Wall clock time and date at job start Tue Mar 31 2020 14:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45202 * 109.47210 * 2 1 4 4 C 1.34229 * 117.00016 * 179.97438 * 3 2 1 5 5 O 1.20817 * 120.00130 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99783 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47253 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47006 * 55.00064 * 7 6 4 9 9 C 1.50699 * 109.47389 * 175.00133 * 7 6 4 10 10 H 1.08000 * 119.99792 * 240.00038 * 9 7 6 11 11 C 1.37870 * 120.00084 * 59.99827 * 9 7 6 12 12 N 1.31522 * 120.00129 * 0.02562 * 11 9 7 13 13 Si 1.86799 * 120.00336 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.47039 * 60.00269 * 13 11 9 15 15 H 1.48500 * 109.47330 * 179.97438 * 13 11 9 16 16 H 1.48503 * 109.47142 * 300.00337 * 13 11 9 17 17 O 1.45206 * 109.47091 * 295.00154 * 7 6 4 18 18 C 1.34232 * 116.99998 * 149.99550 * 17 7 6 19 19 O 1.20825 * 119.99673 * 0.02562 * 18 17 7 20 20 C 1.50695 * 119.99791 * 179.97438 * 18 17 7 21 21 H 1.08994 * 109.54526 * 299.82460 * 20 18 17 22 22 C 1.53178 * 109.54388 * 60.00552 * 20 18 17 23 23 C 1.53090 * 109.16765 * 62.88197 * 22 20 18 24 24 O 1.42909 * 109.41289 * 57.60910 * 23 22 20 25 25 C 1.42903 * 114.09877 * 298.84585 * 24 23 22 26 26 H 1.09008 * 109.48251 * 301.16436 * 25 24 23 27 27 C 1.52999 * 109.48464 * 181.13983 * 25 24 23 28 28 C 1.53004 * 109.46776 * 64.99527 * 27 25 24 29 29 C 1.53097 * 109.41579 * 61.15343 * 25 24 23 30 30 H 1.09006 * 109.47456 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47708 * 300.00077 * 1 2 3 32 32 H 1.09004 * 109.47306 * 60.00166 * 1 2 3 33 33 H 1.08995 * 109.47412 * 239.99970 * 2 1 3 34 34 H 1.09004 * 109.47306 * 119.99834 * 2 1 3 35 35 H 1.09002 * 109.47475 * 60.00522 * 6 4 3 36 36 H 1.09001 * 109.47706 * 300.00448 * 6 4 3 37 37 H 0.96999 * 120.00258 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.52236 * 182.79251 * 22 20 18 39 39 H 1.09003 * 109.52048 * 302.97626 * 22 20 18 40 40 H 1.08992 * 109.48513 * 177.59549 * 23 22 20 41 41 H 1.09006 * 109.47785 * 297.63127 * 23 22 20 42 42 H 1.08993 * 109.47396 * 184.99657 * 27 25 24 43 43 H 1.08997 * 109.46491 * 304.99989 * 27 25 24 44 44 H 1.08998 * 109.46521 * 60.00695 * 28 27 25 45 45 H 1.09000 * 109.46479 * 180.02562 * 28 27 25 46 46 H 1.08993 * 109.47264 * 300.00211 * 28 27 25 47 47 H 1.08997 * 109.52151 * 182.48537 * 29 25 24 48 48 H 1.08997 * 109.51634 * 62.30184 * 29 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9374 0.0000 7 6 5.4486 2.8574 0.0001 8 1 5.7806 2.2494 -0.8415 9 6 6.0243 4.2445 -0.1242 10 1 6.6591 4.4926 -0.9620 11 6 5.7406 5.1969 0.8315 12 7 4.9678 4.8947 1.8519 13 14 6.4548 6.9161 0.6778 14 1 5.9920 7.5327 -0.5915 15 1 6.0017 7.7446 1.8239 16 1 7.9377 6.8380 0.6783 17 8 5.9016 2.2548 1.2411 18 6 7.0462 1.5550 1.1966 19 8 7.6498 1.4499 0.1552 20 6 7.5789 0.9015 2.4456 21 1 7.7685 1.6623 3.2027 22 6 6.5522 -0.1042 2.9755 23 6 6.3495 -1.2103 1.9367 24 8 7.6038 -1.8361 1.6584 25 6 8.5885 -0.9539 1.1159 26 1 8.2156 -0.5192 0.1884 27 6 9.8731 -1.7352 0.8329 28 6 9.6096 -2.7703 -0.2625 29 6 8.8809 0.1625 2.1218 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.5844 3.4701 0.8895 36 1 3.5851 3.4691 -0.8904 37 1 4.7685 5.5646 2.5245 38 1 6.9162 -0.5403 3.9058 39 1 5.6048 0.4036 3.1565 40 1 5.6519 -1.9515 2.3263 41 1 5.9473 -0.7787 1.0201 42 1 10.6516 -1.0473 0.5031 43 1 10.1975 -2.2423 1.7416 44 1 9.2853 -2.2630 -1.1711 45 1 10.5248 -3.3272 -0.4638 46 1 8.8312 -3.4582 0.0673 47 1 9.5990 0.8610 1.6922 48 1 9.2920 -0.2683 3.0348 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870618717.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:55:53 Heat of formation + Delta-G solvation = -259.395107 kcal Electronic energy + Delta-G solvation = -30679.170774 eV Core-core repulsion = 26505.060594 eV Total energy + Delta-G solvation = -4174.110180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 328.181 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.80290 -41.30441 -39.73246 -37.82269 -37.05821 -35.29006 -34.84867 -34.61903 -32.89697 -31.96896 -30.75959 -28.24715 -27.05791 -25.01636 -24.58913 -23.85229 -23.02111 -22.16512 -21.53127 -20.56856 -19.04898 -18.49566 -17.92459 -17.55022 -17.38895 -17.30873 -17.17725 -16.84148 -16.41621 -16.17525 -15.49279 -15.29021 -14.75299 -14.68837 -14.60767 -14.38507 -14.16310 -13.91397 -13.78598 -13.59865 -13.35105 -13.08184 -12.99352 -12.82770 -12.79586 -12.75554 -12.60550 -12.54940 -12.45892 -12.16033 -12.06228 -11.84235 -11.67132 -11.55085 -11.46615 -11.43605 -11.34881 -10.94426 -10.74949 -10.66477 -10.28452 -8.24877 -6.50775 1.29671 1.40671 1.42474 1.50414 1.63408 1.81495 2.24320 2.36289 2.81575 3.07828 3.54806 3.74502 3.80972 3.91198 3.95188 4.01128 4.10616 4.14727 4.25370 4.31007 4.35425 4.44080 4.47055 4.49444 4.56368 4.58730 4.68838 4.80323 4.87305 4.87746 4.88936 4.93092 4.97336 4.99073 5.07053 5.08036 5.13776 5.18869 5.27451 5.31359 5.42074 5.50613 5.63221 5.94013 6.16309 6.26304 6.56763 6.87249 7.20845 7.33972 8.76982 Molecular weight = 328.18amu Principal moments of inertia in cm(-1) A = 0.008252 B = 0.005688 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3392.296345 B = 4921.819112 C = 7468.581847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 O -0.365 6.365 4 C 0.464 3.536 5 O -0.535 6.535 6 C -0.096 4.096 7 C 0.234 3.766 8 H 0.014 0.986 9 C -0.577 4.577 10 H 0.052 0.948 11 C 0.051 3.949 12 N -0.873 5.873 13 Si 0.956 3.044 14 H -0.265 1.265 15 H -0.271 1.271 16 H -0.282 1.282 17 O -0.339 6.339 18 C 0.456 3.544 19 O -0.557 6.557 20 C -0.089 4.089 21 H 0.115 0.885 22 C -0.131 4.131 23 C 0.059 3.941 24 O -0.383 6.383 25 C 0.076 3.924 26 H 0.043 0.957 27 C -0.108 4.108 28 C -0.146 4.146 29 C -0.124 4.124 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.129 0.871 36 H 0.114 0.886 37 H 0.273 0.727 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.023 0.977 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.075 0.925 46 H 0.052 0.948 47 H 0.072 0.928 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.772 -10.447 3.206 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.282 6.282 4 C 0.309 3.691 5 O -0.425 6.425 6 C -0.133 4.133 7 C 0.181 3.819 8 H 0.032 0.968 9 C -0.614 4.614 10 H 0.070 0.930 11 C -0.155 4.155 12 N -0.508 5.508 13 Si 0.781 3.219 14 H -0.189 1.189 15 H -0.195 1.195 16 H -0.207 1.207 17 O -0.253 6.253 18 C 0.301 3.699 19 O -0.450 6.450 20 C -0.108 4.108 21 H 0.133 0.867 22 C -0.168 4.168 23 C -0.017 4.017 24 O -0.303 6.303 25 C 0.019 3.981 26 H 0.061 0.939 27 C -0.145 4.145 28 C -0.203 4.203 29 C -0.161 4.161 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.146 0.854 36 H 0.132 0.868 37 H 0.083 0.917 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.131 0.869 41 H 0.041 0.959 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.056 0.944 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.539 -10.891 3.086 11.424 hybrid contribution 0.250 1.372 -0.548 1.498 sum -1.289 -9.519 2.539 9.936 Atomic orbital electron populations 1.21808 0.89968 1.04418 1.03690 1.23272 0.97396 0.79635 1.02093 1.86548 1.24081 1.33578 1.84002 1.24452 0.80453 0.93340 0.70836 1.90563 1.60998 1.44022 1.46951 1.21643 0.95117 0.89401 1.07144 1.19864 0.89602 0.91461 0.81016 0.96796 1.21405 1.33517 0.95663 1.10787 0.93021 1.25659 0.93911 1.02062 0.93870 1.69932 1.34315 1.35656 1.10939 0.85658 0.78511 0.79225 0.78552 1.18944 1.19540 1.20732 1.86568 1.37765 1.59870 1.41135 1.23958 0.79752 0.75299 0.90906 1.90455 1.59462 1.60508 1.34585 1.21266 0.97361 0.98676 0.93510 0.86708 1.22060 0.98919 0.95604 1.00243 1.22575 0.86032 0.96158 0.96982 1.87806 1.22180 1.36414 1.83859 1.22399 0.90161 0.90186 0.95387 0.93948 1.21521 0.94296 0.98279 1.00422 1.21685 1.02162 0.98827 0.97672 1.22055 0.95035 0.97575 1.01446 0.87839 0.91341 0.91239 0.91825 0.91798 0.85383 0.86819 0.91730 0.87014 0.90825 0.86894 0.95855 0.89946 0.89675 0.94435 0.90615 0.92909 0.90912 0.87230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 10.29 71.98 0.74 -1.94 16 2 C 0.05 1.37 6.19 71.98 0.45 1.82 16 3 O -0.36 -13.10 10.22 -51.41 -0.53 -13.62 16 4 C 0.46 19.81 7.84 71.24 0.56 20.37 16 5 O -0.54 -24.93 14.37 26.96 0.39 -24.54 16 6 C -0.10 -4.40 5.23 29.85 0.16 -4.25 16 7 C 0.23 12.34 1.64 29.85 0.05 12.39 16 8 H 0.01 0.80 6.97 -2.38 -0.02 0.78 16 9 C -0.58 -31.79 8.91 25.60 0.23 -31.56 16 10 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 11 C 0.05 2.63 5.25 84.65 0.44 3.08 16 12 N -0.87 -45.31 10.93 21.45 0.23 -45.07 16 13 Si 0.96 41.08 29.54 68.60 2.03 43.10 16 14 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 15 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 17 O -0.34 -17.52 8.38 -46.47 -0.39 -17.91 16 18 C 0.46 21.78 5.88 71.23 0.42 22.20 16 19 O -0.56 -29.33 13.08 21.97 0.29 -29.04 16 20 C -0.09 -3.22 3.15 -11.42 -0.04 -3.25 16 21 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 22 C -0.13 -4.14 5.59 30.68 0.17 -3.97 16 23 C 0.06 2.02 6.62 72.01 0.48 2.50 16 24 O -0.38 -12.90 9.94 -148.98 -1.48 -14.38 16 25 C 0.08 2.55 2.35 30.63 0.07 2.63 16 26 H 0.04 1.81 5.83 -2.38 -0.01 1.79 16 27 C -0.11 -2.80 5.64 30.60 0.17 -2.63 16 28 C -0.15 -3.67 9.81 71.98 0.71 -2.96 16 29 C -0.12 -3.86 4.56 30.69 0.14 -3.72 16 30 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.06 1.76 8.13 -2.39 -0.02 1.74 16 34 H 0.06 1.78 8.13 -2.38 -0.02 1.76 16 35 H 0.13 6.24 6.22 -2.39 -0.01 6.23 16 36 H 0.11 4.83 8.14 -2.39 -0.02 4.81 16 37 H 0.27 13.30 8.31 -92.71 -0.77 12.53 16 38 H 0.11 2.74 8.14 -2.39 -0.02 2.73 16 39 H 0.07 2.52 8.05 -2.39 -0.02 2.50 16 40 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 41 H 0.02 0.99 6.56 -2.38 -0.02 0.97 16 42 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.05 1.39 7.82 -2.39 -0.02 1.37 16 47 H 0.07 2.36 8.02 -2.39 -0.02 2.34 16 48 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -66.96 386.31 6.22 -60.74 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.94 Total: 30.03 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 4.74 Total: 10.70 kcal Atomic # 7 Polarization: -45.31 SS G_CDS: 0.23 Total: -45.07 kcal Atomic # 8 Polarization: -97.77 SS G_CDS: -1.72 Total: -99.49 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.10 kcal Total: -66.96 6.22 -60.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870618717.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.656 kcal (2) G-P(sol) polarization free energy of solvation -66.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -265.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -259.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds