Wall clock time and date at job start Tue Mar 31 2020 15:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 109.46552 * 2 1 4 4 H 1.08990 * 109.47326 * 305.00108 * 3 2 1 5 5 C 1.53002 * 109.46864 * 65.00275 * 3 2 1 6 6 N 1.46499 * 109.46761 * 185.00179 * 3 2 1 7 7 N 1.28469 * 124.88281 * 299.96984 * 6 3 2 8 8 C 1.31829 * 110.07225 * 180.02562 * 7 6 3 9 9 C 1.47660 * 126.52148 * 179.97438 * 8 7 6 10 10 O 1.21568 * 120.00015 * 180.02562 * 9 8 7 11 11 N 1.34784 * 120.00286 * 0.02562 * 9 8 7 12 12 C 1.39173 * 120.00149 * 174.84897 * 11 9 8 13 13 C 1.39700 * 119.57747 * 185.31948 * 12 11 9 14 14 C 1.38645 * 119.49328 * 179.97438 * 13 12 11 15 15 C 1.38349 * 118.67176 * 359.97438 * 14 13 12 16 16 C 1.40572 * 119.13674 * 0.02562 * 15 14 13 17 17 C 1.41337 * 119.78990 * 180.02562 * 16 15 14 18 18 H 1.08007 * 119.99552 * 359.97438 * 17 16 15 19 19 C 1.40025 * 120.00537 * 180.02562 * 17 16 15 20 20 N 1.30748 * 119.99359 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00140 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47309 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46909 * 120.00039 * 21 19 17 24 24 H 1.48501 * 109.47137 * 239.99626 * 21 19 17 25 25 N 1.31919 * 119.57554 * 5.04469 * 12 11 9 26 26 C 1.41517 * 106.95580 * 0.24370 * 8 7 6 27 27 C 1.35032 * 124.88474 * 120.02171 * 6 3 2 28 28 C 1.50702 * 126.38115 * 359.97438 * 27 6 3 29 29 H 1.09007 * 109.46266 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47392 * 299.99526 * 1 2 3 31 31 H 1.08994 * 109.47339 * 60.00105 * 1 2 3 32 32 H 1.08994 * 109.47392 * 240.00474 * 2 1 3 33 33 H 1.08994 * 109.47339 * 119.99895 * 2 1 3 34 34 H 1.09004 * 109.47159 * 59.99938 * 5 3 2 35 35 H 1.09001 * 109.46682 * 179.97438 * 5 3 2 36 36 H 1.08998 * 109.46823 * 299.99598 * 5 3 2 37 37 H 0.97001 * 119.99465 * 354.57471 * 11 9 8 38 38 H 1.08004 * 120.25052 * 359.95244 * 13 12 11 39 39 H 1.07996 * 120.66027 * 180.02562 * 14 13 12 40 40 H 1.08001 * 120.42804 * 179.97438 * 15 14 13 41 41 H 0.96998 * 119.99211 * 180.02562 * 20 19 17 42 42 H 1.07997 * 127.24733 * 179.76048 * 26 8 7 43 43 H 1.08999 * 109.46953 * 90.00590 * 28 27 6 44 44 H 1.09006 * 109.46990 * 210.00416 * 28 27 6 45 45 H 1.08997 * 109.47101 * 330.00261 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 6 1.6351 2.1266 1.3074 6 7 3.4999 1.4445 -0.1204 7 7 4.3066 0.8926 0.7134 8 6 5.5530 1.0714 0.3230 9 6 6.7672 0.5895 1.0114 10 8 7.8645 0.8237 0.5435 11 7 6.6589 -0.1099 2.1584 12 6 7.7940 -0.6558 2.7504 13 6 7.6598 -1.4720 3.8762 14 6 8.7917 -2.0153 4.4642 15 6 10.0281 -1.7302 3.9127 16 6 10.0973 -0.9020 2.7791 17 6 11.3532 -0.6022 2.2041 18 1 12.2557 -1.0088 2.6361 19 6 11.4274 0.2228 1.0751 20 7 10.3348 0.7154 0.5525 21 14 13.0873 0.6195 0.3157 22 1 14.1597 -0.0566 1.0889 23 1 13.1152 0.1421 -1.0902 24 1 13.3064 2.0880 0.3442 25 7 8.9824 -0.4004 2.2379 26 6 5.5061 1.8184 -0.8781 27 6 4.1914 2.0272 -1.1232 28 6 3.6082 2.7758 -2.2940 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8934 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.0698 1.5875 2.1492 35 1 1.9987 3.1541 1.3076 36 1 0.5488 2.1252 1.3969 37 1 5.7903 -0.2294 2.5734 38 1 6.6818 -1.6778 4.2856 39 1 8.7098 -2.6491 5.3348 40 1 10.9284 -2.1381 4.3481 41 1 10.3862 1.2865 -0.2298 42 1 6.3431 2.1501 -1.4746 43 1 3.5107 3.8309 -2.0384 44 1 4.2660 2.6703 -3.1568 45 1 2.6264 2.3677 -2.5336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882473708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:07 Heat of formation + Delta-G solvation = 91.914979 kcal Electronic energy + Delta-G solvation = -27661.622410 eV Core-core repulsion = 23874.640601 eV Total energy + Delta-G solvation = -3786.981809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.53904 -39.00573 -37.33911 -36.54556 -34.02089 -33.00515 -32.61833 -31.68600 -30.23448 -29.40741 -28.79415 -26.97116 -25.68751 -25.16804 -23.61771 -21.71407 -21.12312 -20.90891 -20.11018 -18.64209 -17.65779 -17.00215 -16.03222 -15.93464 -15.84000 -15.38716 -14.59655 -14.36070 -14.13972 -14.11206 -13.83760 -13.57938 -13.26783 -13.24367 -13.10079 -12.86899 -12.73225 -12.59758 -12.36375 -12.14879 -11.94642 -11.86809 -11.78563 -11.29786 -11.15902 -11.10569 -10.87745 -10.56846 -10.49234 -10.40491 -9.85277 -9.61826 -9.08562 -8.95856 -8.77373 -8.71064 -7.88760 -7.15729 -6.86547 -6.06317 -4.32292 1.94520 2.39316 2.48281 2.94802 3.22740 3.23071 3.26416 3.33941 3.94187 4.12709 4.14433 4.32232 4.44082 4.55827 4.64519 4.79949 4.93470 4.95715 5.02095 5.09118 5.14302 5.28257 5.33651 5.46433 5.59936 5.60465 5.65614 5.69523 5.89393 5.89895 5.92912 6.11759 6.13276 6.20008 6.57603 6.67068 6.79778 6.91672 6.93999 6.97967 7.31376 7.64116 7.71658 7.89023 8.08729 8.21445 8.31282 8.57562 8.82744 9.12525 9.35701 10.32520 10.56147 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015396 B = 0.003313 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.180892 B = 8450.250935 C =10005.294870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.134 4.134 3 C 0.148 3.852 4 H 0.104 0.896 5 C -0.163 4.163 6 N -0.282 5.282 7 N -0.267 5.267 8 C 0.002 3.998 9 C 0.558 3.442 10 O -0.399 6.399 11 N -0.654 5.654 12 C 0.374 3.626 13 C -0.355 4.355 14 C -0.036 4.036 15 C -0.306 4.306 16 C 0.271 3.729 17 C -0.426 4.426 18 H 0.082 0.918 19 C 0.057 3.943 20 N -0.656 5.656 21 Si 0.896 3.104 22 H -0.263 1.263 23 H -0.275 1.275 24 H -0.276 1.276 25 N -0.475 5.475 26 C -0.179 4.179 27 C -0.001 4.001 28 C -0.080 4.080 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.404 0.596 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.272 0.728 42 H 0.159 0.841 43 H 0.074 0.926 44 H 0.084 0.916 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.045 4.384 -5.392 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.172 4.172 3 C 0.047 3.953 4 H 0.122 0.878 5 C -0.221 4.221 6 N -0.071 5.071 7 N -0.102 5.102 8 C -0.159 4.159 9 C 0.338 3.662 10 O -0.260 6.260 11 N -0.301 5.301 12 C 0.136 3.864 13 C -0.381 4.381 14 C -0.061 4.061 15 C -0.329 4.329 16 C 0.146 3.854 17 C -0.456 4.456 18 H 0.101 0.899 19 C -0.171 4.171 20 N -0.274 5.274 21 Si 0.720 3.280 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.201 1.201 25 N -0.194 5.194 26 C -0.206 4.206 27 C -0.125 4.125 28 C -0.139 4.139 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.238 0.762 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.177 0.823 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -19.972 4.778 -5.893 21.365 hybrid contribution 0.513 -0.098 0.038 0.523 sum -19.460 4.680 -5.855 20.853 Atomic orbital electron populations 1.21794 0.94305 1.02580 1.02131 1.21876 0.96537 0.94632 1.04136 1.21587 0.74302 0.98682 1.00727 0.87828 1.22183 1.02233 1.01076 0.96611 1.45546 1.06726 1.38538 1.16282 1.73461 1.00603 1.18279 1.17889 1.22471 0.91249 1.04348 0.97865 1.17258 0.86824 0.80528 0.81611 1.91241 1.23257 1.49273 1.62196 1.43204 1.09095 1.53410 1.24384 1.18594 0.87698 0.90742 0.89410 1.20498 0.97707 1.14877 1.04974 1.20551 0.92656 0.96195 0.96659 1.21612 0.96093 1.11226 1.03951 1.18399 0.91471 0.87569 0.87976 1.19600 0.92347 1.24573 1.09099 0.89947 1.26184 0.97364 0.96164 0.97434 1.70331 1.26486 1.16668 1.13944 0.86463 0.83274 0.78767 0.79465 1.18667 1.20092 1.20098 1.68716 0.94785 1.25633 1.30235 1.21517 0.95485 1.04708 0.98933 1.21296 0.92111 1.04117 0.94986 1.20298 1.00735 0.98938 0.93892 0.91882 0.91966 0.92522 0.91264 0.90011 0.90624 0.91943 0.90310 0.76176 0.89066 0.88644 0.88588 0.91633 0.82336 0.90704 0.89711 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.67 37.16 0.36 -0.47 16 2 C -0.13 -1.09 5.58 -26.73 -0.15 -1.24 16 3 C 0.15 1.27 3.02 -67.92 -0.21 1.07 16 4 H 0.10 0.65 6.55 -51.93 -0.34 0.31 16 5 C -0.16 -1.28 9.12 37.16 0.34 -0.94 16 6 N -0.28 -3.61 3.04 -50.66 -0.15 -3.77 16 7 N -0.27 -4.30 11.34 33.42 0.38 -3.92 16 8 C 0.00 0.04 7.13 -82.77 -0.59 -0.55 16 9 C 0.56 12.82 7.78 -12.41 -0.10 12.72 16 10 O -0.40 -10.73 12.68 5.31 0.07 -10.67 16 11 N -0.65 -14.62 5.38 -12.31 -0.07 -14.68 16 12 C 0.37 9.72 7.43 -155.05 -1.15 8.57 16 13 C -0.35 -8.43 9.96 -38.89 -0.39 -8.82 16 14 C -0.04 -0.86 10.15 -39.39 -0.40 -1.26 16 15 C -0.31 -7.95 9.83 -38.66 -0.38 -8.33 16 16 C 0.27 7.87 6.55 -85.00 -0.56 7.31 16 17 C -0.43 -12.01 9.14 -37.73 -0.34 -12.35 16 18 H 0.08 2.18 7.85 -52.48 -0.41 1.76 16 19 C 0.06 1.55 5.50 -17.34 -0.10 1.46 16 20 N -0.66 -18.65 8.98 55.55 0.50 -18.15 16 21 Si 0.90 19.68 29.56 -169.99 -5.02 14.65 16 22 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 24 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 25 N -0.47 -13.90 5.73 -10.27 -0.06 -13.96 16 26 C -0.18 -2.92 10.73 -39.36 -0.42 -3.34 16 27 C 0.00 -0.02 6.92 -82.21 -0.57 -0.59 16 28 C -0.08 -0.65 9.92 36.01 0.36 -0.29 16 29 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.06 0.30 6.56 -51.93 -0.34 -0.04 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.42 6.56 -51.93 -0.34 0.08 16 37 H 0.40 7.65 8.43 -40.82 -0.34 7.31 16 38 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 39 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 41 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 42 H 0.16 2.53 8.06 -52.49 -0.42 2.11 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.40 7.03 -51.93 -0.36 0.03 16 LS Contribution 375.08 15.07 5.65 5.65 Total: -1.00 -34.65 375.08 -9.35 -44.00 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -6.35 Total: 7.90 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -4.29 Total: -7.06 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.60 Total: -54.48 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.67 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.65 -9.35 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.916 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds