0.042 4.042 25 N -0.637 5.637 26 C 0.367 3.633 27 N -0.632 5.632 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.410 0.590 36 H 0.149 0.851 37 H 0.405 0.595 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.120 0.880 42 H 0.273 0.727 43 H 0.114 0.886 44 H 0.148 0.852 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.529 -28.168 -1.291 28.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.001 4.001 4 N -0.341 5.341 5 C 0.206 3.794 6 C -0.401 4.401 7 C 0.208 3.792 8 N -0.336 5.336 9 C 0.069 3.931 10 C -0.185 4.185 11 C -0.063 4.063 12 C -0.265 4.265 13 C 0.071 3.929 14 O -0.135 6.135 15 C -0.491 4.491 16 H 0.121 0.879 17 C -0.220 4.220 18 N -0.556 5.556 19 Si 0.837 3.163 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.182 1.182 23 C -0.227 4.227 24 C -0.061 4.061 25 N -0.367 5.367 26 C 0.076 3.924 27 N -0.362 5.362 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.246 0.754 36 H 0.167 0.833 37 H 0.240 0.760 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.082 0.918 43 H 0.132 0.868 44 H 0.165 0.835 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 4.847 -27.815 -1.046 28.254 hybrid contribution -0.672 1.099 -0.463 1.369 sum 4.175 -26.716 -1.509 27.082 Atomic orbital electron populations 1.21689 0.93910 1.02741 1.02479 1.21653 0.97200 0.94416 1.03285 1.21624 0.77459 0.99036 1.01971 1.44534 1.06340 1.04567 1.78624 1.18425 0.88209 0.86997 0.85719 1.21318 1.01963 0.90817 1.26040 1.18452 0.88341 0.86670 0.85765 1.44844 1.06469 1.04461 1.77793 1.20097 0.78012 0.91991 1.02957 1.19487 1.09811 0.96476 0.92706 1.20958 0.94486 0.92332 0.98499 1.21254 1.10811 0.97138 0.97320 1.20011 0.92841 0.84597 0.95416 1.83946 1.75119 1.20801 1.33635 1.21790 1.44506 0.99154 0.83608 0.87944 1.26600 0.95830 0.95876 1.03711 1.70171 1.43620 1.11944 1.29868 0.84655 0.79450 0.77417 0.74768 1.18071 1.19698 1.18213 1.20460 1.10629 0.96215 0.95355 1.20898 0.94721 0.91822 0.98623 1.67983 1.09064 1.31249 1.28401 1.24844 1.01151 0.80636 0.85748 1.67982 1.07114 1.32467 1.28687 0.92258 0.91510 0.92233 0.90855 0.90826 0.91541 0.91601 0.75359 0.83342 0.75959 0.89813 0.90056 0.84277 0.86267 0.91776 0.86805 0.83463 0.76605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 71.98 0.71 -0.24 16 2 C -0.13 -0.87 6.05 30.59 0.19 -0.69 16 3 C 0.12 1.28 4.92 86.38 0.43 1.70 16 4 N -0.71 -10.46 5.71 -344.80 -1.97 -12.43 16 5 C 0.45 9.49 7.70 132.97 1.02 10.51 16 6 C -0.37 -7.87 8.62 22.71 0.20 -7.67 16 7 C 0.45 11.04 7.70 132.95 1.02 12.06 16 8 N -0.71 -16.25 5.71 -348.49 -1.99 -18.24 16 9 C 0.19 3.92 5.05 85.63 0.43 4.35 16 10 C -0.18 -5.04 5.25 -19.84 -0.10 -5.14 16 11 C -0.04 -1.39 9.69 22.25 0.22 -1.17 16 12 C -0.25 -10.13 9.17 22.39 0.21 -9.92 16 13 C 0.12 5.85 6.65 22.58 0.15 6.00 16 14 O -0.23 -13.47 9.76 -22.72 -0.22 -13.70 16 15 C -0.41 -23.65 9.49 67.92 0.64 -23.00 16 16 H 0.10 5.32 5.20 -2.91 -0.02 5.31 16 17 C -0.02 -1.25 5.49 84.84 0.47 -0.78 16 18 N -0.92 -55.66 13.67 21.62 0.30 -55.36 16 19 Si 1.02 42.09 29.55 68.60 2.03 44.12 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 21 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 22 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 23 C -0.21 -8.35 9.99 22.39 0.22 -8.12 16 24 C -0.04 -1.28 9.69 22.25 0.22 -1.07 16 25 N -0.64 -16.52 10.47 -197.83 -2.07 -18.59 16 26 C 0.37 8.19 12.28 180.91 2.22 10.41 16 27 N -0.63 -14.52 10.47 -197.82 -2.07 -16.59 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.07 0.71 7.97 -2.39 -0.02 0.69 16 34 H 0.07 0.71 7.97 -2.39 -0.02 0.69 16 35 H 0.41 5.19 8.60 -92.71 -0.80 4.39 16 36 H 0.15 2.60 5.65 -2.91 -0.02 2.58 16 37 H 0.40 10.10 8.59 -92.71 -0.80 9.30 16 38 H 0.08 1.46 7.91 -2.39 -0.02 1.45 16 39 H 0.08 1.46 7.91 -2.39 -0.02 1.44 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 41 H 0.12 5.04 5.64 -2.91 -0.02 5.03 16 42 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 43 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 44 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 45 H 0.22 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -71.88 381.01 1.68 -70.20 By element: Atomic # 1 Polarization: 33.92 SS G_CDS: -0.56 Total: 33.36 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 8.24 Total: -12.76 kcal Atomic # 7 Polarization: -113.41 SS G_CDS: -7.80 Total: -121.21 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.22 Total: -13.70 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -71.88 1.68 -70.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865502836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.121 kcal (2) G-P(sol) polarization free energy of solvation -71.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds