Wall clock time and date at job start Tue Mar 31 2020 14:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47210 * 2 1 4 4 C 1.34229 * 117.00016 * 179.97438 * 3 2 1 5 5 O 1.20817 * 120.00130 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99783 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47253 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47006 * 55.00064 * 7 6 4 9 9 C 1.50699 * 109.47389 * 175.00133 * 7 6 4 10 10 H 1.08000 * 119.99792 * 240.00038 * 9 7 6 11 11 C 1.37870 * 120.00084 * 59.99827 * 9 7 6 12 12 N 1.31522 * 120.00129 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00336 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47039 * 60.00269 * 13 11 9 15 15 H 1.48500 * 109.47330 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47142 * 300.00337 * 13 11 9 17 17 O 1.45206 * 109.47091 * 295.00154 * 7 6 4 18 18 C 1.34232 * 116.99998 * 149.99550 * 17 7 6 19 19 O 1.20825 * 119.99673 * 0.02562 * 18 17 7 20 20 C 1.50695 * 119.99791 * 179.97438 * 18 17 7 21 21 H 1.08994 * 109.54526 * 299.82460 * 20 18 17 22 22 C 1.53178 * 109.54388 * 60.00552 * 20 18 17 23 23 C 1.53090 * 109.16765 * 62.88197 * 22 20 18 24 24 O 1.42909 * 109.41289 * 57.60910 * 23 22 20 25 25 C 1.42903 * 114.09877 * 298.84585 * 24 23 22 26 26 H 1.09008 * 109.48251 * 301.16436 * 25 24 23 27 27 C 1.52999 * 109.48464 * 181.13983 * 25 24 23 28 28 C 1.53004 * 109.46776 * 64.99527 * 27 25 24 29 29 C 1.53097 * 109.41579 * 61.15343 * 25 24 23 30 30 H 1.09006 * 109.47456 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47708 * 300.00077 * 1 2 3 32 32 H 1.09004 * 109.47306 * 60.00166 * 1 2 3 33 33 H 1.08995 * 109.47412 * 239.99970 * 2 1 3 34 34 H 1.09004 * 109.47306 * 119.99834 * 2 1 3 35 35 H 1.09002 * 109.47475 * 60.00522 * 6 4 3 36 36 H 1.09001 * 109.47706 * 300.00448 * 6 4 3 37 37 H 0.96999 * 120.00258 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.52236 * 182.79251 * 22 20 18 39 39 H 1.09003 * 109.52048 * 302.97626 * 22 20 18 40 40 H 1.08992 * 109.48513 * 177.59549 * 23 22 20 41 41 H 1.09006 * 109.47785 * 297.63127 * 23 22 20 42 42 H 1.08993 * 109.47396 * 184.99657 * 27 25 24 43 43 H 1.08997 * 109.46491 * 304.99989 * 27 25 24 44 44 H 1.08998 * 109.46521 * 60.00695 * 28 27 25 45 45 H 1.09000 * 109.46479 * 180.02562 * 28 27 25 46 46 H 1.08993 * 109.47264 * 300.00211 * 28 27 25 47 47 H 1.08997 * 109.52151 * 182.48537 * 29 25 24 48 48 H 1.08997 * 109.51634 * 62.30184 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9374 0.0000 7 6 5.4486 2.8574 0.0001 8 1 5.7806 2.2494 -0.8415 9 6 6.0243 4.2445 -0.1242 10 1 6.6591 4.4926 -0.9620 11 6 5.7406 5.1969 0.8315 12 7 4.9678 4.8947 1.8519 13 14 6.4548 6.9161 0.6778 14 1 5.9920 7.5327 -0.5915 15 1 6.0017 7.7446 1.8239 16 1 7.9377 6.8380 0.6783 17 8 5.9016 2.2548 1.2411 18 6 7.0462 1.5550 1.1966 19 8 7.6498 1.4499 0.1552 20 6 7.5789 0.9015 2.4456 21 1 7.7685 1.6623 3.2027 22 6 6.5522 -0.1042 2.9755 23 6 6.3495 -1.2103 1.9367 24 8 7.6038 -1.8361 1.6584 25 6 8.5885 -0.9539 1.1159 26 1 8.2156 -0.5192 0.1884 27 6 9.8731 -1.7352 0.8329 28 6 9.6096 -2.7703 -0.2625 29 6 8.8809 0.1625 2.1218 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5844 3.4701 0.8895 36 1 3.5851 3.4691 -0.8904 37 1 4.7685 5.5646 2.5245 38 1 6.9162 -0.5403 3.9058 39 1 5.6048 0.4036 3.1565 40 1 5.6519 -1.9515 2.3263 41 1 5.9473 -0.7787 1.0201 42 1 10.6516 -1.0473 0.5031 43 1 10.1975 -2.2423 1.7416 44 1 9.2853 -2.2630 -1.1711 45 1 10.5248 -3.3272 -0.4638 46 1 8.8312 -3.4582 0.0673 47 1 9.5990 0.8610 1.6922 48 1 9.2920 -0.2683 3.0348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870618717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:54 Heat of formation + Delta-G solvation = -244.351734 kcal Electronic energy + Delta-G solvation = -30678.518444 eV Core-core repulsion = 26505.060594 eV Total energy + Delta-G solvation = -4173.457850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.181 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.16577 -39.72920 -38.12277 -36.20902 -35.25349 -33.88333 -33.25612 -32.99770 -31.61467 -30.28163 -29.50285 -26.38360 -25.58996 -23.57476 -23.24449 -22.44868 -21.47570 -20.88900 -19.83042 -18.89603 -17.27105 -16.73807 -16.24307 -16.10315 -15.95775 -15.87491 -15.46420 -15.14882 -14.65336 -14.57042 -14.05669 -13.89816 -13.51264 -13.35511 -13.13894 -12.97843 -12.80096 -12.56990 -12.29263 -12.19872 -11.82257 -11.62451 -11.53800 -11.43969 -11.36782 -11.28220 -11.04422 -10.93055 -10.87133 -10.79445 -10.67748 -10.33234 -10.27145 -10.16753 -9.95581 -9.73256 -9.45909 -9.30176 -8.88081 -8.78299 -8.67971 -6.28067 -4.45331 2.97581 3.17586 3.24092 3.26234 3.30858 3.42602 3.94726 4.13626 4.23228 4.87474 5.02440 5.06303 5.12683 5.12960 5.18600 5.28355 5.36404 5.39226 5.42519 5.45169 5.67249 5.69233 5.79201 5.87460 5.90259 5.96445 6.02271 6.06290 6.08222 6.09706 6.16325 6.23459 6.23800 6.31445 6.33811 6.38967 6.49085 6.56214 6.58909 6.91329 7.00277 7.25469 7.62882 7.64507 7.92331 8.01684 8.48013 8.62571 9.11882 9.32056 10.74217 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.008252 B = 0.005688 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.296345 B = 4921.819112 C = 7468.581847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.366 6.366 4 C 0.458 3.542 5 O -0.516 6.516 6 C -0.103 4.103 7 C 0.232 3.768 8 H 0.044 0.956 9 C -0.547 4.547 10 H 0.068 0.932 11 C 0.082 3.918 12 N -0.861 5.861 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.274 1.274 17 O -0.328 6.328 18 C 0.468 3.532 19 O -0.530 6.530 20 C -0.089 4.089 21 H 0.102 0.898 22 C -0.140 4.140 23 C 0.058 3.942 24 O -0.385 6.385 25 C 0.078 3.922 26 H 0.086 0.914 27 C -0.112 4.112 28 C -0.148 4.148 29 C -0.129 4.129 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.140 0.860 36 H 0.102 0.898 37 H 0.268 0.732 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 -9.739 1.503 10.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.404 6.404 6 C -0.140 4.140 7 C 0.179 3.821 8 H 0.062 0.938 9 C -0.584 4.584 10 H 0.087 0.913 11 C -0.125 4.125 12 N -0.496 5.496 13 Si 0.724 3.276 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.200 1.200 17 O -0.242 6.242 18 C 0.312 3.688 19 O -0.421 6.421 20 C -0.108 4.108 21 H 0.120 0.880 22 C -0.177 4.177 23 C -0.019 4.019 24 O -0.305 6.305 25 C 0.021 3.979 26 H 0.104 0.896 27 C -0.149 4.149 28 C -0.205 4.205 29 C -0.167 4.167 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.158 0.842 36 H 0.120 0.880 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.097 0.903 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.450 -10.177 1.380 10.372 hybrid contribution 0.284 1.238 0.025 1.270 sum -1.167 -8.939 1.405 9.124 Atomic orbital electron populations 1.21779 0.93315 1.02333 1.03325 1.22851 0.94849 0.81766 1.02019 1.86583 1.26129 1.30993 1.84694 1.24902 0.79477 0.94292 0.71089 1.90558 1.60212 1.43631 1.45973 1.21882 0.96788 0.88167 1.07189 1.20007 0.87943 0.92507 0.81649 0.93767 1.21330 1.32391 0.94388 1.10313 0.91348 1.25096 0.93837 0.99096 0.94460 1.69858 1.34357 1.34582 1.10837 0.86566 0.79861 0.83219 0.77940 1.19734 1.20907 1.19953 1.86583 1.36706 1.59366 1.41552 1.22897 0.80597 0.75901 0.89428 1.90472 1.58945 1.59729 1.32993 1.21064 0.95973 0.97979 0.95774 0.87960 1.22081 0.99886 0.96536 0.99227 1.22591 0.85593 0.95287 0.98438 1.87802 1.22263 1.36324 1.84062 1.22407 0.89084 0.89428 0.96964 0.89635 1.21497 0.95930 0.98193 0.99288 1.21698 1.01164 0.99060 0.98597 1.22026 0.96332 0.98144 1.00177 0.90839 0.91607 0.91715 0.91874 0.91752 0.84228 0.87970 0.92214 0.90747 0.89644 0.89367 0.91719 0.90857 0.91768 0.92800 0.93250 0.92153 0.90291 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.15 0.38 -1.20 16 2 C 0.06 0.84 6.19 37.15 0.23 1.07 16 3 O -0.37 -6.56 10.22 -39.26 -0.40 -6.96 16 4 C 0.46 9.47 7.84 36.00 0.28 9.75 16 5 O -0.52 -11.48 14.37 -23.94 -0.34 -11.83 16 6 C -0.10 -2.28 5.23 -27.88 -0.15 -2.42 16 7 C 0.23 5.81 1.64 -27.88 -0.05 5.77 16 8 H 0.04 1.17 6.97 -51.93 -0.36 0.81 16 9 C -0.55 -14.50 8.91 -34.44 -0.31 -14.80 16 10 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 11 C 0.08 2.10 5.25 -17.82 -0.09 2.01 16 12 N -0.86 -22.22 10.93 55.43 0.61 -21.61 16 13 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 14 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 O -0.33 -8.13 8.38 -44.46 -0.37 -8.51 16 18 C 0.47 10.77 5.88 36.00 0.21 10.98 16 19 O -0.53 -13.15 13.08 -18.75 -0.25 -13.40 16 20 C -0.09 -1.62 3.15 -91.59 -0.29 -1.91 16 21 H 0.10 1.78 8.14 -51.93 -0.42 1.35 16 22 C -0.14 -2.30 5.59 -26.59 -0.15 -2.45 16 23 C 0.06 0.99 6.62 37.20 0.25 1.24 16 24 O -0.38 -6.66 9.94 -35.23 -0.35 -7.01 16 25 C 0.08 1.33 2.35 -26.68 -0.06 1.26 16 26 H 0.09 1.73 5.83 -51.92 -0.30 1.43 16 27 C -0.11 -1.54 5.64 -26.73 -0.15 -1.69 16 28 C -0.15 -1.92 9.81 37.16 0.36 -1.56 16 29 C -0.13 -2.10 4.56 -26.59 -0.12 -2.22 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 34 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 35 H 0.14 3.31 6.22 -51.93 -0.32 2.98 16 36 H 0.10 2.09 8.14 -51.93 -0.42 1.66 16 37 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.32 6.56 -51.93 -0.34 0.98 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 47 H 0.08 1.30 8.02 -51.93 -0.42 0.89 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -29.57 386.31 -7.99 -37.56 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -8.03 Total: 7.14 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 0.35 Total: 3.82 kcal Atomic # 7 Polarization: -22.22 SS G_CDS: 0.61 Total: -21.61 kcal Atomic # 8 Polarization: -45.98 SS G_CDS: -1.71 Total: -47.70 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.57 -7.99 -37.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870618717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -206.795 kcal (2) G-P(sol) polarization free energy of solvation -29.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds