Wall clock time and date at job start Tue Mar 31 2020 15:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47241 * 2 1 4 4 H 1.08999 * 109.46518 * 55.00298 * 3 2 1 5 5 C 1.52995 * 109.47480 * 295.00149 * 3 2 1 6 6 N 1.46504 * 109.46893 * 175.00121 * 3 2 1 7 7 N 1.28463 * 124.88591 * 60.00135 * 6 3 2 8 8 C 1.31821 * 110.07220 * 179.97438 * 7 6 3 9 9 C 1.47672 * 126.51850 * 180.25956 * 8 7 6 10 10 O 1.21564 * 119.99805 * 179.69075 * 9 8 7 11 11 N 1.34780 * 119.99819 * 359.69629 * 9 8 7 12 12 C 1.39178 * 119.99399 * 174.83267 * 11 9 8 13 13 C 1.39699 * 119.57381 * 185.71074 * 12 11 9 14 14 C 1.38645 * 119.49450 * 179.97438 * 13 12 11 15 15 C 1.38357 * 118.67087 * 0.02562 * 14 13 12 16 16 C 1.40577 * 119.13388 * 359.97438 * 15 14 13 17 17 C 1.41338 * 119.78589 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99425 * 5.70478 * 17 16 15 19 19 C 1.40026 * 119.99989 * 185.69811 * 17 16 15 20 20 N 1.30743 * 119.99910 * 354.92935 * 19 17 16 21 21 Si 1.86793 * 119.99983 * 174.92025 * 19 17 16 22 22 H 1.48505 * 109.46882 * 95.00249 * 21 19 17 23 23 H 1.48496 * 109.47274 * 215.00390 * 21 19 17 24 24 H 1.48504 * 109.47157 * 335.00393 * 21 19 17 25 25 N 1.31914 * 119.58041 * 5.44070 * 12 11 9 26 26 C 1.41515 * 106.95985 * 0.02562 * 8 7 6 27 27 C 1.35040 * 124.88160 * 239.99789 * 6 3 2 28 28 C 1.50701 * 126.38159 * 359.97296 * 27 6 3 29 29 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46990 * 299.99930 * 1 2 3 31 31 H 1.08997 * 109.47239 * 59.99685 * 1 2 3 32 32 H 1.09005 * 109.46990 * 240.00070 * 2 1 3 33 33 H 1.08997 * 109.47239 * 120.00315 * 2 1 3 34 34 H 1.09002 * 109.46940 * 59.99456 * 5 3 2 35 35 H 1.08996 * 109.47687 * 179.97438 * 5 3 2 36 36 H 1.08996 * 109.47151 * 300.00357 * 5 3 2 37 37 H 0.96996 * 119.99895 * 354.83217 * 11 9 8 38 38 H 1.08001 * 120.25446 * 359.95826 * 13 12 11 39 39 H 1.07998 * 120.66521 * 180.02562 * 14 13 12 40 40 H 1.08000 * 120.42705 * 179.97438 * 15 14 13 41 41 H 0.96997 * 119.99918 * 179.97438 * 20 19 17 42 42 H 1.07994 * 127.24909 * 179.97438 * 26 8 7 43 43 H 1.08999 * 109.47125 * 270.00687 * 28 27 6 44 44 H 1.08998 * 109.47350 * 30.01460 * 28 27 6 45 45 H 1.09007 * 109.47096 * 150.01609 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6353 2.1266 -1.3073 6 7 3.5001 1.4441 0.1204 7 7 4.3067 0.8918 -0.7131 8 6 5.5530 1.0707 -0.3228 9 6 6.7674 0.5924 -1.0136 10 8 7.8650 0.8306 -0.5484 11 7 6.6589 -0.1081 -2.1600 12 6 7.8026 -0.4661 -2.8676 13 6 7.6770 -1.0861 -4.1131 14 6 8.8175 -1.4415 -4.8168 15 6 10.0538 -1.1692 -4.2586 16 6 10.1141 -0.5430 -3.0014 17 6 11.3697 -0.2579 -2.4185 18 1 12.2770 -0.4359 -2.9767 19 6 11.4373 0.2556 -1.1176 20 7 10.3392 0.5644 -0.4788 21 14 13.0964 0.4990 -0.2946 22 1 13.5454 1.9009 -0.4910 23 1 12.9745 0.2173 1.1582 24 1 14.0885 -0.4274 -0.8970 25 7 8.9914 -0.2107 -2.3560 26 6 5.5061 1.8129 0.8812 27 6 4.1917 2.0266 1.1234 28 6 3.6086 2.7757 2.2938 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.5490 2.1252 -1.3968 35 1 1.9982 3.1544 -1.3071 36 1 2.0698 1.5876 -2.1491 37 1 5.7837 -0.3627 -2.4917 38 1 6.6989 -1.2874 -4.5246 39 1 8.7424 -1.9214 -5.7814 40 1 10.9606 -1.4342 -4.7819 41 1 10.3860 0.9197 0.4225 42 1 6.3429 2.1398 1.4805 43 1 3.5117 3.8308 2.0380 44 1 2.6265 2.3681 2.5333 45 1 4.2661 2.6701 3.1568 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473709.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:10 Heat of formation + Delta-G solvation = 70.229183 kcal Electronic energy + Delta-G solvation = -27655.293034 eV Core-core repulsion = 23867.370858 eV Total energy + Delta-G solvation = -3787.922176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.70012 -40.87150 -39.18344 -37.38571 -35.95826 -34.88592 -33.68978 -32.67049 -32.22662 -30.99355 -29.91385 -27.94883 -27.51523 -26.28701 -24.82286 -23.48112 -22.82395 -22.02636 -21.40813 -20.18278 -19.43565 -18.28704 -17.71480 -17.33589 -17.03412 -16.45257 -16.28080 -16.08213 -15.74054 -15.57378 -15.06306 -14.95102 -14.66904 -14.55676 -14.06656 -14.01103 -13.81881 -13.71434 -13.51288 -13.27700 -13.06879 -12.89564 -12.72534 -12.72085 -12.56665 -12.53348 -12.32482 -11.99368 -11.80474 -11.77764 -11.60066 -11.52268 -10.94805 -10.87854 -10.01343 -9.91118 -9.84764 -9.15163 -8.84377 -8.05435 -6.42220 0.56108 0.99301 1.17796 1.33862 1.40370 1.51410 1.52879 1.56984 2.27551 2.29044 2.61669 3.02240 3.28978 3.69755 3.74586 3.77937 4.00597 4.03709 4.04756 4.33038 4.37697 4.41840 4.49758 4.60271 4.67611 4.72055 4.75101 4.77948 4.88167 4.91128 4.95132 5.02966 5.04382 5.05904 5.08984 5.11323 5.26499 5.28496 5.38997 5.44105 5.67390 5.82659 5.90840 5.97964 6.14296 6.34362 6.65623 6.80769 7.00497 7.06220 7.57524 8.32117 8.57725 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015453 B = 0.003299 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.513457 B = 8484.159113 C =10016.497075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.137 3.863 4 H 0.141 0.859 5 C -0.161 4.161 6 N -0.269 5.269 7 N -0.268 5.268 8 C -0.033 4.033 9 C 0.553 3.447 10 O -0.449 6.449 11 N -0.646 5.646 12 C 0.349 3.651 13 C -0.347 4.347 14 C -0.033 4.033 15 C -0.325 4.325 16 C 0.235 3.765 17 C -0.464 4.464 18 H 0.089 0.911 19 C 0.009 3.991 20 N -0.695 5.695 21 Si 0.979 3.021 22 H -0.266 1.266 23 H -0.273 1.273 24 H -0.254 1.254 25 N -0.510 5.510 26 C -0.210 4.210 27 C 0.022 3.978 28 C -0.080 4.080 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.418 0.582 38 H 0.128 0.872 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.271 0.729 42 H 0.150 0.850 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.998 4.301 6.239 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.038 3.962 4 H 0.159 0.841 5 C -0.218 4.218 6 N -0.059 5.059 7 N -0.105 5.105 8 C -0.192 4.192 9 C 0.335 3.665 10 O -0.313 6.313 11 N -0.294 5.294 12 C 0.111 3.889 13 C -0.372 4.372 14 C -0.057 4.057 15 C -0.348 4.348 16 C 0.110 3.890 17 C -0.495 4.495 18 H 0.107 0.893 19 C -0.216 4.216 20 N -0.314 5.314 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.177 1.177 25 N -0.230 5.230 26 C -0.238 4.238 27 C -0.103 4.103 28 C -0.138 4.138 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.130 0.870 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.255 0.745 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.168 0.832 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -22.993 4.536 6.788 24.400 hybrid contribution 1.149 -0.290 -0.290 1.220 sum -21.844 4.246 6.498 23.183 Atomic orbital electron populations 1.21776 0.91776 1.03140 1.03530 1.21844 0.98607 0.93808 1.02604 1.22155 0.71569 0.99722 1.02723 0.84120 1.22189 1.04209 1.00212 0.95193 1.46098 1.08133 1.36476 1.15235 1.73365 0.99866 1.18652 1.18655 1.21907 0.90863 1.07271 0.99169 1.17831 0.87801 0.79699 0.81156 1.91209 1.25605 1.51860 1.62614 1.43193 1.07892 1.54713 1.23619 1.19101 0.87849 0.92740 0.89198 1.20949 0.99436 1.18816 0.97988 1.21032 0.91468 0.94963 0.98202 1.21833 0.97768 1.14869 1.00349 1.18934 0.92008 0.88877 0.89223 1.19918 0.92383 1.37560 0.99595 0.89311 1.27110 1.01655 0.94580 0.98302 1.70532 1.29032 1.21986 1.09875 0.85249 0.77787 0.79372 0.77591 1.19061 1.19776 1.17741 1.68666 0.95769 1.24479 1.34048 1.21619 0.97340 1.06199 0.98691 1.21900 0.90797 1.02224 0.95405 1.20531 1.02092 0.99377 0.91785 0.91855 0.90655 0.90980 0.92209 0.92226 0.87041 0.92332 0.92844 0.74502 0.85447 0.84225 0.87314 0.91848 0.83232 0.88779 0.88568 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.67 71.98 0.70 -0.37 16 2 C -0.13 -1.81 5.58 30.59 0.17 -1.64 16 3 C 0.14 1.94 3.02 44.99 0.14 2.08 16 4 H 0.14 1.03 6.55 -2.39 -0.02 1.01 16 5 C -0.16 -2.11 9.12 71.98 0.66 -1.45 16 6 N -0.27 -6.52 3.04 -314.20 -0.96 -7.47 16 7 N -0.27 -8.71 11.34 -48.19 -0.55 -9.26 16 8 C -0.03 -1.31 7.13 42.45 0.30 -1.00 16 9 C 0.55 27.06 7.78 86.73 0.67 27.74 16 10 O -0.45 -26.05 12.75 -3.92 -0.05 -26.10 16 11 N -0.65 -30.12 5.38 -311.13 -1.67 -31.79 16 12 C 0.35 18.74 7.43 133.28 0.99 19.73 16 13 C -0.35 -16.23 9.96 22.72 0.23 -16.01 16 14 C -0.03 -1.50 10.15 22.40 0.23 -1.28 16 15 C -0.33 -17.18 9.83 22.87 0.22 -16.95 16 16 C 0.24 14.26 6.54 40.19 0.26 14.52 16 17 C -0.46 -27.39 9.13 23.47 0.21 -27.18 16 18 H 0.09 4.87 7.85 -2.91 -0.02 4.85 16 19 C 0.01 0.49 5.49 85.29 0.47 0.96 16 20 N -0.70 -42.00 9.07 21.84 0.20 -41.80 16 21 Si 0.98 42.10 29.56 68.60 2.03 44.13 16 22 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 25 N -0.51 -31.41 5.74 -186.40 -1.07 -32.48 16 26 C -0.21 -7.14 10.73 22.41 0.24 -6.90 16 27 C 0.02 0.52 6.92 41.40 0.29 0.81 16 28 C -0.08 -1.00 9.92 71.24 0.71 -0.29 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.07 0.41 6.56 -2.39 -0.02 0.39 16 32 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.11 0.74 6.56 -2.39 -0.02 0.72 16 35 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.42 16.27 8.43 -92.71 -0.78 15.48 16 38 H 0.13 4.95 8.06 -2.91 -0.02 4.93 16 39 H 0.14 5.14 8.06 -2.91 -0.02 5.11 16 40 H 0.11 5.28 8.06 -2.91 -0.02 5.26 16 41 H 0.27 15.36 8.29 -92.71 -0.77 14.59 16 42 H 0.15 5.17 8.06 -2.91 -0.02 5.15 16 43 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 0.66 7.03 -2.39 -0.02 0.64 16 45 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 Total: -1.00 -82.63 375.23 4.65 -77.98 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.23 Total: 34.03 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: 6.48 Total: -7.24 kcal Atomic # 7 Polarization: -118.75 SS G_CDS: -4.05 Total: -122.80 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.13 kcal Total: -82.63 4.65 -77.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473709.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.208 kcal (2) G-P(sol) polarization free energy of solvation -82.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds